RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 ADH7P40394 386 aa5.92□□□□□ -1.46
LIG3-210ENST00000588109 CTCFP49711 727 aaPredicted RBP5.92□□□□□ -1.46
LIG3-210ENST00000588109 ACTR2P61160 394 aa5.92□□□□□ -1.46
LIG3-210ENST00000588109 MTMR3Q13615 1198 aa5.92□□□□□ -1.46
LIG3-210ENST00000588109 CTTNQ14247 550 aaKnown RBP5.92□□□□□ -1.46
LIG3-210ENST00000588109 EPHA7Q15375 998 aa5.92□□□□□ -1.46
LIG3-210ENST00000588109 KLHL40Q2TBA0 621 aa5.92□□□□□ -1.46
LIG3-210ENST00000588109 DUSP28Q4G0W2 176 aa5.92□□□□□ -1.46
LIG3-210ENST00000588109 BRDTQ58F21 947 aaPredicted RBP5.92□□□□□ -1.46
LIG3-210ENST00000588109 GJC2Q5T442 439 aaPredicted RBP5.92□□□□□ -1.46
LIG3-210ENST00000588109 UTP14CQ5TAP6 766 aaKnown RBP5.92□□□□□ -1.46
LIG3-210ENST00000588109 TTC39BQ5VTQ0 682 aaPredicted RBP5.92□□□□□ -1.46
LIG3-210ENST00000588109 FAM160B1Q5W0V3 765 aa5.92□□□□□ -1.46
LIG3-210ENST00000588109 CAVIN1Q6NZI2 390 aaKnown RBP5.92□□□□□ -1.46
LIG3-210ENST00000588109 CCDC62Q6P9F0 684 aa5.92□□□□□ -1.46
LIG3-210ENST00000588109 C1orf229Q6ZS94 237 aaPredicted RBP5.92□□□□□ -1.46
LIG3-210ENST00000588109 CHSY3Q70JA7 882 aa5.92□□□□□ -1.46
LIG3-210ENST00000588109 CATSPER3Q86XQ3 398 aa5.92□□□□□ -1.46
LIG3-210ENST00000588109 TPH2Q8IWU9 490 aa5.92□□□□□ -1.46
LIG3-210ENST00000588109 IQUBQ8NA54 791 aa5.92□□□□□ -1.46
LIG3-210ENST00000588109 CNNM3Q8NE01 707 aa5.92□□□□□ -1.46
LIG3-210ENST00000588109 RDM1Q8NG50 284 aa5.92□□□□□ -1.46
LIG3-210ENST00000588109 OR6J1Q8NGC5 347 aa5.92□□□□□ -1.46
LIG3-210ENST00000588109 NEK9Q8TD19 979 aa5.92□□□□□ -1.46
LIG3-210ENST00000588109 COPS5Q92905 334 aa5.92□□□□□ -1.46
LIG3-210ENST00000588109 DYDC2Q96IM9 177 aa5.92□□□□□ -1.46
LIG3-210ENST00000588109 EIF2AK1Q9BQI3 630 aaKnown RBP5.92□□□□□ -1.46
LIG3-210ENST00000588109 LXNQ9BS40 222 aa5.92□□□□□ -1.46
LIG3-210ENST00000588109 NT5C3AQ9H0P0 336 aa5.92□□□□□ -1.46
LIG3-210ENST00000588109 AP5M1Q9H0R1 490 aa5.92□□□□□ -1.46
LIG3-210ENST00000588109 NUP62CLQ9H1M0 184 aa5.92□□□□□ -1.46
LIG3-210ENST00000588109 AZI2Q9H6S1 392 aa5.92□□□□□ -1.46
LIG3-210ENST00000588109 BCAS3Q9H6U6 928 aa5.92□□□□□ -1.46
LIG3-210ENST00000588109 TUFT1Q9NNX1 390 aa5.92□□□□□ -1.46
LIG3-210ENST00000588109 ZNF302Q9NR11 478 aa5.92□□□□□ -1.46
LIG3-210ENST00000588109 DDX19AQ9NUU7 478 aaKnown RBP5.92□□□□□ -1.46
LIG3-210ENST00000588109 DACT1Q9NYF0 836 aa5.92□□□□□ -1.46
LIG3-210ENST00000588109 RGL1Q9NZL6 768 aa5.92□□□□□ -1.46
LIG3-210ENST00000588109 GABBR1Q9UBS5 961 aa5.92□□□□□ -1.46
LIG3-210ENST00000588109 NRBP1Q9UHY1 535 aa5.92□□□□□ -1.46
LIG3-210ENST00000588109 HOOK1Q9UJC3 728 aaKnown RBP5.92□□□□□ -1.46
LIG3-210ENST00000588109 HPSEQ9Y251 543 aa5.92□□□□□ -1.46
LIG3-210ENST00000588109 PCDHA10Q9Y5I2 948 aa5.92□□□□□ -1.46
LIG3-210ENST00000588109 PTCH2Q9Y6C5 1203 aa5.92□□□□□ -1.46
LIG3-210ENST00000588109 DOCK5Q9H7D0 1870 aa5.92□□□□□ -1.46
LIG3-210ENST00000588109 FAM237AA0A1B0GTK4 181 aa5.91□□□□□ -1.46
LIG3-210ENST00000588109 ZBTB39O15060 712 aa5.91□□□□□ -1.46
LIG3-210ENST00000588109 DYNC1LI2O43237 492 aaPredicted RBP5.91□□□□□ -1.46
LIG3-210ENST00000588109 MED24O75448 989 aa5.91□□□□□ -1.46
LIG3-210ENST00000588109 MAP3K6O95382 1288 aa5.91□□□□□ -1.46
LIG3-210ENST00000588109 SSBP05455 408 aaKnown RBP eCLIP5.91□□□□□ -1.46
LIG3-210ENST00000588109 P4HBP07237 508 aaKnown RBP5.91□□□□□ -1.46
LIG3-210ENST00000588109 SUPT20HL2P0C7V6 817 aa5.91□□□□□ -1.46
LIG3-210ENST00000588109 RARBP10826 455 aa5.91□□□□□ -1.46
LIG3-210ENST00000588109 HSPA8P11142 646 aaKnown RBP5.91□□□□□ -1.46
LIG3-210ENST00000588109 CYBAP13498 195 aa5.91□□□□□ -1.46
LIG3-210ENST00000588109 MPSTP25325 297 aa5.91□□□□□ -1.46
LIG3-210ENST00000588109 RPA1P27694 616 aa5.91□□□□□ -1.46
LIG3-210ENST00000588109 CCND3P30281 292 aaPredicted RBP5.91□□□□□ -1.46
LIG3-210ENST00000588109 GRK4P32298 578 aa5.91□□□□□ -1.46
LIG3-210ENST00000588109 TCF7P36402 384 aaPredicted RBP5.91□□□□□ -1.46
LIG3-210ENST00000588109 QARSP47897 775 aaKnown RBP5.91□□□□□ -1.46
LIG3-210ENST00000588109 CPT1AP50416 773 aa5.91□□□□□ -1.46
LIG3-210ENST00000588109 LBX1P52954 281 aa5.91□□□□□ -1.46
LIG3-210ENST00000588109 PSMC5P62195 406 aa5.91□□□□□ -1.46
LIG3-210ENST00000588109 ARHGAP1Q07960 439 aa5.91□□□□□ -1.46
LIG3-210ENST00000588109 CACNB2Q08289 660 aaPredicted RBP5.91□□□□□ -1.46
LIG3-210ENST00000588109 GRB10Q13322 594 aa5.91□□□□□ -1.46
LIG3-210ENST00000588109 SNW1Q13573 536 aaKnown RBP5.91□□□□□ -1.46
LIG3-210ENST00000588109 DHX8Q14562 1220 aaKnown RBP5.91□□□□□ -1.46
LIG3-210ENST00000588109 CAMK4Q16566 473 aa5.91□□□□□ -1.46
LIG3-210ENST00000588109 HSDL1Q3SXM5 330 aa5.91□□□□□ -1.46
LIG3-210ENST00000588109 LONRF3Q496Y0 759 aa5.91□□□□□ -1.46
LIG3-210ENST00000588109 SLC9C1Q4G0N8 1177 aa5.91□□□□□ -1.46
LIG3-210ENST00000588109 TMEM63BQ5T3F8 832 aa5.91□□□□□ -1.46
LIG3-210ENST00000588109 CCDC183Q5T5S1 534 aa5.91□□□□□ -1.46
LIG3-210ENST00000588109 SWSAP1Q6NVH7 229 aa5.91□□□□□ -1.46
LIG3-210ENST00000588109 KANK3Q6NY19 840 aa5.91□□□□□ -1.46
LIG3-210ENST00000588109 B3GNT9Q6UX72 402 aa5.91□□□□□ -1.46
LIG3-210ENST00000588109 KRBA2Q6ZNG9 492 aa5.91□□□□□ -1.46
LIG3-210ENST00000588109 TRMT1LQ7Z2T5 733 aaKnown RBP5.91□□□□□ -1.46
LIG3-210ENST00000588109 TLK2Q86UE8 772 aa5.91□□□□□ -1.46
LIG3-210ENST00000588109 GLYCTKQ8IVS8 523 aa5.91□□□□□ -1.46
LIG3-210ENST00000588109 CKAP2LQ8IYA6 745 aa5.91□□□□□ -1.46
LIG3-210ENST00000588109 FMR1NBQ8N0W7 255 aaPredicted RBP5.91□□□□□ -1.46
LIG3-210ENST00000588109 ENGASEQ8NFI3 743 aa5.91□□□□□ -1.46
LIG3-210ENST00000588109 PPTC7Q8NI37 304 aa5.91□□□□□ -1.46
LIG3-210ENST00000588109 AFG1LQ8WV93 481 aa5.91□□□□□ -1.46
LIG3-210ENST00000588109 SEPT1Q8WYJ6 367 aa5.91□□□□□ -1.46
LIG3-210ENST00000588109 GLG1Q92896 1179 aa5.91□□□□□ -1.46
LIG3-210ENST00000588109 ATP6V0A1Q93050 837 aa5.91□□□□□ -1.46
LIG3-210ENST00000588109 LENG1Q96BZ8 264 aaPredicted RBP5.91□□□□□ -1.46
LIG3-210ENST00000588109 NACC1Q96RE7 527 aa5.91□□□□□ -1.46
LIG3-210ENST00000588109 GPR20Q99678 358 aa5.91□□□□□ -1.46
LIG3-210ENST00000588109 MMTAG2Q9BU76 263 aaKnown RBP5.91□□□□□ -1.46
LIG3-210ENST00000588109 POLR3CQ9BUI4 534 aaPredicted RBP5.91□□□□□ -1.46
LIG3-210ENST00000588109 TNMDQ9H2S6 317 aa5.91□□□□□ -1.46
LIG3-210ENST00000588109 CUEDC2Q9H467 287 aa5.91□□□□□ -1.46
LIG3-210ENST00000588109 ZSWIM4Q9H7M6 989 aa5.91□□□□□ -1.46
LIG3-210ENST00000588109 SPC25Q9HBM1 224 aa5.91□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms