RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 PTENP60484 403 aa13.51□□□□□ -0.25
LIG1-221ENST00000613670 EPHA7Q15375 998 aa13.51□□□□□ -0.25
LIG1-221ENST00000613670 MUM1Q2TAK8 710 aa13.51□□□□□ -0.25
LIG1-221ENST00000613670 FYB2Q5VWT5 728 aa13.51□□□□□ -0.25
LIG1-221ENST00000613670 SPATA21Q7Z572 469 aa13.51□□□□□ -0.25
LIG1-221ENST00000613670 RAB3IPQ96QF0 476 aaPredicted RBP13.51□□□□□ -0.25
LIG1-221ENST00000613670 DDX23Q9BUQ8 820 aaKnown RBP13.51□□□□□ -0.25
LIG1-221ENST00000613670 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.51□□□□□ -0.25
LIG1-221ENST00000613670 RBAK-RBAKDNI3L0D1 243 aa13.51□□□□□ -0.25
LIG1-221ENST00000613670 PDHA1P08559 390 aa13.51□□□□□ -0.25
LIG1-221ENST00000613670 NSFP46459 744 aaKnown RBP13.51□□□□□ -0.25
LIG1-221ENST00000613670 VAMP7P51809 220 aa13.51□□□□□ -0.25
LIG1-221ENST00000613670 MTM1Q13496 603 aa13.51□□□□□ -0.25
LIG1-221ENST00000613670 LIN9Q5TKA1 542 aa13.51□□□□□ -0.25
LIG1-221ENST00000613670 RINT1Q6NUQ1 792 aa13.51□□□□□ -0.25
LIG1-221ENST00000613670 DCUN1D2Q6PH85 259 aa13.51□□□□□ -0.25
LIG1-221ENST00000613670 SEPT14Q6ZU15 432 aa13.51□□□□□ -0.25
LIG1-221ENST00000613670 ANKRD35Q8N283 1001 aa13.51□□□□□ -0.25
LIG1-221ENST00000613670 POMGNT1Q8WZA1 660 aa13.51□□□□□ -0.25
LIG1-221ENST00000613670 ARHGEF10LQ9HCE6 1279 aa13.51□□□□□ -0.25
LIG1-221ENST00000613670 ABCF3Q9NUQ8 709 aa13.51□□□□□ -0.25
LIG1-221ENST00000613670 SERPINA10Q9UK55 444 aa13.51□□□□□ -0.25
LIG1-221ENST00000613670 AGTPBP1Q9UPW5 1226 aa13.51□□□□□ -0.25
LIG1-221ENST00000613670 TRPC6Q9Y210 931 aa13.51□□□□□ -0.25
LIG1-221ENST00000613670 ANP32DO95626 131 aa13.5□□□□□ -0.25
LIG1-221ENST00000613670 RPL21P46778 160 aaKnown RBP13.5□□□□□ -0.25
LIG1-221ENST00000613670 MARCKSL1P49006 195 aa13.5□□□□□ -0.25
LIG1-221ENST00000613670 ERFP50548 548 aa13.5□□□□□ -0.25
LIG1-221ENST00000613670 PASD1Q8IV76 773 aa13.5□□□□□ -0.25
LIG1-221ENST00000613670 GRK7Q8WTQ7 553 aa13.5□□□□□ -0.25
LIG1-221ENST00000613670 STMN2Q93045 179 aa13.5□□□□□ -0.25
LIG1-221ENST00000613670 KCTD10Q9H3F6 313 aa13.5□□□□□ -0.25
LIG1-221ENST00000613670 SYNCQ9H7C4 482 aa13.5□□□□□ -0.25
LIG1-221ENST00000613670 ACP6Q9NPH0 428 aa13.5□□□□□ -0.25
LIG1-221ENST00000613670 TCP10L2B9ZVM9 353 aa13.5□□□□□ -0.25
LIG1-221ENST00000613670 UBAP1LF5GYI3 381 aa13.5□□□□□ -0.25
LIG1-221ENST00000613670 ATP6V1G2O95670 118 aa13.5□□□□□ -0.25
LIG1-221ENST00000613670 NFIAQ12857 509 aa13.5□□□□□ -0.25
LIG1-221ENST00000613670 STRN3Q13033 797 aa13.5□□□□□ -0.25
LIG1-221ENST00000613670 COL1A1P02452 1464 aaPredicted RBP13.5□□□□□ -0.25
LIG1-221ENST00000613670 SLC16A4O15374 487 aa13.5□□□□□ -0.25
LIG1-221ENST00000613670 MSH4O15457 936 aa13.5□□□□□ -0.25
LIG1-221ENST00000613670 DRD4P21917 467 aa13.5□□□□□ -0.25
LIG1-221ENST00000613670 SARNPP82979 210 aaKnown RBP13.5□□□□□ -0.25
LIG1-221ENST00000613670 TSNAXIP1Q2TAA8 658 aa13.5□□□□□ -0.25
LIG1-221ENST00000613670 SLC10A5Q5PT55 438 aa13.5□□□□□ -0.25
LIG1-221ENST00000613670 PADI6Q6TGC4 694 aa13.5□□□□□ -0.25
LIG1-221ENST00000613670 ZNF572Q7Z3I7 529 aaPredicted RBP13.5□□□□□ -0.25
LIG1-221ENST00000613670 RNF25Q96BH1 459 aaPredicted RBP13.5□□□□□ -0.25
LIG1-221ENST00000613670 SAYSD1Q9NPB0 183 aa13.5□□□□□ -0.25
LIG1-221ENST00000613670 MYH15Q9Y2K3 1946 aa13.49□□□□□ -0.25
LIG1-221ENST00000613670 CFAP73A6NFT4 308 aa13.49□□□□□ -0.25
LIG1-221ENST00000613670 SLC16A3O15427 465 aaKnown RBP13.49□□□□□ -0.25
LIG1-221ENST00000613670 BFSP1Q12934 665 aa13.49□□□□□ -0.25
LIG1-221ENST00000613670 ZCWPW2Q504Y3 356 aa13.49□□□□□ -0.25
LIG1-221ENST00000613670 EPM2AIP1Q7L775 607 aaPredicted RBP13.49□□□□□ -0.25
LIG1-221ENST00000613670 LNX1Q8TBB1 728 aaPredicted RBP13.49□□□□□ -0.25
LIG1-221ENST00000613670 ACCSQ96QU6 501 aa13.49□□□□□ -0.25
LIG1-221ENST00000613670 SMC6Q96SB8 1091 aa13.49□□□□□ -0.25
LIG1-221ENST00000613670 ERVK-5Q9HDB9 667 aa13.49□□□□□ -0.25
LIG1-221ENST00000613670 GOLGA8SH3BPF8 625 aa13.49□□□□□ -0.25
LIG1-221ENST00000613670 GOLGA8MH3BSY2 632 aa13.49□□□□□ -0.25
LIG1-221ENST00000613670 BBOX1O75936 387 aa13.49□□□□□ -0.25
LIG1-221ENST00000613670 ARSHQ5FYA8 562 aa13.49□□□□□ -0.25
LIG1-221ENST00000613670 EP400NLQ6ZTU2 488 aa13.49□□□□□ -0.25
LIG1-221ENST00000613670 GBP7Q8N8V2 638 aaPredicted RBP13.49□□□□□ -0.25
LIG1-221ENST00000613670 XXYLT1Q8NBI6 393 aa13.49□□□□□ -0.25
LIG1-221ENST00000613670 PPP1R14CQ8TAE6 165 aa13.49□□□□□ -0.25
LIG1-221ENST00000613670 TBC1D16Q8TBP0 767 aa13.49□□□□□ -0.25
LIG1-221ENST00000613670 MAIP1Q8WWC4 291 aa13.49□□□□□ -0.25
LIG1-221ENST00000613670 PRCCQ92733 491 aaPredicted RBP13.49□□□□□ -0.25
LIG1-221ENST00000613670 POP1Q99575 1024 aaKnown RBP13.49□□□□□ -0.25
LIG1-221ENST00000613670 C1orf112Q9NSG2 853 aa13.49□□□□□ -0.25
LIG1-221ENST00000613670 PI4KBQ9UBF8 816 aa13.49□□□□□ -0.25
LIG1-221ENST00000613670 DCTN4Q9UJW0 460 aa13.49□□□□□ -0.25
LIG1-221ENST00000613670 INTUQ9ULD6 942 aa13.49□□□□□ -0.25
LIG1-221ENST00000613670 PAX7P23759 505 aa13.49□□□□□ -0.25
LIG1-221ENST00000613670 CBWD6Q4V339 395 aa13.49□□□□□ -0.25
LIG1-221ENST00000613670 CBWD3Q5JTY5 395 aa13.49□□□□□ -0.25
LIG1-221ENST00000613670 CBWD5Q5RIA9 395 aa13.49□□□□□ -0.25
LIG1-221ENST00000613670 ANKRD20A3Q5VUR7 823 aa13.49□□□□□ -0.25
LIG1-221ENST00000613670 ALG3Q92685 438 aa13.49□□□□□ -0.25
LIG1-221ENST00000613670 CSRNP1Q96S65 589 aa13.49□□□□□ -0.25
LIG1-221ENST00000613670 LXNQ9BS40 222 aa13.49□□□□□ -0.25
LIG1-221ENST00000613670 AGPAT3Q9NRZ7 376 aa13.49□□□□□ -0.25
LIG1-221ENST00000613670 KLHL11Q9NVR0 708 aa13.49□□□□□ -0.25
LIG1-221ENST00000613670 TRAF3IP3Q9Y228 551 aa13.49□□□□□ -0.25
LIG1-221ENST00000613670 CLRN2A0PK11 232 aa13.48□□□□□ -0.25
LIG1-221ENST00000613670 TESPA1A2RU30 521 aaPredicted RBP13.48□□□□□ -0.25
LIG1-221ENST00000613670 ENO4A6NNW6 628 aa13.48□□□□□ -0.25
LIG1-221ENST00000613670 ALAS1P13196 640 aa13.48□□□□□ -0.25
LIG1-221ENST00000613670 COILP38432 576 aaPredicted RBP13.48□□□□□ -0.25
LIG1-221ENST00000613670 DYNLT1P63172 113 aa13.48□□□□□ -0.25
LIG1-221ENST00000613670 ELF3P78545 371 aaPredicted RBP13.48□□□□□ -0.25
LIG1-221ENST00000613670 PREPLQ4J6C6 727 aaPredicted RBP13.48□□□□□ -0.25
LIG1-221ENST00000613670 COBLL1Q53SF7 1204 aa13.48□□□□□ -0.25
LIG1-221ENST00000613670 ERMARDQ5T6L9 678 aa13.48□□□□□ -0.25
LIG1-221ENST00000613670 SCYL3Q8IZE3 742 aa13.48□□□□□ -0.25
LIG1-221ENST00000613670 KDM4CQ9H3R0 1056 aa13.48□□□□□ -0.25
LIG1-221ENST00000613670 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms