RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-208ENST00000583344 FERMT2Q96AC1 680 aa5.97□□□□□ -1.45
SMCHD1-208ENST00000583344 LENG9Q96B70 501 aa5.97□□□□□ -1.45
SMCHD1-208ENST00000583344 ZNF496Q96IT1 587 aaPredicted RBP5.97□□□□□ -1.45
SMCHD1-208ENST00000583344 FDXACB1Q9BRP7 624 aaPredicted RBP5.97□□□□□ -1.45
SMCHD1-208ENST00000583344 CPEB1Q9BZB8 566 aaKnown RBP5.97□□□□□ -1.45
SMCHD1-208ENST00000583344 ENKD1Q9H0I2 346 aa5.97□□□□□ -1.45
SMCHD1-208ENST00000583344 EPC1Q9H2F5 836 aa5.97□□□□□ -1.45
SMCHD1-208ENST00000583344 PIF1Q9H611 641 aa5.97□□□□□ -1.45
SMCHD1-208ENST00000583344 MSRAQ9UJ68 235 aa5.97□□□□□ -1.45
SMCHD1-208ENST00000583344 USP18Q9UMW8 372 aa5.97□□□□□ -1.45
SMCHD1-208ENST00000583344 HOXA3O43365 443 aaPredicted RBP5.96□□□□□ -1.46
SMCHD1-208ENST00000583344 LY86O95711 162 aa5.96□□□□□ -1.46
SMCHD1-208ENST00000583344 ZFP36P26651 326 aaKnown RBP5.96□□□□□ -1.46
SMCHD1-208ENST00000583344 TKFCQ3LXA3 575 aa5.96□□□□□ -1.46
SMCHD1-208ENST00000583344 MBNL2Q5VZF2 373 aaKnown RBP5.96□□□□□ -1.46
SMCHD1-208ENST00000583344 CNNM4Q6P4Q7 775 aa5.96□□□□□ -1.46
SMCHD1-208ENST00000583344 ESPNLQ6ZVH7 1005 aa5.96□□□□□ -1.46
SMCHD1-208ENST00000583344 SYNE4Q8N205 404 aa5.96□□□□□ -1.46
SMCHD1-208ENST00000583344 MSL3Q8N5Y2 521 aaKnown RBP5.96□□□□□ -1.46
SMCHD1-208ENST00000583344 CDYL2Q8N8U2 506 aa5.96□□□□□ -1.46
SMCHD1-208ENST00000583344 OR5M3Q8NGP4 307 aa5.96□□□□□ -1.46
SMCHD1-208ENST00000583344 CPPED1Q9BRF8 314 aaPredicted RBP5.96□□□□□ -1.46
SMCHD1-208ENST00000583344 ST20-MTHFSA0A0A6YYL1 179 aa5.95□□□□□ -1.46
SMCHD1-208ENST00000583344 NRP1O14786 923 aa5.95□□□□□ -1.46
SMCHD1-208ENST00000583344 SCAF4O95104 1147 aaKnown RBP5.95□□□□□ -1.46
SMCHD1-208ENST00000583344 LRRC32Q14392 662 aa5.95□□□□□ -1.46
SMCHD1-208ENST00000583344 PCBP1Q15365 356 aaKnown RBP eCLIP5.95□□□□□ -1.46
SMCHD1-208ENST00000583344 TCEA2Q15560 299 aa5.95□□□□□ -1.46
SMCHD1-208ENST00000583344 LRRC55Q6ZSA7 311 aa5.95□□□□□ -1.46
SMCHD1-208ENST00000583344 LRRTM3Q86VH5 581 aa5.95□□□□□ -1.46
SMCHD1-208ENST00000583344 KIF18BQ86Y91 864 aa5.95□□□□□ -1.46
SMCHD1-208ENST00000583344 GPR150Q8NGU9 434 aa5.95□□□□□ -1.46
SMCHD1-208ENST00000583344 PROKR1Q8TCW9 393 aa5.95□□□□□ -1.46
SMCHD1-208ENST00000583344 RNPC3Q96LT9 517 aaKnown RBP5.95□□□□□ -1.46
SMCHD1-208ENST00000583344 CRAMP1Q96RY5 1269 aa5.95□□□□□ -1.46
SMCHD1-208ENST00000583344 ZNF768Q9H5H4 540 aaKnown RBP5.95□□□□□ -1.46
SMCHD1-208ENST00000583344 SEC24DO94855 1032 aaPredicted RBP5.94□□□□□ -1.46
SMCHD1-208ENST00000583344 ABHD16AO95870 558 aa5.94□□□□□ -1.46
SMCHD1-208ENST00000583344 PFKMP08237 780 aa5.94□□□□□ -1.46
SMCHD1-208ENST00000583344 BMP5P22003 454 aa5.94□□□□□ -1.46
SMCHD1-208ENST00000583344 PROZP22891 400 aa5.94□□□□□ -1.46
SMCHD1-208ENST00000583344 KPNA1P52294 538 aaPredicted RBP5.94□□□□□ -1.46
SMCHD1-208ENST00000583344 SEPT7Q16181 437 aaKnown RBP5.94□□□□□ -1.46
SMCHD1-208ENST00000583344 KCNV1Q6PIU1 500 aa5.94□□□□□ -1.46
SMCHD1-208ENST00000583344 PASD1Q8IV76 773 aa5.94□□□□□ -1.46
SMCHD1-208ENST00000583344 GPR101Q96P66 508 aaPredicted RBP5.94□□□□□ -1.46
SMCHD1-208ENST00000583344 LSM14BQ9BX40 385 aaKnown RBP5.94□□□□□ -1.46
SMCHD1-208ENST00000583344 USP36Q9P275 1121 aaKnown RBP5.94□□□□□ -1.46
SMCHD1-208ENST00000583344 FZD1Q9UP38 647 aa5.94□□□□□ -1.46
SMCHD1-208ENST00000583344 DNAJC6O75061 913 aa5.93□□□□□ -1.46
SMCHD1-208ENST00000583344 PPFIA2O75334 1257 aa5.93□□□□□ -1.46
SMCHD1-208ENST00000583344 GCP02774 474 aa5.93□□□□□ -1.46
SMCHD1-208ENST00000583344 ITGB1P05556 798 aa5.93□□□□□ -1.46
SMCHD1-208ENST00000583344 POU3F2P20265 443 aaPredicted RBP5.93□□□□□ -1.46
SMCHD1-208ENST00000583344 LY6G5CQ5SRR4 150 aa5.93□□□□□ -1.46
SMCHD1-208ENST00000583344 SYNPOQ8N3V7 929 aa5.93□□□□□ -1.46
SMCHD1-208ENST00000583344 SMC1BQ8NDV3 1235 aa5.93□□□□□ -1.46
SMCHD1-208ENST00000583344 OR52N2Q8NGI0 321 aa5.93□□□□□ -1.46
SMCHD1-208ENST00000583344 GAB3Q8WWW8 586 aa5.93□□□□□ -1.46
SMCHD1-208ENST00000583344 IL17RAQ96F46 866 aa5.93□□□□□ -1.46
SMCHD1-208ENST00000583344 EIF2B4Q9UI10 523 aaKnown RBP5.93□□□□□ -1.46
SMCHD1-208ENST00000583344 PRSS38A1L453 326 aa5.92□□□□□ -1.46
SMCHD1-208ENST00000583344 AHRRA9YTQ3 701 aa5.92□□□□□ -1.46
SMCHD1-208ENST00000583344 TRIM24O15164 1050 aa5.92□□□□□ -1.46
SMCHD1-208ENST00000583344 APOBEC3AP31941 199 aaPredicted RBP5.92□□□□□ -1.46
SMCHD1-208ENST00000583344 FAM189BP81408 668 aa5.92□□□□□ -1.46
SMCHD1-208ENST00000583344 KRTAP1-1Q07627 177 aa5.92□□□□□ -1.46
SMCHD1-208ENST00000583344 PPARAQ07869 468 aa5.92□□□□□ -1.46
SMCHD1-208ENST00000583344 MGAT5Q09328 741 aa5.92□□□□□ -1.46
SMCHD1-208ENST00000583344 MRPL49Q13405 166 aaKnown RBP5.92□□□□□ -1.46
SMCHD1-208ENST00000583344 VPS72Q15906 364 aa5.92□□□□□ -1.46
SMCHD1-208ENST00000583344 XYLT1Q86Y38 959 aa5.92□□□□□ -1.46
SMCHD1-208ENST00000583344 HOMER1Q86YM7 354 aa5.92□□□□□ -1.46
SMCHD1-208ENST00000583344 DHX37Q8IY37 1157 aaKnown RBP5.92□□□□□ -1.46
SMCHD1-208ENST00000583344 NINJ1Q92982 152 aa5.92□□□□□ -1.46
SMCHD1-208ENST00000583344 FAM193BQ96PV7 902 aaPredicted RBP5.92□□□□□ -1.46
SMCHD1-208ENST00000583344 KCNH6Q9H252 994 aa5.92□□□□□ -1.46
SMCHD1-208ENST00000583344 SPTLC3Q9NUV7 552 aa5.92□□□□□ -1.46
SMCHD1-208ENST00000583344 FANCLQ9NW38 375 aa5.92□□□□□ -1.46
SMCHD1-208ENST00000583344 WDR3Q9UNX4 943 aaKnown RBP eCLIP5.92□□□□□ -1.46
SMCHD1-208ENST00000583344 PPP2R3BQ9Y5P8 575 aa5.92□□□□□ -1.46
SMCHD1-208ENST00000583344 HS3ST4Q9Y661 456 aa5.92□□□□□ -1.46
SMCHD1-208ENST00000583344 GRID2IPA4D2P6 1211 aa5.91□□□□□ -1.46
SMCHD1-208ENST00000583344 LPXNO60711 386 aa5.91□□□□□ -1.46
SMCHD1-208ENST00000583344 RECQL4O94761 1208 aa5.91□□□□□ -1.46
SMCHD1-208ENST00000583344 GYPEP15421 78 aa5.91□□□□□ -1.46
SMCHD1-208ENST00000583344 DUSP2Q05923 314 aa5.91□□□□□ -1.46
SMCHD1-208ENST00000583344 PTPAQ15257 358 aa5.91□□□□□ -1.46
SMCHD1-208ENST00000583344 TIGD2Q4W5G0 525 aa5.91□□□□□ -1.46
SMCHD1-208ENST00000583344 PLEKHG4Q58EX7 1191 aa5.91□□□□□ -1.46
SMCHD1-208ENST00000583344 LMBR1LQ6UX01 489 aa5.91□□□□□ -1.46
SMCHD1-208ENST00000583344 C16orf86Q6ZW13 317 aa5.91□□□□□ -1.46
SMCHD1-208ENST00000583344 TAS1R1Q7RTX1 841 aa5.91□□□□□ -1.46
SMCHD1-208ENST00000583344 FAM83AQ86UY5 434 aa5.91□□□□□ -1.46
SMCHD1-208ENST00000583344 NIM1KQ8IY84 436 aa5.91□□□□□ -1.46
SMCHD1-208ENST00000583344 ZNF610Q8N9Z0 462 aa5.91□□□□□ -1.46
SMCHD1-208ENST00000583344 GLB1L3Q8NCI6 653 aaPredicted RBP5.91□□□□□ -1.46
SMCHD1-208ENST00000583344 PDCD2LQ9BRP1 358 aa5.91□□□□□ -1.46
SMCHD1-208ENST00000583344 TARS2Q9BW92 718 aaKnown RBP5.91□□□□□ -1.46
SMCHD1-208ENST00000583344 KRTAP9-8Q9BYQ0 159 aa5.91□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms