RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 SUSD6Q92537 303 aa10.91□□□□□ -0.66
VRK3-216ENST00000599342 IGSF21Q96ID5 467 aa10.91□□□□□ -0.66
VRK3-216ENST00000599342 APOL5Q9BWW9 433 aa10.91□□□□□ -0.66
VRK3-216ENST00000599342 ZBP1Q9H171 429 aa10.91□□□□□ -0.66
VRK3-216ENST00000599342 MINDY3Q9H8M7 445 aa10.91□□□□□ -0.66
VRK3-216ENST00000599342 ANKEF1Q9NU02 776 aa10.91□□□□□ -0.66
VRK3-216ENST00000599342 KANSL3Q9P2N6 904 aa10.91□□□□□ -0.66
VRK3-216ENST00000599342 STK39Q9UEW8 545 aa10.91□□□□□ -0.66
VRK3-216ENST00000599342 POTEMA6NI47 508 aa10.9□□□□□ -0.66
VRK3-216ENST00000599342 SPDYE4A6NLX3 237 aa10.9□□□□□ -0.66
VRK3-216ENST00000599342 INO80B-WBP1J3KQ70 363 aa10.9□□□□□ -0.66
VRK3-216ENST00000599342 CLASP2O75122 1294 aaKnown RBP10.9□□□□□ -0.66
VRK3-216ENST00000599342 LYPLA2O95372 231 aa10.9□□□□□ -0.66
VRK3-216ENST00000599342 CTSAP10619 480 aa10.9□□□□□ -0.66
VRK3-216ENST00000599342 NCLP19338 710 aaKnown RBP10.9□□□□□ -0.66
VRK3-216ENST00000599342 ATP2B1P20020 1258 aa10.9□□□□□ -0.66
VRK3-216ENST00000599342 HOXA11P31270 313 aaPredicted RBP10.9□□□□□ -0.66
VRK3-216ENST00000599342 MCM7P33993 719 aa10.9□□□□□ -0.66
VRK3-216ENST00000599342 RARRES1P49788 294 aa10.9□□□□□ -0.66
VRK3-216ENST00000599342 PTENP60484 403 aa10.9□□□□□ -0.66
VRK3-216ENST00000599342 GUCY1B3Q02153 619 aa10.9□□□□□ -0.66
VRK3-216ENST00000599342 ITIH3Q06033 890 aa10.9□□□□□ -0.66
VRK3-216ENST00000599342 GNL2Q13823 731 aaKnown RBP10.9□□□□□ -0.66
VRK3-216ENST00000599342 SYCE2Q6PIF2 218 aa10.9□□□□□ -0.66
VRK3-216ENST00000599342 AGMOQ6ZNB7 445 aa10.9□□□□□ -0.66
VRK3-216ENST00000599342 MRPL10Q7Z7H8 261 aaKnown RBP10.9□□□□□ -0.66
VRK3-216ENST00000599342 TMEM173Q86WV6 379 aaPredicted RBP10.9□□□□□ -0.66
VRK3-216ENST00000599342 CCDC83Q8IWF9 413 aa10.9□□□□□ -0.66
VRK3-216ENST00000599342 HACE1Q8IYU2 909 aa10.9□□□□□ -0.66
VRK3-216ENST00000599342 EDAQ92838 391 aa10.9□□□□□ -0.66
VRK3-216ENST00000599342 CCDC51Q96ER9 411 aa10.9□□□□□ -0.66
VRK3-216ENST00000599342 C8orf76Q96K31 380 aa10.9□□□□□ -0.66
VRK3-216ENST00000599342 HSD17B14Q9BPX1 270 aa10.9□□□□□ -0.66
VRK3-216ENST00000599342 TRIM6Q9C030 488 aaPredicted RBP10.9□□□□□ -0.66
VRK3-216ENST00000599342 S1PR5Q9H228 398 aa10.9□□□□□ -0.66
VRK3-216ENST00000599342 UBN1Q9NPG3 1134 aa10.9□□□□□ -0.66
VRK3-216ENST00000599342 XPNPEP1Q9NQW7 623 aa10.9□□□□□ -0.66
VRK3-216ENST00000599342 DNAJB4Q9UDY4 337 aa10.9□□□□□ -0.66
VRK3-216ENST00000599342 LIMCH1Q9UPQ0 1083 aa10.9□□□□□ -0.66
VRK3-216ENST00000599342 NR2E1Q9Y466 385 aa10.9□□□□□ -0.66
VRK3-216ENST00000599342 ARID2Q68CP9 1835 aa10.89□□□□□ -0.67
VRK3-216ENST00000599342 WNT7AO00755 349 aa10.89□□□□□ -0.67
VRK3-216ENST00000599342 TSPAN1O60635 241 aa10.89□□□□□ -0.67
VRK3-216ENST00000599342 USO1O60763 962 aaKnown RBP10.89□□□□□ -0.67
VRK3-216ENST00000599342 POMCP01189 267 aa10.89□□□□□ -0.67
VRK3-216ENST00000599342 ALDH2P05091 517 aa10.89□□□□□ -0.67
VRK3-216ENST00000599342 ITGA4P13612 1032 aa10.89□□□□□ -0.67
VRK3-216ENST00000599342 SP100P23497 879 aaPredicted RBP10.89□□□□□ -0.67
VRK3-216ENST00000599342 SLC11A1P49279 550 aa10.89□□□□□ -0.67
VRK3-216ENST00000599342 POU5F1BQ06416 359 aa10.89□□□□□ -0.67
VRK3-216ENST00000599342 CAPSQ13938 189 aa10.89□□□□□ -0.67
VRK3-216ENST00000599342 UBXN11Q5T124 520 aa10.89□□□□□ -0.67
VRK3-216ENST00000599342 HFE2Q6ZVN8 426 aa10.89□□□□□ -0.67
VRK3-216ENST00000599342 ZBTB33Q86T24 672 aa10.89□□□□□ -0.67
VRK3-216ENST00000599342 PPFIBP1Q86W92 1011 aa10.89□□□□□ -0.67
VRK3-216ENST00000599342 ZNF280BQ86YH2 543 aa10.89□□□□□ -0.67
VRK3-216ENST00000599342 FAM184AQ8NB25 1140 aa10.89□□□□□ -0.67
VRK3-216ENST00000599342 ERMNQ8TAM6 284 aa10.89□□□□□ -0.67
VRK3-216ENST00000599342 PIGOQ8TEQ8 1089 aa10.89□□□□□ -0.67
VRK3-216ENST00000599342 AUTS2Q8WXX7 1259 aa10.89□□□□□ -0.67
VRK3-216ENST00000599342 CPB2Q96IY4 423 aa10.89□□□□□ -0.67
VRK3-216ENST00000599342 MFSD14AQ96MC6 490 aa10.89□□□□□ -0.67
VRK3-216ENST00000599342 NECTIN4Q96NY8 510 aa10.89□□□□□ -0.67
VRK3-216ENST00000599342 MTMR9Q96QG7 549 aa10.89□□□□□ -0.67
VRK3-216ENST00000599342 LLPHQ9BRT6 129 aaKnown RBP10.89□□□□□ -0.67
VRK3-216ENST00000599342 TMEM175Q9BSA9 504 aa10.89□□□□□ -0.67
VRK3-216ENST00000599342 TSHZ2Q9NRE2 1034 aa10.89□□□□□ -0.67
VRK3-216ENST00000599342 DZANK1Q9NVP4 752 aa10.89□□□□□ -0.67
VRK3-216ENST00000599342 FAN1Q9Y2M0 1017 aa10.89□□□□□ -0.67
VRK3-216ENST00000599342 IPPQ9Y573 584 aa10.89□□□□□ -0.67
VRK3-216ENST00000599342 IRAK3Q9Y616 596 aa10.89□□□□□ -0.67
VRK3-216ENST00000599342 BDP1A6H8Y1 2624 aa10.88□□□□□ -0.67
VRK3-216ENST00000599342 LRRIQ4A6NIV6 560 aa10.88□□□□□ -0.67
VRK3-216ENST00000599342 NR1I2O75469 434 aa10.88□□□□□ -0.67
VRK3-216ENST00000599342 DDHD2O94830 711 aa10.88□□□□□ -0.67
VRK3-216ENST00000599342 SEC24BO95487 1268 aa10.88□□□□□ -0.67
VRK3-216ENST00000599342 XRCC6P12956 609 aaKnown RBP eCLIP10.88□□□□□ -0.67
VRK3-216ENST00000599342 ARL2P36404 184 aa10.88□□□□□ -0.67
VRK3-216ENST00000599342 MLH1P40692 756 aa10.88□□□□□ -0.67
VRK3-216ENST00000599342 MTHFRP42898 656 aa10.88□□□□□ -0.67
VRK3-216ENST00000599342 HMGN5P82970 282 aaKnown RBP10.88□□□□□ -0.67
VRK3-216ENST00000599342 ZXDAP98168 799 aa10.88□□□□□ -0.67
VRK3-216ENST00000599342 MBTD1Q05BQ5 628 aa10.88□□□□□ -0.67
VRK3-216ENST00000599342 ST3GAL1Q11201 340 aa10.88□□□□□ -0.67
VRK3-216ENST00000599342 ORC2Q13416 577 aaPredicted RBP10.88□□□□□ -0.67
VRK3-216ENST00000599342 RARS2Q5T160 578 aaKnown RBP10.88□□□□□ -0.67
VRK3-216ENST00000599342 CABP7Q86V35 215 aa10.88□□□□□ -0.67
VRK3-216ENST00000599342 IFNLR1Q8IU57 520 aaPredicted RBP10.88□□□□□ -0.67
VRK3-216ENST00000599342 SMG8Q8ND04 991 aaKnown RBP10.88□□□□□ -0.67
VRK3-216ENST00000599342 MCPH1Q8NEM0 835 aa10.88□□□□□ -0.67
VRK3-216ENST00000599342 ASAP3Q8TDY4 903 aa10.88□□□□□ -0.67
VRK3-216ENST00000599342 BCL7CQ8WUZ0 217 aaPredicted RBP10.88□□□□□ -0.67
VRK3-216ENST00000599342 RIPOR3Q96MK2 946 aa10.88□□□□□ -0.67
VRK3-216ENST00000599342 APOL6Q9BWW8 343 aa10.88□□□□□ -0.67
VRK3-216ENST00000599342 EMILIN2Q9BXX0 1053 aa10.88□□□□□ -0.67
VRK3-216ENST00000599342 EIF2AQ9BY44 585 aaKnown RBP10.88□□□□□ -0.67
VRK3-216ENST00000599342 NFKBIZQ9BYH8 718 aa10.88□□□□□ -0.67
VRK3-216ENST00000599342 CSRNP2Q9H175 543 aa10.88□□□□□ -0.67
VRK3-216ENST00000599342 POLR3FQ9H1D9 316 aaPredicted RBP10.88□□□□□ -0.67
VRK3-216ENST00000599342 KCNH6Q9H252 994 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms