RNA–Protein interactions for RNA: ENST00000589941.1

SMAD4-209, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-209ENST00000589941 ASIC4Q96FT7 647 aa9.31□□□□□ -0.92
SMAD4-209ENST00000589941 TGS1Q96RS0 853 aaKnown RBP9.31□□□□□ -0.92
SMAD4-209ENST00000589941 DUSP23Q9BVJ7 150 aa9.31□□□□□ -0.92
SMAD4-209ENST00000589941 USP44Q9H0E7 712 aa9.31□□□□□ -0.92
SMAD4-209ENST00000589941 CLDND1Q9NY35 253 aa9.31□□□□□ -0.92
SMAD4-209ENST00000589941 HOXC10Q9NYD6 342 aa9.31□□□□□ -0.92
SMAD4-209ENST00000589941 ANKRD11Q6UB99 2663 aaPredicted RBP9.31□□□□□ -0.92
SMAD4-209ENST00000589941 EP300Q09472 2414 aaPredicted RBP9.31□□□□□ -0.92
SMAD4-209ENST00000589941 DNAJC25-GNG10A0A024R161 153 aa9.3□□□□□ -0.92
SMAD4-209ENST00000589941 A0A1B0GUL7 405 aa9.3□□□□□ -0.92
SMAD4-209ENST00000589941 MBTPS2O43462 519 aa9.3□□□□□ -0.92
SMAD4-209ENST00000589941 TBX10O75333 385 aa9.3□□□□□ -0.92
SMAD4-209ENST00000589941 SLC25A27O95847 323 aa9.3□□□□□ -0.92
SMAD4-209ENST00000589941 BPNT1O95861 308 aa9.3□□□□□ -0.92
SMAD4-209ENST00000589941 PGRP06401 933 aa9.3□□□□□ -0.92
SMAD4-209ENST00000589941 AVPR2P30518 371 aa9.3□□□□□ -0.92
SMAD4-209ENST00000589941 SSTR4P31391 388 aa9.3□□□□□ -0.92
SMAD4-209ENST00000589941 NKX3-2P78367 333 aa9.3□□□□□ -0.92
SMAD4-209ENST00000589941 ZXDAP98168 799 aa9.3□□□□□ -0.92
SMAD4-209ENST00000589941 GPNMBQ14956 572 aa9.3□□□□□ -0.92
SMAD4-209ENST00000589941 CERKLQ49MI3 558 aaPredicted RBP9.3□□□□□ -0.92
SMAD4-209ENST00000589941 ARMCX2Q7L311 632 aa9.3□□□□□ -0.92
SMAD4-209ENST00000589941 ARMCX6Q7L4S7 300 aa9.3□□□□□ -0.92
SMAD4-209ENST00000589941 TLK2Q86UE8 772 aa9.3□□□□□ -0.92
SMAD4-209ENST00000589941 MRPL38Q96DV4 380 aaKnown RBP9.3□□□□□ -0.92
SMAD4-209ENST00000589941 UPF3BQ9BZI7 483 aaKnown RBP9.3□□□□□ -0.92
SMAD4-209ENST00000589941 RIPK3Q9Y572 518 aa9.3□□□□□ -0.92
SMAD4-209ENST00000589941 TNKSO95271 1327 aa9.3□□□□□ -0.92
SMAD4-209ENST00000589941 KIF28PB7ZC32 967 aa9.29□□□□□ -0.92
SMAD4-209ENST00000589941 MPP2Q14168 576 aa9.29□□□□□ -0.92
SMAD4-209ENST00000589941 FSCN1Q16658 493 aaKnown RBP9.29□□□□□ -0.92
SMAD4-209ENST00000589941 NAA16Q6N069 864 aaPredicted RBP9.29□□□□□ -0.92
SMAD4-209ENST00000589941 DGLUCYQ7Z3D6 616 aa9.29□□□□□ -0.92
SMAD4-209ENST00000589941 HID1Q8IV36 788 aa9.29□□□□□ -0.92
SMAD4-209ENST00000589941 KCT2Q8NC54 265 aa9.29□□□□□ -0.92
SMAD4-209ENST00000589941 EXOC6Q8TAG9 804 aa9.29□□□□□ -0.92
SMAD4-209ENST00000589941 PPIL4Q8WUA2 492 aaKnown RBP eCLIP9.29□□□□□ -0.92
SMAD4-209ENST00000589941 FTOQ9C0B1 505 aaKnown RBP eCLIP9.29□□□□□ -0.92
SMAD4-209ENST00000589941 SPC25Q9HBM1 224 aa9.29□□□□□ -0.92
SMAD4-209ENST00000589941 UBP1Q9NZI7 540 aa9.29□□□□□ -0.92
SMAD4-209ENST00000589941 TJP2Q9UDY2 1190 aa9.29□□□□□ -0.92
SMAD4-209ENST00000589941 SERPINB13Q9UIV8 391 aa9.29□□□□□ -0.92
SMAD4-209ENST00000589941 ADAMTS5Q9UNA0 930 aa9.29□□□□□ -0.92
SMAD4-209ENST00000589941 U3KQE9 123 aa9.29□□□□□ -0.92
SMAD4-209ENST00000589941 PLXNA4Q9HCM2 1894 aa9.29□□□□□ -0.92
SMAD4-209ENST00000589941 FRYQ5TBA9 3013 aa9.28□□□□□ -0.92
SMAD4-209ENST00000589941 FANCMQ8IYD8 2048 aa9.28□□□□□ -0.92
SMAD4-209ENST00000589941 STXBP3O00186 592 aa9.28□□□□□ -0.92
SMAD4-209ENST00000589941 LRIG2O94898 1065 aa9.28□□□□□ -0.92
SMAD4-209ENST00000589941 GJB5O95377 273 aa9.28□□□□□ -0.92
SMAD4-209ENST00000589941 IQCF3P0C7M6 154 aa9.28□□□□□ -0.92
SMAD4-209ENST00000589941 GTF2F1P35269 517 aaKnown RBP eCLIP9.28□□□□□ -0.92
SMAD4-209ENST00000589941 KCNJ6P48051 423 aa9.28□□□□□ -0.92
SMAD4-209ENST00000589941 CD97P48960 835 aa9.28□□□□□ -0.92
SMAD4-209ENST00000589941 RBM25P49756 843 aaKnown RBP9.28□□□□□ -0.92
SMAD4-209ENST00000589941 PLCD1P51178 756 aa9.28□□□□□ -0.92
SMAD4-209ENST00000589941 TIGD5Q53EQ6 642 aa9.28□□□□□ -0.92
SMAD4-209ENST00000589941 REC114Q7Z4M0 266 aa9.28□□□□□ -0.92
SMAD4-209ENST00000589941 SIAH1Q8IUQ4 282 aa9.28□□□□□ -0.92
SMAD4-209ENST00000589941 CCDC144CPQ8IYA2 1237 aa9.28□□□□□ -0.92
SMAD4-209ENST00000589941 MSL3Q8N5Y2 521 aaKnown RBP9.28□□□□□ -0.92
SMAD4-209ENST00000589941 ACSF2Q96CM8 615 aaPredicted RBP9.28□□□□□ -0.92
SMAD4-209ENST00000589941 EAF1Q96JC9 268 aaPredicted RBP9.28□□□□□ -0.92
SMAD4-209ENST00000589941 NOL10Q9BSC4 688 aaKnown RBP9.28□□□□□ -0.92
SMAD4-209ENST00000589941 FOXQ1Q9C009 403 aa9.28□□□□□ -0.92
SMAD4-209ENST00000589941 DDX41Q9UJV9 622 aaKnown RBP9.28□□□□□ -0.92
SMAD4-209ENST00000589941 VWA5AO00534 786 aa9.27□□□□□ -0.93
SMAD4-209ENST00000589941 LINC01565O15544 149 aa9.27□□□□□ -0.93
SMAD4-209ENST00000589941 CYP26A1O43174 497 aa9.27□□□□□ -0.93
SMAD4-209ENST00000589941 BAIAP3O94812 1187 aa9.27□□□□□ -0.93
SMAD4-209ENST00000589941 ARP10275 920 aa9.27□□□□□ -0.93
SMAD4-209ENST00000589941 FOSL1P15407 271 aa9.27□□□□□ -0.93
SMAD4-209ENST00000589941 STAT3P40763 770 aa9.27□□□□□ -0.93
SMAD4-209ENST00000589941 IL15P40933 162 aaPredicted RBP9.27□□□□□ -0.93
SMAD4-209ENST00000589941 CYP27A1Q02318 531 aa9.27□□□□□ -0.93
SMAD4-209ENST00000589941 TFCP2Q12800 502 aa9.27□□□□□ -0.93
SMAD4-209ENST00000589941 PKN1Q16512 942 aa9.27□□□□□ -0.93
SMAD4-209ENST00000589941 PRAMEF13Q5VWM6 474 aa9.27□□□□□ -0.93
SMAD4-209ENST00000589941 FAM214BQ7L5A3 538 aa9.27□□□□□ -0.93
SMAD4-209ENST00000589941 MIGA1Q8NAN2 632 aa9.27□□□□□ -0.93
SMAD4-209ENST00000589941 DPH2Q9BQC3 489 aaPredicted RBP9.27□□□□□ -0.93
SMAD4-209ENST00000589941 LRRC3Q9BY71 257 aa9.27□□□□□ -0.93
SMAD4-209ENST00000589941 ABHD16BQ9H3Z7 469 aa9.27□□□□□ -0.93
SMAD4-209ENST00000589941 LRRC4CQ9HCJ2 640 aa9.27□□□□□ -0.93
SMAD4-209ENST00000589941 LRP2BPQ9P2M1 347 aa9.27□□□□□ -0.93
SMAD4-209ENST00000589941 FAM50BQ9Y247 325 aa9.27□□□□□ -0.93
SMAD4-209ENST00000589941 SPEGQ15772 3267 aa9.27□□□□□ -0.93
SMAD4-209ENST00000589941 IL16Q14005 1332 aa9.27□□□□□ -0.93
SMAD4-209ENST00000589941 FAM208BQ5VWN6 2430 aa9.26□□□□□ -0.93
SMAD4-209ENST00000589941 SCO2A0A1W2PP80 73 aa9.26□□□□□ -0.93
SMAD4-209ENST00000589941 MPHOSPH10O00566 681 aaKnown RBP9.26□□□□□ -0.93
SMAD4-209ENST00000589941 HYAL3O43820 417 aaPredicted RBP9.26□□□□□ -0.93
SMAD4-209ENST00000589941 CABYRO75952 493 aa9.26□□□□□ -0.93
SMAD4-209ENST00000589941 SLITRK5O94991 958 aa9.26□□□□□ -0.93
SMAD4-209ENST00000589941 CSPG5O95196 566 aa9.26□□□□□ -0.93
SMAD4-209ENST00000589941 BAG3O95817 575 aa9.26□□□□□ -0.93
SMAD4-209ENST00000589941 PLCG1P19174 1290 aa9.26□□□□□ -0.93
SMAD4-209ENST00000589941 RFC2P35250 354 aa9.26□□□□□ -0.93
SMAD4-209ENST00000589941 CNTN2Q02246 1040 aa9.26□□□□□ -0.93
SMAD4-209ENST00000589941 TNFAIP2Q03169 654 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms