RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 CNNM3Q8NE01 707 aa26.44■■□□□ 1.82
SHMT1-206ENST00000579558 KIFAP3Q92845 792 aa26.44■■□□□ 1.82
SHMT1-206ENST00000579558 SNX21Q969T3 373 aa26.44■■□□□ 1.82
SHMT1-206ENST00000579558 EIF2AQ9BY44 585 aaKnown RBP26.44■■□□□ 1.82
SHMT1-206ENST00000579558 CSRNP2Q9H175 543 aa26.44■■□□□ 1.82
SHMT1-206ENST00000579558 C2orf40Q9H1Z8 148 aa26.44■■□□□ 1.82
SHMT1-206ENST00000579558 POLD4Q9HCU8 107 aa26.44■■□□□ 1.82
SHMT1-206ENST00000579558 CNTNAP2Q9UHC6 1331 aa26.43■■□□□ 1.82
SHMT1-206ENST00000579558 KCNA5P22460 613 aa26.43■■□□□ 1.82
SHMT1-206ENST00000579558 HYAL1Q12794 435 aa26.43■■□□□ 1.82
SHMT1-206ENST00000579558 SF3A1Q15459 793 aaKnown RBP26.43■■□□□ 1.82
SHMT1-206ENST00000579558 EP400NLQ6ZTU2 488 aa26.43■■□□□ 1.82
SHMT1-206ENST00000579558 KCNK18Q7Z418 384 aa26.43■■□□□ 1.82
SHMT1-206ENST00000579558 DEPTORQ8TB45 409 aa26.43■■□□□ 1.82
SHMT1-206ENST00000579558 URGCPQ8TCY9 931 aa26.43■■□□□ 1.82
SHMT1-206ENST00000579558 PPP2R3CQ969Q6 453 aa26.43■■□□□ 1.82
SHMT1-206ENST00000579558 PABPC5Q96DU9 382 aaKnown RBP26.43■■□□□ 1.82
SHMT1-206ENST00000579558 IFT74Q96LB3 600 aa26.43■■□□□ 1.82
SHMT1-206ENST00000579558 RSAD1Q9HA92 442 aa26.43■■□□□ 1.82
SHMT1-206ENST00000579558 TLR9Q9NR96 1032 aa26.43■■□□□ 1.82
SHMT1-206ENST00000579558 TBC1D13Q9NVG8 400 aa26.43■■□□□ 1.82
SHMT1-206ENST00000579558 PRMT7Q9NVM4 692 aaPredicted RBP26.43■■□□□ 1.82
SHMT1-206ENST00000579558 SPG21Q9NZD8 308 aa26.43■■□□□ 1.82
SHMT1-206ENST00000579558 IPPQ9Y573 584 aa26.43■■□□□ 1.82
SHMT1-206ENST00000579558 NCK2O43639 380 aa26.42■■□□□ 1.82
SHMT1-206ENST00000579558 BMP1P13497 986 aa26.42■■□□□ 1.82
SHMT1-206ENST00000579558 ITGA4P13612 1032 aa26.42■■□□□ 1.82
SHMT1-206ENST00000579558 PLCB3Q01970 1234 aa26.42■■□□□ 1.82
SHMT1-206ENST00000579558 RNASELQ05823 741 aaKnown RBP26.42■■□□□ 1.82
SHMT1-206ENST00000579558 RESTQ13127 1097 aa26.42■■□□□ 1.82
SHMT1-206ENST00000579558 HYIQ5T013 277 aa26.42■■□□□ 1.82
SHMT1-206ENST00000579558 PPP4R3CPQ6ZMV5 832 aa26.42■■□□□ 1.82
SHMT1-206ENST00000579558 SMG8Q8ND04 991 aaKnown RBP26.42■■□□□ 1.82
SHMT1-206ENST00000579558 MICAL1Q8TDZ2 1067 aa26.42■■□□□ 1.82
SHMT1-206ENST00000579558 ADAMTS19Q8TE59 1207 aa26.42■■□□□ 1.82
SHMT1-206ENST00000579558 MRPS27Q92552 414 aaKnown RBP26.42■■□□□ 1.82
SHMT1-206ENST00000579558 CDK5RAP3Q96JB5 506 aa26.42■■□□□ 1.82
SHMT1-206ENST00000579558 PRIMPOLQ96LW4 560 aa26.42■■□□□ 1.82
SHMT1-206ENST00000579558 PNMA5Q96PV4 448 aa26.42■■□□□ 1.82
SHMT1-206ENST00000579558 TRIM6Q9C030 488 aaPredicted RBP26.42■■□□□ 1.82
SHMT1-206ENST00000579558 NT5C3AQ9H0P0 336 aa26.42■■□□□ 1.82
SHMT1-206ENST00000579558 CLDND1Q9NY35 253 aa26.42■■□□□ 1.82
SHMT1-206ENST00000579558 PUF60Q9UHX1 559 aaKnown RBP26.42■■□□□ 1.82
SHMT1-206ENST00000579558 LZTS1Q9Y250 596 aa26.42■■□□□ 1.82
SHMT1-206ENST00000579558 XIRP2A4UGR9 3374 aa26.42■■□□□ 1.82
SHMT1-206ENST00000579558 TCF20Q9UGU0 1960 aaKnown RBP26.41■■□□□ 1.82
SHMT1-206ENST00000579558 ZC3H11AO75152 810 aaKnown RBP eCLIP26.41■■□□□ 1.82
SHMT1-206ENST00000579558 ALDH7A1P49419 539 aaKnown RBP26.41■■□□□ 1.82
SHMT1-206ENST00000579558 BCAR1P56945 870 aa26.41■■□□□ 1.82
SHMT1-206ENST00000579558 KRT17Q04695 432 aa26.41■■□□□ 1.82
SHMT1-206ENST00000579558 COL19A1Q14993 1142 aa26.41■■□□□ 1.82
SHMT1-206ENST00000579558 CABP7Q86V35 215 aa26.41■■□□□ 1.82
SHMT1-206ENST00000579558 HSCBQ8IWL3 235 aa26.41■■□□□ 1.82
SHMT1-206ENST00000579558 AK8Q96MA6 479 aa26.41■■□□□ 1.82
SHMT1-206ENST00000579558 PLIN2Q99541 437 aa26.41■■□□□ 1.82
SHMT1-206ENST00000579558 FZD8Q9H461 694 aa26.41■■□□□ 1.82
SHMT1-206ENST00000579558 IGFLR1Q9H665 355 aa26.41■■□□□ 1.82
SHMT1-206ENST00000579558 PCDHGC5Q9Y5F6 944 aa26.41■■□□□ 1.82
SHMT1-206ENST00000579558 MUC3AQ02505 3323 aa26.41■■□□□ 1.82
SHMT1-206ENST00000579558 LIG1P18858 919 aa26.4■■□□□ 1.82
SHMT1-206ENST00000579558 GTF2F1P35269 517 aaKnown RBP eCLIP26.4■■□□□ 1.82
SHMT1-206ENST00000579558 MAPK6Q16659 721 aa26.4■■□□□ 1.82
SHMT1-206ENST00000579558 FAM187BQ17R55 369 aa26.4■■□□□ 1.82
SHMT1-206ENST00000579558 LEXMQ3ZCV2 418 aa26.4■■□□□ 1.82
SHMT1-206ENST00000579558 SLC27A1Q6PCB7 646 aa26.4■■□□□ 1.82
SHMT1-206ENST00000579558 ADGRD2Q7Z7M1 963 aa26.4■■□□□ 1.82
SHMT1-206ENST00000579558 CDR2LQ86X02 465 aaPredicted RBP26.4■■□□□ 1.82
SHMT1-206ENST00000579558 SLC39A11Q8N1S5 342 aa26.4■■□□□ 1.82
SHMT1-206ENST00000579558 KIFC3Q9BVG8 833 aa26.4■■□□□ 1.82
SHMT1-206ENST00000579558 RUSC1Q9BVN2 902 aa26.4■■□□□ 1.82
SHMT1-206ENST00000579558 GBP3Q9H0R5 595 aa26.4■■□□□ 1.82
SHMT1-206ENST00000579558 NRDE2Q9H7Z3 1164 aa26.4■■□□□ 1.82
SHMT1-206ENST00000579558 UBN1Q9NPG3 1134 aa26.4■■□□□ 1.82
SHMT1-206ENST00000579558 HES2Q9Y543 173 aa26.4■■□□□ 1.82
SHMT1-206ENST00000579558 A0A1B0GUA9 196 aa26.39■■□□□ 1.82
SHMT1-206ENST00000579558 NT5C1B-RDH14C9J2C7 533 aa26.39■■□□□ 1.82
SHMT1-206ENST00000579558 NPTXRO95502 500 aa26.39■■□□□ 1.82
SHMT1-206ENST00000579558 SSBP05455 408 aaKnown RBP eCLIP26.39■■□□□ 1.82
SHMT1-206ENST00000579558 PRKCBP05771 671 aa26.39■■□□□ 1.82
SHMT1-206ENST00000579558 ERVFC1P60507 584 aa26.39■■□□□ 1.82
SHMT1-206ENST00000579558 TMEM132AQ24JP5 1023 aa26.39■■□□□ 1.82
SHMT1-206ENST00000579558 RINT1Q6NUQ1 792 aa26.39■■□□□ 1.82
SHMT1-206ENST00000579558 HACE1Q8IYU2 909 aa26.39■■□□□ 1.82
SHMT1-206ENST00000579558 KCTD17Q8N5Z5 321 aa26.39■■□□□ 1.82
SHMT1-206ENST00000579558 APOL6Q9BWW8 343 aa26.39■■□□□ 1.82
SHMT1-206ENST00000579558 MTMR6Q9Y217 621 aa26.39■■□□□ 1.82
SHMT1-206ENST00000579558 CLIC4Q9Y696 253 aa26.39■■□□□ 1.82
SHMT1-206ENST00000579558 H3BQ06 376 aaPredicted RBP26.38■■□□□ 1.81
SHMT1-206ENST00000579558 HIP1RO75146 1068 aa26.38■■□□□ 1.81
SHMT1-206ENST00000579558 UBA7P41226 1012 aa26.38■■□□□ 1.81
SHMT1-206ENST00000579558 PRPF4BQ13523 1007 aaKnown RBP26.38■■□□□ 1.81
SHMT1-206ENST00000579558 TMEM119Q4V9L6 283 aa26.38■■□□□ 1.81
SHMT1-206ENST00000579558 PDE12Q6L8Q7 609 aaKnown RBP26.38■■□□□ 1.81
SHMT1-206ENST00000579558 C1orf186Q6ZWK4 172 aa26.38■■□□□ 1.81
SHMT1-206ENST00000579558 UHRF1Q96T88 793 aaPredicted RBP26.38■■□□□ 1.81
SHMT1-206ENST00000579558 CCDC113Q9H0I3 377 aa26.38■■□□□ 1.81
SHMT1-206ENST00000579558 RNF39Q9H2S5 420 aa26.38■■□□□ 1.81
SHMT1-206ENST00000579558 NXF3Q9H4D5 531 aaKnown RBP26.38■■□□□ 1.81
SHMT1-206ENST00000579558 KANSL3Q9P2N6 904 aa26.38■■□□□ 1.81
SHMT1-206ENST00000579558 CARNS1A5YM72 827 aa26.37■■□□□ 1.81
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms