RNA–Protein interactions for RNA: ENST00000588857.5

ATG4D-209, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4D, Length 1,555 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-209ENST00000588857 PPP1R13LQ8WUF5 828 aa24.37■■□□□ 1.49
ATG4D-209ENST00000588857 NOC4LQ9BVI4 516 aaKnown RBP24.37■■□□□ 1.49
ATG4D-209ENST00000588857 PAK6Q9NQU5 681 aaPredicted RBP24.37■■□□□ 1.49
ATG4D-209ENST00000588857 FRMD4BQ9Y2L6 1034 aa24.37■■□□□ 1.49
ATG4D-209ENST00000588857 MBLAC1A4D2B0 266 aaPredicted RBP24.37■■□□□ 1.49
ATG4D-209ENST00000588857 GOLGA6L6A8MZA4 724 aa24.37■■□□□ 1.49
ATG4D-209ENST00000588857 ASGR1P07306 291 aa24.37■■□□□ 1.49
ATG4D-209ENST00000588857 ARMCX5Q6P1M9 558 aa24.37■■□□□ 1.49
ATG4D-209ENST00000588857 FRMD5Q7Z6J6 570 aa24.37■■□□□ 1.49
ATG4D-209ENST00000588857 U2AF1L4Q8WU68 220 aaKnown RBP24.37■■□□□ 1.49
ATG4D-209ENST00000588857 TMEM174Q8WUU8 243 aa24.37■■□□□ 1.49
ATG4D-209ENST00000588857 INTS13Q9NVM9 706 aa24.37■■□□□ 1.49
ATG4D-209ENST00000588857 DMAC2Q9NW81 257 aa24.37■■□□□ 1.49
ATG4D-209ENST00000588857 HDAC6Q9UBN7 1215 aa24.37■■□□□ 1.49
ATG4D-209ENST00000588857 EXOC3O60645 756 aa24.36■■□□□ 1.49
ATG4D-209ENST00000588857 SGPL1O95470 568 aa24.36■■□□□ 1.49
ATG4D-209ENST00000588857 PSMC2P35998 433 aaKnown RBP24.36■■□□□ 1.49
ATG4D-209ENST00000588857 PHKA2P46019 1235 aa24.36■■□□□ 1.49
ATG4D-209ENST00000588857 LIG4P49917 911 aa24.36■■□□□ 1.49
ATG4D-209ENST00000588857 MARSP56192 900 aaKnown RBP24.36■■□□□ 1.49
ATG4D-209ENST00000588857 POU5F1BQ06416 359 aa24.36■■□□□ 1.49
ATG4D-209ENST00000588857 MAN2A1Q16706 1144 aa24.36■■□□□ 1.49
ATG4D-209ENST00000588857 KIAA0319LQ8IZA0 1049 aa24.36■■□□□ 1.49
ATG4D-209ENST00000588857 METTL14Q9HCE5 456 aaKnown RBP24.36■■□□□ 1.49
ATG4D-209ENST00000588857 ARMCX3Q9UH62 379 aaPredicted RBP24.36■■□□□ 1.49
ATG4D-209ENST00000588857 SMIM35A0A1B0GVV1 85 aa24.35■■□□□ 1.49
ATG4D-209ENST00000588857 LGALS16A8MUM7 142 aa24.35■■□□□ 1.49
ATG4D-209ENST00000588857 TISP43B9A030 160 aa24.35■■□□□ 1.49
ATG4D-209ENST00000588857 AKAP3O75969 853 aa24.35■■□□□ 1.49
ATG4D-209ENST00000588857 VTNP04004 478 aa24.35■■□□□ 1.49
ATG4D-209ENST00000588857 CYP2C9P11712 490 aa24.35■■□□□ 1.49
ATG4D-209ENST00000588857 MAPK6Q16659 721 aa24.35■■□□□ 1.49
ATG4D-209ENST00000588857 NBPF20Q3BBV1 942 aa24.35■■□□□ 1.49
ATG4D-209ENST00000588857 TMC6Q7Z403 805 aa24.35■■□□□ 1.49
ATG4D-209ENST00000588857 DEFB118Q96PH6 123 aa24.35■■□□□ 1.49
ATG4D-209ENST00000588857 MKNK1Q9BUB5 465 aa24.35■■□□□ 1.49
ATG4D-209ENST00000588857 XRN2Q9H0D6 950 aaKnown RBP eCLIP24.35■■□□□ 1.49
ATG4D-209ENST00000588857 PCIF1Q9H4Z3 704 aa24.35■■□□□ 1.49
ATG4D-209ENST00000588857 ANKRD63C9JTQ0 380 aa24.34■■□□□ 1.49
ATG4D-209ENST00000588857 TEX33O43247 280 aa24.34■■□□□ 1.49
ATG4D-209ENST00000588857 CAPN2P17655 700 aa24.34■■□□□ 1.49
ATG4D-209ENST00000588857 PTENP60484 403 aa24.34■■□□□ 1.49
ATG4D-209ENST00000588857 ADAM17P78536 824 aa24.34■■□□□ 1.49
ATG4D-209ENST00000588857 CDC42EP1Q00587 391 aa24.34■■□□□ 1.49
ATG4D-209ENST00000588857 UBXN1Q04323 297 aa24.34■■□□□ 1.49
ATG4D-209ENST00000588857 CCSAPQ6IQ19 270 aaPredicted RBP24.34■■□□□ 1.49
ATG4D-209ENST00000588857 VSTM4Q8IW00 320 aa24.34■■□□□ 1.49
ATG4D-209ENST00000588857 FAM186BQ8IYM0 893 aa24.34■■□□□ 1.49
ATG4D-209ENST00000588857 XXYLT1Q8NBI6 393 aa24.34■■□□□ 1.49
ATG4D-209ENST00000588857 ZNF668Q96K58 619 aaPredicted RBP24.34■■□□□ 1.49
ATG4D-209ENST00000588857 SCLT1Q96NL6 688 aa24.34■■□□□ 1.49
ATG4D-209ENST00000588857 CBWD1Q9BRT8 395 aa24.34■■□□□ 1.49
ATG4D-209ENST00000588857 NFKBIZQ9BYH8 718 aa24.34■■□□□ 1.49
ATG4D-209ENST00000588857 FAM49AQ9H0Q0 323 aaPredicted RBP24.34■■□□□ 1.49
ATG4D-209ENST00000588857 HSPBP1Q9NZL4 362 aa24.34■■□□□ 1.49
ATG4D-209ENST00000588857 MKI67P46013 3256 aaKnown RBP24.34■■□□□ 1.49
ATG4D-209ENST00000588857 INO80B-WBP1J3KQ70 363 aa24.33■■□□□ 1.49
ATG4D-209ENST00000588857 CABYRO75952 493 aa24.33■■□□□ 1.49
ATG4D-209ENST00000588857 CASP4P49662 377 aa24.33■■□□□ 1.49
ATG4D-209ENST00000588857 VWA3BQ502W6 1294 aa24.33■■□□□ 1.49
ATG4D-209ENST00000588857 NLRP7Q8WX94 980 aa24.33■■□□□ 1.49
ATG4D-209ENST00000588857 POMGNT1Q8WZA1 660 aa24.33■■□□□ 1.49
ATG4D-209ENST00000588857 INO80BQ9C086 356 aaPredicted RBP24.33■■□□□ 1.49
ATG4D-209ENST00000588857 CCDC113Q9H0I3 377 aa24.33■■□□□ 1.49
ATG4D-209ENST00000588857 UTP18Q9Y5J1 556 aaKnown RBP eCLIP24.33■■□□□ 1.49
ATG4D-209ENST00000588857 A0A087WZ62 844 aa24.33■■□□□ 1.48
ATG4D-209ENST00000588857 TREHO43280 583 aa24.33■■□□□ 1.48
ATG4D-209ENST00000588857 PIGRP01833 764 aa24.33■■□□□ 1.48
ATG4D-209ENST00000588857 PRKCBP05771 671 aa24.33■■□□□ 1.48
ATG4D-209ENST00000588857 HOXC8P31273 242 aa24.33■■□□□ 1.48
ATG4D-209ENST00000588857 HIC1Q14526 733 aa24.33■■□□□ 1.48
ATG4D-209ENST00000588857 MIIPQ5JXC2 388 aa24.33■■□□□ 1.48
ATG4D-209ENST00000588857 FKBP15Q5T1M5 1219 aa24.33■■□□□ 1.48
ATG4D-209ENST00000588857 LHX8Q68G74 356 aa24.33■■□□□ 1.48
ATG4D-209ENST00000588857 TRIM59Q8IWR1 403 aa24.33■■□□□ 1.48
ATG4D-209ENST00000588857 TRIM44Q96DX7 344 aaPredicted RBP24.33■■□□□ 1.48
ATG4D-209ENST00000588857 PPP1R16BQ96T49 567 aa24.33■■□□□ 1.48
ATG4D-209ENST00000588857 FDXACB1Q9BRP7 624 aaPredicted RBP24.33■■□□□ 1.48
ATG4D-209ENST00000588857 MRPL4Q9BYD3 311 aaKnown RBP24.33■■□□□ 1.48
ATG4D-209ENST00000588857 NDST4Q9H3R1 872 aa24.33■■□□□ 1.48
ATG4D-209ENST00000588857 GARTP22102 1010 aa24.32■■□□□ 1.48
ATG4D-209ENST00000588857 ADSSP30520 456 aa24.32■■□□□ 1.48
ATG4D-209ENST00000588857 NLRP11P59045 1033 aaKnown RBP24.32■■□□□ 1.48
ATG4D-209ENST00000588857 FAM47CQ5HY64 1035 aa24.32■■□□□ 1.48
ATG4D-209ENST00000588857 SPECC1LQ69YQ0 1117 aa24.32■■□□□ 1.48
ATG4D-209ENST00000588857 SLFN12LQ6IEE8 588 aa24.32■■□□□ 1.48
ATG4D-209ENST00000588857 SLC39A4Q6P5W5 647 aa24.32■■□□□ 1.48
ATG4D-209ENST00000588857 ZPBP2Q6X784 338 aa24.32■■□□□ 1.48
ATG4D-209ENST00000588857 RUFY4Q6ZNE9 571 aa24.32■■□□□ 1.48
ATG4D-209ENST00000588857 ZNF410Q86VK4 478 aa24.32■■□□□ 1.48
ATG4D-209ENST00000588857 VTI1AQ96AJ9 217 aa24.32■■□□□ 1.48
ATG4D-209ENST00000588857 TARS2Q9BW92 718 aaKnown RBP24.32■■□□□ 1.48
ATG4D-209ENST00000588857 CRISPLD2Q9H0B8 497 aa24.32■■□□□ 1.48
ATG4D-209ENST00000588857 IMPACTQ9P2X3 320 aa24.32■■□□□ 1.48
ATG4D-209ENST00000588857 GTF2IRD1Q9UHL9 959 aa24.32■■□□□ 1.48
ATG4D-209ENST00000588857 TFRCP02786 760 aaKnown RBP24.31■■□□□ 1.48
ATG4D-209ENST00000588857 GPC3P51654 580 aa24.31■■□□□ 1.48
ATG4D-209ENST00000588857 ACLYP53396 1101 aa24.31■■□□□ 1.48
ATG4D-209ENST00000588857 ZNF200P98182 395 aaPredicted RBP24.31■■□□□ 1.48
ATG4D-209ENST00000588857 PPP2R3AQ06190 1150 aa24.31■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms