RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 DGKIO75912 1065 aa14.89□□□□□ -0.03
LINC00540-202ENST00000616974 NAMPTP43490 491 aa14.89□□□□□ -0.03
LINC00540-202ENST00000616974 SARSP49591 514 aaKnown RBP14.89□□□□□ -0.03
LINC00540-202ENST00000616974 KCNA1Q09470 495 aa14.89□□□□□ -0.03
LINC00540-202ENST00000616974 ZC2HC1CQ53FD0 456 aaPredicted RBP14.89□□□□□ -0.03
LINC00540-202ENST00000616974 NT5DC1Q5TFE4 455 aa14.89□□□□□ -0.03
LINC00540-202ENST00000616974 ATL3Q6DD88 541 aa14.89□□□□□ -0.03
LINC00540-202ENST00000616974 SLC24A5Q71RS6 500 aa14.89□□□□□ -0.03
LINC00540-202ENST00000616974 ZNF598Q86UK7 904 aaKnown RBP14.89□□□□□ -0.03
LINC00540-202ENST00000616974 ECHDC2Q86YB7 292 aa14.89□□□□□ -0.03
LINC00540-202ENST00000616974 EXOC8Q8IYI6 725 aa14.89□□□□□ -0.03
LINC00540-202ENST00000616974 CEP120Q8N960 986 aa14.89□□□□□ -0.03
LINC00540-202ENST00000616974 SMG8Q8ND04 991 aaKnown RBP14.89□□□□□ -0.03
LINC00540-202ENST00000616974 KIFAP3Q92845 792 aa14.89□□□□□ -0.03
LINC00540-202ENST00000616974 ZNF689Q96CS4 500 aaPredicted RBP14.89□□□□□ -0.03
LINC00540-202ENST00000616974 ZBTB45Q96K62 511 aaPredicted RBP14.89□□□□□ -0.03
LINC00540-202ENST00000616974 FTHL17Q9BXU8 183 aa14.89□□□□□ -0.03
LINC00540-202ENST00000616974 FZD8Q9H461 694 aa14.89□□□□□ -0.03
LINC00540-202ENST00000616974 NXF3Q9H4D5 531 aaKnown RBP14.89□□□□□ -0.03
LINC00540-202ENST00000616974 ZNF576Q9H609 170 aa14.89□□□□□ -0.03
LINC00540-202ENST00000616974 SERTAD1Q9UHV2 236 aa14.89□□□□□ -0.03
LINC00540-202ENST00000616974 CUL9Q8IWT3 2517 aa14.89□□□□□ -0.03
LINC00540-202ENST00000616974 CSPG5O95196 566 aa14.89□□□□□ -0.03
LINC00540-202ENST00000616974 PRKCBP05771 671 aa14.89□□□□□ -0.03
LINC00540-202ENST00000616974 CASP5P51878 434 aa14.89□□□□□ -0.03
LINC00540-202ENST00000616974 PPP2R2DQ66LE6 453 aa14.89□□□□□ -0.03
LINC00540-202ENST00000616974 LRRC55Q6ZSA7 311 aa14.89□□□□□ -0.03
LINC00540-202ENST00000616974 TMEM161BQ8NDZ6 487 aa14.89□□□□□ -0.03
LINC00540-202ENST00000616974 DEPTORQ8TB45 409 aa14.89□□□□□ -0.03
LINC00540-202ENST00000616974 PHOSPHO2Q8TCD6 241 aa14.89□□□□□ -0.03
LINC00540-202ENST00000616974 YME1L1Q96TA2 773 aa14.89□□□□□ -0.03
LINC00540-202ENST00000616974 RAD9AQ99638 391 aa14.89□□□□□ -0.03
LINC00540-202ENST00000616974 SEMA6BQ9H3T3 888 aa14.89□□□□□ -0.03
LINC00540-202ENST00000616974 PRDM12Q9H4Q4 367 aa14.89□□□□□ -0.03
LINC00540-202ENST00000616974 ARHGAP28Q9P2N2 729 aa14.89□□□□□ -0.03
LINC00540-202ENST00000616974 CCDC39Q9UFE4 941 aa14.89□□□□□ -0.03
LINC00540-202ENST00000616974 KCNH3Q9ULD8 1083 aa14.89□□□□□ -0.03
LINC00540-202ENST00000616974 HPSEQ9Y251 543 aa14.89□□□□□ -0.03
LINC00540-202ENST00000616974 PCDHA11Q9Y5I1 949 aa14.89□□□□□ -0.03
LINC00540-202ENST00000616974 NCOR1O75376 2440 aa14.88□□□□□ -0.03
LINC00540-202ENST00000616974 A0A0U1RQF3 1178 aa14.88□□□□□ -0.03
LINC00540-202ENST00000616974 ACTN4O43707 911 aaKnown RBP14.88□□□□□ -0.03
LINC00540-202ENST00000616974 ERLIN2O94905 339 aa14.88□□□□□ -0.03
LINC00540-202ENST00000616974 PLS3P13797 630 aa14.88□□□□□ -0.03
LINC00540-202ENST00000616974 AFMP43652 599 aa14.88□□□□□ -0.03
LINC00540-202ENST00000616974 FAM189BP81408 668 aa14.88□□□□□ -0.03
LINC00540-202ENST00000616974 TFDP1Q14186 410 aa14.88□□□□□ -0.03
LINC00540-202ENST00000616974 ODR4Q5SWX8 454 aa14.88□□□□□ -0.03
LINC00540-202ENST00000616974 ADALQ6DHV7 355 aa14.88□□□□□ -0.03
LINC00540-202ENST00000616974 AGMOQ6ZNB7 445 aa14.88□□□□□ -0.03
LINC00540-202ENST00000616974 SFR1Q86XK3 245 aa14.88□□□□□ -0.03
LINC00540-202ENST00000616974 TMEM192Q8IY95 271 aa14.88□□□□□ -0.03
LINC00540-202ENST00000616974 HELQQ8TDG4 1101 aa14.88□□□□□ -0.03
LINC00540-202ENST00000616974 HAPLN2Q9GZV7 340 aa14.88□□□□□ -0.03
LINC00540-202ENST00000616974 PDZD7Q9H5P4 517 aa14.88□□□□□ -0.03
LINC00540-202ENST00000616974 FAM105AQ9NUU6 356 aa14.88□□□□□ -0.03
LINC00540-202ENST00000616974 ANK1P16157 1881 aa14.88□□□□□ -0.03
LINC00540-202ENST00000616974 RALGAPA2Q2PPJ7 1873 aa14.88□□□□□ -0.03
LINC00540-202ENST00000616974 ZSCAN20P17040 1043 aaPredicted RBP14.87□□□□□ -0.03
LINC00540-202ENST00000616974 AKAP5P24588 427 aa14.87□□□□□ -0.03
LINC00540-202ENST00000616974 TXLNAP40222 546 aa14.87□□□□□ -0.03
LINC00540-202ENST00000616974 ZNF131P52739 623 aa14.87□□□□□ -0.03
LINC00540-202ENST00000616974 ADGRE1Q14246 886 aa14.87□□□□□ -0.03
LINC00540-202ENST00000616974 SEZ6Q53EL9 994 aa14.87□□□□□ -0.03
LINC00540-202ENST00000616974 CCDC73Q6ZRK6 1079 aa14.87□□□□□ -0.03
LINC00540-202ENST00000616974 ARNTL2Q8WYA1 636 aa14.87□□□□□ -0.03
LINC00540-202ENST00000616974 ERCC4Q92889 916 aaPredicted RBP14.87□□□□□ -0.03
LINC00540-202ENST00000616974 TARS2Q9BW92 718 aaKnown RBP14.87□□□□□ -0.03
LINC00540-202ENST00000616974 APOL6Q9BWW8 343 aa14.87□□□□□ -0.03
LINC00540-202ENST00000616974 NFKBIZQ9BYH8 718 aa14.87□□□□□ -0.03
LINC00540-202ENST00000616974 SLC28A3Q9HAS3 691 aa14.87□□□□□ -0.03
LINC00540-202ENST00000616974 KMT5AQ9NQR1 393 aa14.87□□□□□ -0.03
LINC00540-202ENST00000616974 KBTBD4Q9NVX7 518 aa14.87□□□□□ -0.03
LINC00540-202ENST00000616974 CACNG4Q9UBN1 327 aa14.87□□□□□ -0.03
LINC00540-202ENST00000616974 STK17AQ9UEE5 414 aa14.87□□□□□ -0.03
LINC00540-202ENST00000616974 PCDHB2Q9Y5E7 798 aa14.87□□□□□ -0.03
LINC00540-202ENST00000616974 MRPL42Q9Y6G3 142 aaKnown RBP14.87□□□□□ -0.03
LINC00540-202ENST00000616974 EFCAB14O75071 495 aa14.87□□□□□ -0.03
LINC00540-202ENST00000616974 NPTXRO95502 500 aa14.87□□□□□ -0.03
LINC00540-202ENST00000616974 KRT18P05783 430 aaKnown RBP14.87□□□□□ -0.03
LINC00540-202ENST00000616974 PRR29P0C7W0 189 aa14.87□□□□□ -0.03
LINC00540-202ENST00000616974 DMP1Q13316 513 aaPredicted RBP14.87□□□□□ -0.03
LINC00540-202ENST00000616974 CUL4BQ13620 913 aa14.87□□□□□ -0.03
LINC00540-202ENST00000616974 SV2BQ7L1I2 683 aa14.87□□□□□ -0.03
LINC00540-202ENST00000616974 MYCT1Q8N699 235 aa14.87□□□□□ -0.03
LINC00540-202ENST00000616974 FSIP1Q8NA03 581 aa14.87□□□□□ -0.03
LINC00540-202ENST00000616974 SP7Q8TDD2 431 aaPredicted RBP14.87□□□□□ -0.03
LINC00540-202ENST00000616974 IFT74Q96LB3 600 aa14.87□□□□□ -0.03
LINC00540-202ENST00000616974 DRC1Q96MC2 740 aa14.87□□□□□ -0.03
LINC00540-202ENST00000616974 ZFP42Q96MM3 310 aa14.87□□□□□ -0.03
LINC00540-202ENST00000616974 MSRAQ9UJ68 235 aa14.87□□□□□ -0.03
LINC00540-202ENST00000616974 MEFVO15553 781 aaPredicted RBP14.86□□□□□ -0.03
LINC00540-202ENST00000616974 MAPTP10636 758 aaKnown RBP14.86□□□□□ -0.03
LINC00540-202ENST00000616974 IDEP14735 1019 aa14.86□□□□□ -0.03
LINC00540-202ENST00000616974 CMA1P23946 247 aa14.86□□□□□ -0.03
LINC00540-202ENST00000616974 POU5F1BQ06416 359 aa14.86□□□□□ -0.03
LINC00540-202ENST00000616974 NPAS4Q8IUM7 802 aa14.86□□□□□ -0.03
LINC00540-202ENST00000616974 GDPD5Q8WTR4 605 aa14.86□□□□□ -0.03
LINC00540-202ENST00000616974 MYLIPQ8WY64 445 aa14.86□□□□□ -0.03
LINC00540-202ENST00000616974 IPO9Q96P70 1041 aaKnown RBP14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms