RNA–Protein interactions for RNA: ENST00000594828.7

LSM4-204, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 807 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-204ENST00000594828 CAPSQ13938 189 aa26.09■■□□□ 1.77
LSM4-204ENST00000594828 AGMOQ6ZNB7 445 aa26.09■■□□□ 1.77
LSM4-204ENST00000594828 IFNLR1Q8IU57 520 aaPredicted RBP26.09■■□□□ 1.77
LSM4-204ENST00000594828 TMEM169Q96HH4 297 aa26.09■■□□□ 1.77
LSM4-204ENST00000594828 NRDE2Q9H7Z3 1164 aa26.09■■□□□ 1.77
LSM4-204ENST00000594828 DBR1Q9UK59 544 aaKnown RBP26.09■■□□□ 1.77
LSM4-204ENST00000594828 C19orf67A6NJJ6 358 aa26.08■■□□□ 1.77
LSM4-204ENST00000594828 HIDE1A8MVS5 230 aa26.08■■□□□ 1.77
LSM4-204ENST00000594828 TSPAN1O60635 241 aa26.08■■□□□ 1.77
LSM4-204ENST00000594828 USO1O60763 962 aaKnown RBP26.08■■□□□ 1.77
LSM4-204ENST00000594828 COL9A1P20849 921 aa26.08■■□□□ 1.77
LSM4-204ENST00000594828 GLRA2P23416 452 aa26.08■■□□□ 1.77
LSM4-204ENST00000594828 U2AF2P26368 475 aaKnown RBP eCLIP26.08■■□□□ 1.77
LSM4-204ENST00000594828 RBM10P98175 930 aaKnown RBP26.08■■□□□ 1.77
LSM4-204ENST00000594828 SMRP1Q8NCR6 262 aa26.08■■□□□ 1.77
LSM4-204ENST00000594828 CNNM3Q8NE01 707 aa26.08■■□□□ 1.77
LSM4-204ENST00000594828 URGCPQ8TCY9 931 aa26.08■■□□□ 1.77
LSM4-204ENST00000594828 POLR3FQ9H1D9 316 aaPredicted RBP26.08■■□□□ 1.77
LSM4-204ENST00000594828 RSAD1Q9HA92 442 aa26.08■■□□□ 1.77
LSM4-204ENST00000594828 UPF2Q9HAU5 1272 aaKnown RBP26.08■■□□□ 1.77
LSM4-204ENST00000594828 CNTNAP2Q9UHC6 1331 aa26.08■■□□□ 1.77
LSM4-204ENST00000594828 NCLP19338 710 aaKnown RBP26.07■■□□□ 1.76
LSM4-204ENST00000594828 RPA1P27694 616 aa26.07■■□□□ 1.76
LSM4-204ENST00000594828 MBTD1Q05BQ5 628 aa26.07■■□□□ 1.76
LSM4-204ENST00000594828 SMC1AQ14683 1233 aaKnown RBP26.07■■□□□ 1.76
LSM4-204ENST00000594828 BMS1Q14692 1282 aaKnown RBP26.07■■□□□ 1.76
LSM4-204ENST00000594828 NOTUMQ6P988 496 aa26.07■■□□□ 1.76
LSM4-204ENST00000594828 MAEAQ7L5Y9 396 aa26.07■■□□□ 1.76
LSM4-204ENST00000594828 MRPL43Q8N983 215 aaKnown RBP26.07■■□□□ 1.76
LSM4-204ENST00000594828 VN1R2Q8NFZ6 395 aa26.07■■□□□ 1.76
LSM4-204ENST00000594828 POP1Q99575 1024 aaKnown RBP26.07■■□□□ 1.76
LSM4-204ENST00000594828 NFKBIZQ9BYH8 718 aa26.07■■□□□ 1.76
LSM4-204ENST00000594828 GBP3Q9H0R5 595 aa26.07■■□□□ 1.76
LSM4-204ENST00000594828 KANSL3Q9P2N6 904 aa26.07■■□□□ 1.76
LSM4-204ENST00000594828 GALTP07902 379 aa26.06■■□□□ 1.76
LSM4-204ENST00000594828 SRGAP2BP0DMP2 458 aa26.06■■□□□ 1.76
LSM4-204ENST00000594828 NBR1Q14596 966 aa26.06■■□□□ 1.76
LSM4-204ENST00000594828 TMEM184AQ6ZMB5 413 aa26.06■■□□□ 1.76
LSM4-204ENST00000594828 C4orf32Q8N8J7 132 aa26.06■■□□□ 1.76
LSM4-204ENST00000594828 SMG8Q8ND04 991 aaKnown RBP26.06■■□□□ 1.76
LSM4-204ENST00000594828 MCPH1Q8NEM0 835 aa26.06■■□□□ 1.76
LSM4-204ENST00000594828 CCDC51Q96ER9 411 aa26.06■■□□□ 1.76
LSM4-204ENST00000594828 IGSF21Q96ID5 467 aa26.06■■□□□ 1.76
LSM4-204ENST00000594828 CPB2Q96IY4 423 aa26.06■■□□□ 1.76
LSM4-204ENST00000594828 UBN1Q9NPG3 1134 aa26.06■■□□□ 1.76
LSM4-204ENST00000594828 KIF3AQ9Y496 699 aa26.06■■□□□ 1.76
LSM4-204ENST00000594828 ITGA4P13612 1032 aa26.05■■□□□ 1.76
LSM4-204ENST00000594828 ALADP13716 330 aa26.05■■□□□ 1.76
LSM4-204ENST00000594828 KCNC3Q14003 757 aa26.05■■□□□ 1.76
LSM4-204ENST00000594828 TMEM31Q5JXX7 168 aa26.05■■□□□ 1.76
LSM4-204ENST00000594828 POTEGQ6S5H5 508 aa26.05■■□□□ 1.76
LSM4-204ENST00000594828 TMEM173Q86WV6 379 aaPredicted RBP26.05■■□□□ 1.76
LSM4-204ENST00000594828 ZNF280BQ86YH2 543 aa26.05■■□□□ 1.76
LSM4-204ENST00000594828 EIF2AQ9BY44 585 aaKnown RBP26.05■■□□□ 1.76
LSM4-204ENST00000594828 CSRNP2Q9H175 543 aa26.05■■□□□ 1.76
LSM4-204ENST00000594828 GPRC5CQ9NQ84 441 aa26.05■■□□□ 1.76
LSM4-204ENST00000594828 DNAJB4Q9UDY4 337 aa26.05■■□□□ 1.76
LSM4-204ENST00000594828 IPPQ9Y573 584 aa26.05■■□□□ 1.76
LSM4-204ENST00000594828 C2orf71A6NGG8 1288 aa26.04■■□□□ 1.76
LSM4-204ENST00000594828 CXCL14O95715 111 aa26.04■■□□□ 1.76
LSM4-204ENST00000594828 CA8P35219 290 aa26.04■■□□□ 1.76
LSM4-204ENST00000594828 TOB1P50616 345 aaPredicted RBP26.04■■□□□ 1.76
LSM4-204ENST00000594828 FXR2P51116 673 aaKnown RBP eCLIP26.04■■□□□ 1.76
LSM4-204ENST00000594828 AFF1P51825 1210 aaKnown RBP26.04■■□□□ 1.76
LSM4-204ENST00000594828 AMHR2Q16671 573 aa26.04■■□□□ 1.76
LSM4-204ENST00000594828 HAUS3Q68CZ6 603 aa26.04■■□□□ 1.76
LSM4-204ENST00000594828 DDX53Q86TM3 631 aaKnown RBP26.04■■□□□ 1.76
LSM4-204ENST00000594828 VPS52Q8N1B4 723 aa26.04■■□□□ 1.76
LSM4-204ENST00000594828 FAM193BQ96PV7 902 aaPredicted RBP26.04■■□□□ 1.76
LSM4-204ENST00000594828 LRFN3Q9BTN0 628 aa26.04■■□□□ 1.76
LSM4-204ENST00000594828 USP15Q9Y4E8 981 aaPredicted RBP26.04■■□□□ 1.76
LSM4-204ENST00000594828 LRRIQ4A6NIV6 560 aa26.03■■□□□ 1.76
LSM4-204ENST00000594828 GPR37L1O60883 481 aa26.03■■□□□ 1.76
LSM4-204ENST00000594828 DDHD2O94830 711 aa26.03■■□□□ 1.76
LSM4-204ENST00000594828 ALDH2P05091 517 aa26.03■■□□□ 1.76
LSM4-204ENST00000594828 ARF4P18085 180 aaPredicted RBP26.03■■□□□ 1.76
LSM4-204ENST00000594828 MUTP22033 750 aa26.03■■□□□ 1.76
LSM4-204ENST00000594828 SLC11A1P49279 550 aa26.03■■□□□ 1.76
LSM4-204ENST00000594828 LLGL2Q6P1M3 1020 aa26.03■■□□□ 1.76
LSM4-204ENST00000594828 PADI6Q6TGC4 694 aa26.03■■□□□ 1.76
LSM4-204ENST00000594828 TMX3Q96JJ7 454 aa26.03■■□□□ 1.76
LSM4-204ENST00000594828 LRWD1Q9UFC0 647 aa26.03■■□□□ 1.76
LSM4-204ENST00000594828 PCDHB6Q9Y5E3 794 aa26.03■■□□□ 1.76
LSM4-204ENST00000594828 ARHGEF35A5YM69 484 aa26.02■■□□□ 1.76
LSM4-204ENST00000594828 POMCP01189 267 aa26.02■■□□□ 1.76
LSM4-204ENST00000594828 CCT6AP40227 531 aaKnown RBP26.02■■□□□ 1.76
LSM4-204ENST00000594828 PTGDRQ13258 359 aa26.02■■□□□ 1.76
LSM4-204ENST00000594828 PDIA5Q14554 519 aa26.02■■□□□ 1.76
LSM4-204ENST00000594828 ANKRD54Q6NXT1 300 aa26.02■■□□□ 1.76
LSM4-204ENST00000594828 TRIM6Q9C030 488 aaPredicted RBP26.02■■□□□ 1.76
LSM4-204ENST00000594828 ZBP1Q9H171 429 aa26.02■■□□□ 1.76
LSM4-204ENST00000594828 RNF39Q9H2S5 420 aa26.02■■□□□ 1.76
LSM4-204ENST00000594828 B4GALT3O60512 393 aa26.01■■□□□ 1.75
LSM4-204ENST00000594828 CYP11B2P19099 503 aa26.01■■□□□ 1.75
LSM4-204ENST00000594828 MCTP1Q6DN14 999 aa26.01■■□□□ 1.75
LSM4-204ENST00000594828 BCL7CQ8WUZ0 217 aaPredicted RBP26.01■■□□□ 1.75
LSM4-204ENST00000594828 TMEM175Q9BSA9 504 aa26.01■■□□□ 1.75
LSM4-204ENST00000594828 RAB34Q9BZG1 259 aa26.01■■□□□ 1.75
LSM4-204ENST00000594828 C11orf16Q9NQ32 467 aa26.01■■□□□ 1.75
LSM4-204ENST00000594828 FAN1Q9Y2M0 1017 aa26.01■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms