RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 SLC26A4O43511 780 aa9.74□□□□□ -0.85
TRIM28-214ENST00000600840 NCK2O43639 380 aa9.74□□□□□ -0.85
TRIM28-214ENST00000600840 MARCH6O60337 910 aa9.74□□□□□ -0.85
TRIM28-214ENST00000600840 CSDE1O75534 798 aaKnown RBP9.74□□□□□ -0.85
TRIM28-214ENST00000600840 RPLP2P05387 115 aaKnown RBP9.74□□□□□ -0.85
TRIM28-214ENST00000600840 FGFR1P11362 822 aa9.74□□□□□ -0.85
TRIM28-214ENST00000600840 XRCC6P12956 609 aaKnown RBP eCLIP9.74□□□□□ -0.85
TRIM28-214ENST00000600840 QARSP47897 775 aaKnown RBP9.74□□□□□ -0.85
TRIM28-214ENST00000600840 SARSP49591 514 aaKnown RBP9.74□□□□□ -0.85
TRIM28-214ENST00000600840 CRYBB1P53674 252 aaPredicted RBP9.74□□□□□ -0.85
TRIM28-214ENST00000600840 NLRP11P59045 1033 aaKnown RBP9.74□□□□□ -0.85
TRIM28-214ENST00000600840 PSMC5P62195 406 aa9.74□□□□□ -0.85
TRIM28-214ENST00000600840 FAM189BP81408 668 aa9.74□□□□□ -0.85
TRIM28-214ENST00000600840 RBM10P98175 930 aaKnown RBP9.74□□□□□ -0.85
TRIM28-214ENST00000600840 PRKCEQ02156 737 aa9.74□□□□□ -0.85
TRIM28-214ENST00000600840 ADAM15Q13444 863 aa9.74□□□□□ -0.85
TRIM28-214ENST00000600840 CTTNQ14247 550 aaKnown RBP9.74□□□□□ -0.85
TRIM28-214ENST00000600840 ANO5Q75V66 913 aa9.74□□□□□ -0.85
TRIM28-214ENST00000600840 RPGRIP1Q96KN7 1286 aa9.74□□□□□ -0.85
TRIM28-214ENST00000600840 NIFKQ9BYG3 293 aaKnown RBP9.74□□□□□ -0.85
TRIM28-214ENST00000600840 LMAN2LQ9H0V9 348 aa9.74□□□□□ -0.85
TRIM28-214ENST00000600840 GOLPH3LQ9H4A5 285 aa9.74□□□□□ -0.85
TRIM28-214ENST00000600840 CWH43Q9H720 699 aa9.74□□□□□ -0.85
TRIM28-214ENST00000600840 RGS18Q9NS28 235 aa9.74□□□□□ -0.85
TRIM28-214ENST00000600840 BLOC1S4Q9NUP1 217 aa9.74□□□□□ -0.85
TRIM28-214ENST00000600840 BARX2Q9UMQ3 279 aaPredicted RBP9.74□□□□□ -0.85
TRIM28-214ENST00000600840 USP15Q9Y4E8 981 aaPredicted RBP9.74□□□□□ -0.85
TRIM28-214ENST00000600840 A0A087WWV3 80 aa9.73□□□□□ -0.85
TRIM28-214ENST00000600840 TBKBP1A7MCY6 615 aa9.73□□□□□ -0.85
TRIM28-214ENST00000600840 EYA4O95677 639 aa9.73□□□□□ -0.85
TRIM28-214ENST00000600840 OATP04181 439 aa9.73□□□□□ -0.85
TRIM28-214ENST00000600840 STAG3L1P0CL83 205 aa9.73□□□□□ -0.85
TRIM28-214ENST00000600840 NCLP19338 710 aaKnown RBP9.73□□□□□ -0.85
TRIM28-214ENST00000600840 ME1P48163 572 aa9.73□□□□□ -0.85
TRIM28-214ENST00000600840 CYP4A11Q02928 519 aa9.73□□□□□ -0.85
TRIM28-214ENST00000600840 SNW1Q13573 536 aaKnown RBP9.73□□□□□ -0.85
TRIM28-214ENST00000600840 CBX2Q14781 532 aaPredicted RBP9.73□□□□□ -0.85
TRIM28-214ENST00000600840 LRRC55Q6ZSA7 311 aa9.73□□□□□ -0.85
TRIM28-214ENST00000600840 CABP7Q86V35 215 aa9.73□□□□□ -0.85
TRIM28-214ENST00000600840 KCTD17Q8N5Z5 321 aa9.73□□□□□ -0.85
TRIM28-214ENST00000600840 SMRP1Q8NCR6 262 aa9.73□□□□□ -0.85
TRIM28-214ENST00000600840 POF1BQ8WVV4 589 aa9.73□□□□□ -0.85
TRIM28-214ENST00000600840 P2RX5Q93086 422 aa9.73□□□□□ -0.85
TRIM28-214ENST00000600840 MTRQ99707 1265 aa9.73□□□□□ -0.85
TRIM28-214ENST00000600840 LXNQ9BS40 222 aa9.73□□□□□ -0.85
TRIM28-214ENST00000600840 PLVAPQ9BX97 442 aa9.73□□□□□ -0.85
TRIM28-214ENST00000600840 ZSWIM4Q9H7M6 989 aa9.73□□□□□ -0.85
TRIM28-214ENST00000600840 TYW1Q9NV66 732 aaKnown RBP9.73□□□□□ -0.85
TRIM28-214ENST00000600840 LRFN2Q9ULH4 789 aa9.73□□□□□ -0.85
TRIM28-214ENST00000600840 AKT3Q9Y243 479 aa9.73□□□□□ -0.85
TRIM28-214ENST00000600840 PCDHB7Q9Y5E2 793 aa9.73□□□□□ -0.85
TRIM28-214ENST00000600840 STK24Q9Y6E0 443 aa9.73□□□□□ -0.85
TRIM28-214ENST00000600840 IGKV6-21A0A0C4DH24 114 aa9.72□□□□□ -0.85
TRIM28-214ENST00000600840 DENND3A2RUS2 1198 aa9.72□□□□□ -0.85
TRIM28-214ENST00000600840 E9PMD0 336 aa9.72□□□□□ -0.85
TRIM28-214ENST00000600840 GPR182O15218 404 aa9.72□□□□□ -0.85
TRIM28-214ENST00000600840 GALR2O43603 387 aaPredicted RBP9.72□□□□□ -0.85
TRIM28-214ENST00000600840 PRPF40AO75400 957 aaKnown RBP9.72□□□□□ -0.85
TRIM28-214ENST00000600840 GLP2RO95838 553 aa9.72□□□□□ -0.85
TRIM28-214ENST00000600840 PTMSP20962 102 aa9.72□□□□□ -0.85
TRIM28-214ENST00000600840 CCT6AP40227 531 aaKnown RBP9.72□□□□□ -0.85
TRIM28-214ENST00000600840 PBX3P40426 434 aa9.72□□□□□ -0.85
TRIM28-214ENST00000600840 GPC3P51654 580 aa9.72□□□□□ -0.85
TRIM28-214ENST00000600840 ERVFC1P60507 584 aa9.72□□□□□ -0.85
TRIM28-214ENST00000600840 KARSQ15046 597 aaKnown RBP9.72□□□□□ -0.85
TRIM28-214ENST00000600840 MTERF2Q49AM1 385 aa9.72□□□□□ -0.85
TRIM28-214ENST00000600840 XKR3Q5GH77 459 aa9.72□□□□□ -0.85
TRIM28-214ENST00000600840 KRT79Q5XKE5 535 aa9.72□□□□□ -0.85
TRIM28-214ENST00000600840 POTEGQ6S5H5 508 aa9.72□□□□□ -0.85
TRIM28-214ENST00000600840 SLC24A5Q71RS6 500 aa9.72□□□□□ -0.85
TRIM28-214ENST00000600840 FRMD5Q7Z6J6 570 aa9.72□□□□□ -0.85
TRIM28-214ENST00000600840 RBM23Q86U06 439 aaKnown RBP9.72□□□□□ -0.85
TRIM28-214ENST00000600840 TPH2Q8IWU9 490 aa9.72□□□□□ -0.85
TRIM28-214ENST00000600840 FMR1NBQ8N0W7 255 aaPredicted RBP9.72□□□□□ -0.85
TRIM28-214ENST00000600840 SNX29Q8TEQ0 813 aa9.72□□□□□ -0.85
TRIM28-214ENST00000600840 CASD1Q96PB1 797 aa9.72□□□□□ -0.85
TRIM28-214ENST00000600840 RAB34Q9BZG1 259 aa9.72□□□□□ -0.85
TRIM28-214ENST00000600840 IRF2BPLQ9H1B7 796 aa9.72□□□□□ -0.85
TRIM28-214ENST00000600840 ANKEF1Q9NU02 776 aa9.72□□□□□ -0.85
TRIM28-214ENST00000600840 DBR1Q9UK59 544 aaKnown RBP9.72□□□□□ -0.85
TRIM28-214ENST00000600840 KIAA1024Q9UPX6 916 aa9.72□□□□□ -0.85
TRIM28-214ENST00000600840 RWDD3Q9Y3V2 267 aa9.72□□□□□ -0.85
TRIM28-214ENST00000600840 PTPRZ1P23471 2315 aaPredicted RBP9.71□□□□□ -0.85
TRIM28-214ENST00000600840 A0A1B0GVL5 298 aa9.71□□□□□ -0.86
TRIM28-214ENST00000600840 PER2O15055 1255 aa9.71□□□□□ -0.86
TRIM28-214ENST00000600840 MAGEB2O15479 319 aa9.71□□□□□ -0.86
TRIM28-214ENST00000600840 PFKFB1P16118 471 aa9.71□□□□□ -0.86
TRIM28-214ENST00000600840 ATF7P17544 494 aaPredicted RBP9.71□□□□□ -0.86
TRIM28-214ENST00000600840 PLCG1P19174 1290 aa9.71□□□□□ -0.86
TRIM28-214ENST00000600840 SP100P23497 879 aaPredicted RBP9.71□□□□□ -0.86
TRIM28-214ENST00000600840 EIF4BP23588 611 aaKnown RBP9.71□□□□□ -0.86
TRIM28-214ENST00000600840 MCM4P33991 863 aa9.71□□□□□ -0.86
TRIM28-214ENST00000600840 UBA7P41226 1012 aa9.71□□□□□ -0.86
TRIM28-214ENST00000600840 NBL1P41271 181 aa9.71□□□□□ -0.86
TRIM28-214ENST00000600840 NRIP1P48552 1158 aa9.71□□□□□ -0.86
TRIM28-214ENST00000600840 RARRES1P49788 294 aa9.71□□□□□ -0.86
TRIM28-214ENST00000600840 NDUFA8P51970 172 aa9.71□□□□□ -0.86
TRIM28-214ENST00000600840 NPEPPSP55786 919 aa9.71□□□□□ -0.86
TRIM28-214ENST00000600840 PTPN21Q16825 1174 aa9.71□□□□□ -0.86
TRIM28-214ENST00000600840 ARSHQ5FYA8 562 aa9.71□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms