RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 P4HBP07237 508 aaKnown RBP13.94□□□□□ -0.18
UPF1-203ENST00000594504 EPCAMP16422 314 aa13.94□□□□□ -0.18
UPF1-203ENST00000594504 GJB2P29033 226 aa13.94□□□□□ -0.18
UPF1-203ENST00000594504 SLC11A1P49279 550 aa13.94□□□□□ -0.18
UPF1-203ENST00000594504 POLGP54098 1239 aaPredicted RBP13.94□□□□□ -0.18
UPF1-203ENST00000594504 SIGLEC14Q08ET2 396 aa13.94□□□□□ -0.18
UPF1-203ENST00000594504 EPHA7Q15375 998 aa13.94□□□□□ -0.18
UPF1-203ENST00000594504 UBXN11Q5T124 520 aa13.94□□□□□ -0.18
UPF1-203ENST00000594504 RARS2Q5T160 578 aaKnown RBP13.94□□□□□ -0.18
UPF1-203ENST00000594504 PPP4R3AQ6IN85 833 aa13.94□□□□□ -0.18
UPF1-203ENST00000594504 AGMOQ6ZNB7 445 aa13.94□□□□□ -0.18
UPF1-203ENST00000594504 SNX21Q969T3 373 aa13.94□□□□□ -0.18
UPF1-203ENST00000594504 ASIC4Q96FT7 647 aa13.94□□□□□ -0.18
UPF1-203ENST00000594504 IGSF21Q96ID5 467 aa13.94□□□□□ -0.18
UPF1-203ENST00000594504 FAM20AQ96MK3 541 aa13.94□□□□□ -0.18
UPF1-203ENST00000594504 VN1R3Q9BXE9 311 aa13.94□□□□□ -0.18
UPF1-203ENST00000594504 ADAM7Q9H2U9 754 aa13.94□□□□□ -0.18
UPF1-203ENST00000594504 FOXP1Q9H334 677 aaPredicted RBP13.94□□□□□ -0.18
UPF1-203ENST00000594504 DHX33Q9H6R0 707 aaKnown RBP13.94□□□□□ -0.18
UPF1-203ENST00000594504 PCDHB2Q9Y5E7 798 aa13.94□□□□□ -0.18
UPF1-203ENST00000594504 A0A087WWV3 80 aa13.93□□□□□ -0.18
UPF1-203ENST00000594504 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13.93□□□□□ -0.18
UPF1-203ENST00000594504 C2CD4DB7Z1M9 353 aa13.93□□□□□ -0.18
UPF1-203ENST00000594504 ZNF623O75123 536 aa13.93□□□□□ -0.18
UPF1-203ENST00000594504 PDGFBP01127 241 aaPredicted RBP13.93□□□□□ -0.18
UPF1-203ENST00000594504 SSBP05455 408 aaKnown RBP eCLIP13.93□□□□□ -0.18
UPF1-203ENST00000594504 SKIP12755 728 aa13.93□□□□□ -0.18
UPF1-203ENST00000594504 HOXB8P17481 243 aaPredicted RBP13.93□□□□□ -0.18
UPF1-203ENST00000594504 HOXA11P31270 313 aaPredicted RBP13.93□□□□□ -0.18
UPF1-203ENST00000594504 YWHABP31946 246 aaKnown RBP13.93□□□□□ -0.18
UPF1-203ENST00000594504 CYP4A11Q02928 519 aa13.93□□□□□ -0.18
UPF1-203ENST00000594504 RNASELQ05823 741 aaKnown RBP13.93□□□□□ -0.18
UPF1-203ENST00000594504 LAMTOR4Q0VGL1 99 aa13.93□□□□□ -0.18
UPF1-203ENST00000594504 PTPN21Q16825 1174 aa13.93□□□□□ -0.18
UPF1-203ENST00000594504 GLB1LQ6UWU2 654 aa13.93□□□□□ -0.18
UPF1-203ENST00000594504 ZBTB33Q86T24 672 aa13.93□□□□□ -0.18
UPF1-203ENST00000594504 DDX53Q86TM3 631 aaKnown RBP13.93□□□□□ -0.18
UPF1-203ENST00000594504 C4orf19Q8IY42 314 aa13.93□□□□□ -0.18
UPF1-203ENST00000594504 SLC7A3Q8WY07 619 aa13.93□□□□□ -0.18
UPF1-203ENST00000594504 JPH2Q9BR39 696 aaPredicted RBP13.93□□□□□ -0.18
UPF1-203ENST00000594504 LXNQ9BS40 222 aa13.93□□□□□ -0.18
UPF1-203ENST00000594504 KCNH6Q9H252 994 aa13.93□□□□□ -0.18
UPF1-203ENST00000594504 SMOC2Q9H3U7 446 aa13.93□□□□□ -0.18
UPF1-203ENST00000594504 AGPAT5Q9NUQ2 364 aa13.93□□□□□ -0.18
UPF1-203ENST00000594504 SLITRK3O94933 977 aa13.92□□□□□ -0.18
UPF1-203ENST00000594504 POMCP01189 267 aa13.92□□□□□ -0.18
UPF1-203ENST00000594504 CTSAP10619 480 aa13.92□□□□□ -0.18
UPF1-203ENST00000594504 VCPP55072 806 aaKnown RBP13.92□□□□□ -0.18
UPF1-203ENST00000594504 SPIRE1Q08AE8 756 aa13.92□□□□□ -0.18
UPF1-203ENST00000594504 GNL2Q13823 731 aaKnown RBP13.92□□□□□ -0.18
UPF1-203ENST00000594504 TPRNQ4KMQ1 711 aa13.92□□□□□ -0.18
UPF1-203ENST00000594504 XKR9Q5GH70 373 aa13.92□□□□□ -0.18
UPF1-203ENST00000594504 CES5AQ6NT32 575 aa13.92□□□□□ -0.18
UPF1-203ENST00000594504 SRGAP1Q7Z6B7 1085 aa13.92□□□□□ -0.18
UPF1-203ENST00000594504 MRPL10Q7Z7H8 261 aaKnown RBP13.92□□□□□ -0.18
UPF1-203ENST00000594504 TPH2Q8IWU9 490 aa13.92□□□□□ -0.18
UPF1-203ENST00000594504 SUGP1Q8IWZ8 645 aaKnown RBP13.92□□□□□ -0.18
UPF1-203ENST00000594504 FBXL6Q8N531 539 aa13.92□□□□□ -0.18
UPF1-203ENST00000594504 RNF149Q8NC42 400 aa13.92□□□□□ -0.18
UPF1-203ENST00000594504 SLC22A17Q8WUG5 538 aa13.92□□□□□ -0.18
UPF1-203ENST00000594504 PGBD4Q96DM1 585 aa13.92□□□□□ -0.18
UPF1-203ENST00000594504 INTS4Q96HW7 963 aaKnown RBP13.92□□□□□ -0.18
UPF1-203ENST00000594504 MIOSQ9NXC5 875 aa13.92□□□□□ -0.18
UPF1-203ENST00000594504 MYO10Q9HD67 2058 aa13.92□□□□□ -0.18
UPF1-203ENST00000594504 WNT7AO00755 349 aa13.91□□□□□ -0.18
UPF1-203ENST00000594504 TBX3O15119 743 aa13.91□□□□□ -0.18
UPF1-203ENST00000594504 DKC1O60832 514 aaKnown RBP eCLIP13.91□□□□□ -0.18
UPF1-203ENST00000594504 U2AF2P26368 475 aaKnown RBP eCLIP13.91□□□□□ -0.18
UPF1-203ENST00000594504 RAB27AP51159 221 aa13.91□□□□□ -0.18
UPF1-203ENST00000594504 ITIH3Q06033 890 aa13.91□□□□□ -0.18
UPF1-203ENST00000594504 BMS1Q14692 1282 aaKnown RBP13.91□□□□□ -0.18
UPF1-203ENST00000594504 EMC2Q15006 297 aa13.91□□□□□ -0.18
UPF1-203ENST00000594504 FERMT3Q86UX7 667 aa13.91□□□□□ -0.18
UPF1-203ENST00000594504 NOSTRINQ8IVI9 506 aa13.91□□□□□ -0.18
UPF1-203ENST00000594504 HSCBQ8IWL3 235 aa13.91□□□□□ -0.18
UPF1-203ENST00000594504 TMEM87AQ8NBN3 555 aa13.91□□□□□ -0.18
UPF1-203ENST00000594504 KREMEN2Q8NCW0 462 aa13.91□□□□□ -0.18
UPF1-203ENST00000594504 SMG8Q8ND04 991 aaKnown RBP13.91□□□□□ -0.18
UPF1-203ENST00000594504 PSPC1Q8WXF1 523 aaKnown RBP13.91□□□□□ -0.18
UPF1-203ENST00000594504 CPB2Q96IY4 423 aa13.91□□□□□ -0.18
UPF1-203ENST00000594504 KLHL5Q96PQ7 755 aa13.91□□□□□ -0.18
UPF1-203ENST00000594504 EIF2AQ9BY44 585 aaKnown RBP13.91□□□□□ -0.18
UPF1-203ENST00000594504 RNF39Q9H2S5 420 aa13.91□□□□□ -0.18
UPF1-203ENST00000594504 RSAD1Q9HA92 442 aa13.91□□□□□ -0.18
UPF1-203ENST00000594504 XPNPEP1Q9NQW7 623 aa13.91□□□□□ -0.18
UPF1-203ENST00000594504 FAN1Q9Y2M0 1017 aa13.91□□□□□ -0.18
UPF1-203ENST00000594504 KMT2EQ8IZD2 1858 aa13.91□□□□□ -0.18
UPF1-203ENST00000594504 H3BQV1 296 aa13.9□□□□□ -0.18
UPF1-203ENST00000594504 NRP1O14786 923 aa13.9□□□□□ -0.18
UPF1-203ENST00000594504 BAG4O95429 457 aaKnown RBP13.9□□□□□ -0.18
UPF1-203ENST00000594504 ALDH2P05091 517 aa13.9□□□□□ -0.18
UPF1-203ENST00000594504 ASGR2P07307 311 aa13.9□□□□□ -0.18
UPF1-203ENST00000594504 MYBP10242 640 aa13.9□□□□□ -0.18
UPF1-203ENST00000594504 AVPR2P30518 371 aa13.9□□□□□ -0.18
UPF1-203ENST00000594504 RFC5P40937 340 aa13.9□□□□□ -0.18
UPF1-203ENST00000594504 TCF15Q12870 199 aa13.9□□□□□ -0.18
UPF1-203ENST00000594504 PTPN14Q15678 1187 aa13.9□□□□□ -0.18
UPF1-203ENST00000594504 LARP1BQ659C4 914 aaKnown RBP13.9□□□□□ -0.18
UPF1-203ENST00000594504 TMC5Q6UXY8 1006 aa13.9□□□□□ -0.18
UPF1-203ENST00000594504 OTUD6AQ7L8S5 288 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms