RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 PLA2G3Q9NZ20 509 aa7.23□□□□□ -1.25
NUP88-213ENST00000576862 TRHDEQ9UKU6 1024 aa7.23□□□□□ -1.25
NUP88-213ENST00000576862 WASHC2AQ641Q2 1341 aa7.23□□□□□ -1.25
NUP88-213ENST00000576862 WASHC2CQ9Y4E1 1318 aa7.23□□□□□ -1.25
NUP88-213ENST00000576862 UBE2QL1A1L167 161 aa7.22□□□□□ -1.25
NUP88-213ENST00000576862 ALG1L2C9J202 215 aa7.22□□□□□ -1.25
NUP88-213ENST00000576862 IARSP41252 1262 aaKnown RBP7.22□□□□□ -1.25
NUP88-213ENST00000576862 KRTAP10-2P60368 255 aa7.22□□□□□ -1.25
NUP88-213ENST00000576862 CCT2P78371 535 aaKnown RBP7.22□□□□□ -1.25
NUP88-213ENST00000576862 GRM7Q14831 915 aa7.22□□□□□ -1.25
NUP88-213ENST00000576862 UBE3CQ15386 1083 aa7.22□□□□□ -1.25
NUP88-213ENST00000576862 SPATS1Q496A3 300 aa7.22□□□□□ -1.25
NUP88-213ENST00000576862 SYDE2Q5VT97 1194 aa7.22□□□□□ -1.25
NUP88-213ENST00000576862 KRT40Q6A162 431 aa7.22□□□□□ -1.25
NUP88-213ENST00000576862 ABHD15Q6UXT9 468 aa7.22□□□□□ -1.25
NUP88-213ENST00000576862 TMEM176AQ96HP8 235 aa7.22□□□□□ -1.25
NUP88-213ENST00000576862 ENKD1Q9H0I2 346 aa7.22□□□□□ -1.25
NUP88-213ENST00000576862 IL23AQ9NPF7 189 aa7.22□□□□□ -1.25
NUP88-213ENST00000576862 NOP58Q9Y2X3 529 aaKnown RBP7.22□□□□□ -1.25
NUP88-213ENST00000576862 A0A1W2PRX2 142 aa7.21□□□□□ -1.26
NUP88-213ENST00000576862 TRIM75PA6NK02 468 aa7.21□□□□□ -1.26
NUP88-213ENST00000576862 GABRDO14764 452 aa7.21□□□□□ -1.26
NUP88-213ENST00000576862 LTA4HP09960 611 aaKnown RBP7.21□□□□□ -1.26
NUP88-213ENST00000576862 MSX2P35548 267 aaPredicted RBP7.21□□□□□ -1.26
NUP88-213ENST00000576862 BUD31P41223 144 aaPredicted RBP7.21□□□□□ -1.26
NUP88-213ENST00000576862 ADAM17P78536 824 aa7.21□□□□□ -1.26
NUP88-213ENST00000576862 ITKQ08881 620 aa7.21□□□□□ -1.26
NUP88-213ENST00000576862 ZNF585AQ6P3V2 769 aa7.21□□□□□ -1.26
NUP88-213ENST00000576862 POLNQ7Z5Q5 900 aa7.21□□□□□ -1.26
NUP88-213ENST00000576862 PRRT2Q7Z6L0 340 aaPredicted RBP7.21□□□□□ -1.26
NUP88-213ENST00000576862 CMTM4Q8IZR5 234 aa7.21□□□□□ -1.26
NUP88-213ENST00000576862 CHST13Q8NET6 341 aa7.21□□□□□ -1.26
NUP88-213ENST00000576862 IFT122Q9HBG6 1241 aa7.21□□□□□ -1.26
NUP88-213ENST00000576862 SCOCQ9UIL1 159 aa7.21□□□□□ -1.26
NUP88-213ENST00000576862 FZD9O00144 591 aa7.2□□□□□ -1.26
NUP88-213ENST00000576862 OSMP13725 252 aa7.2□□□□□ -1.26
NUP88-213ENST00000576862 MTHFD2P13995 350 aa7.2□□□□□ -1.26
NUP88-213ENST00000576862 CTSSP25774 331 aa7.2□□□□□ -1.26
NUP88-213ENST00000576862 MEF2AQ02078 507 aaPredicted RBP7.2□□□□□ -1.26
NUP88-213ENST00000576862 R3HDM1Q15032 1099 aaKnown RBP7.2□□□□□ -1.26
NUP88-213ENST00000576862 ADRM1Q16186 407 aa7.2□□□□□ -1.26
NUP88-213ENST00000576862 GLB1L3Q8NCI6 653 aaPredicted RBP7.2□□□□□ -1.26
NUP88-213ENST00000576862 C1orf162Q8NEQ5 155 aaPredicted RBP7.2□□□□□ -1.26
NUP88-213ENST00000576862 MTMR8Q96EF0 704 aa7.2□□□□□ -1.26
NUP88-213ENST00000576862 C1QTNF3Q9BXJ4 246 aa7.2□□□□□ -1.26
NUP88-213ENST00000576862 MT-CO1P00395 513 aa7.19□□□□□ -1.26
NUP88-213ENST00000576862 CFBP00751 764 aa7.19□□□□□ -1.26
NUP88-213ENST00000576862 ZNF20P17024 532 aa7.19□□□□□ -1.26
NUP88-213ENST00000576862 COMTP21964 271 aa7.19□□□□□ -1.26
NUP88-213ENST00000576862 CDSNQ15517 529 aa7.19□□□□□ -1.26
NUP88-213ENST00000576862 ABCB5Q2M3G0 1257 aa7.19□□□□□ -1.26
NUP88-213ENST00000576862 C19orf54Q5BKX5 351 aa7.19□□□□□ -1.26
NUP88-213ENST00000576862 MAMDC4Q6UXC1 1216 aa7.19□□□□□ -1.26
NUP88-213ENST00000576862 LILRA3Q8N6C8 439 aaPredicted RBP7.19□□□□□ -1.26
NUP88-213ENST00000576862 SNX33Q8WV41 574 aa7.19□□□□□ -1.26
NUP88-213ENST00000576862 ASPSCR1Q9BZE9 553 aa7.19□□□□□ -1.26
NUP88-213ENST00000576862 KLC2Q9H0B6 622 aa7.19□□□□□ -1.26
NUP88-213ENST00000576862 TLR9Q9NR96 1032 aa7.19□□□□□ -1.26
NUP88-213ENST00000576862 ZNF277Q9NRM2 450 aaPredicted RBP7.19□□□□□ -1.26
NUP88-213ENST00000576862 NCDNQ9UBB6 729 aa7.19□□□□□ -1.26
NUP88-213ENST00000576862 RCAN3Q9UKA8 241 aa7.19□□□□□ -1.26
NUP88-213ENST00000576862 SH3BP1Q9Y3L3 701 aa7.19□□□□□ -1.26
NUP88-213ENST00000576862 PCDHGA12O60330 932 aa7.18□□□□□ -1.26
NUP88-213ENST00000576862 PRAMEF4O60810 478 aa7.18□□□□□ -1.26
NUP88-213ENST00000576862 AGXTP21549 392 aa7.18□□□□□ -1.26
NUP88-213ENST00000576862 IBSPP21815 317 aaPredicted RBP7.18□□□□□ -1.26
NUP88-213ENST00000576862 SELENOPP49908 381 aa7.18□□□□□ -1.26
NUP88-213ENST00000576862 WNT3AP56704 352 aa7.18□□□□□ -1.26
NUP88-213ENST00000576862 ANO4Q32M45 955 aa7.18□□□□□ -1.26
NUP88-213ENST00000576862 FAM111BQ6SJ93 734 aa7.18□□□□□ -1.26
NUP88-213ENST00000576862 BTNL9Q6UXG8 535 aa7.18□□□□□ -1.26
NUP88-213ENST00000576862 DVL3Q92997 716 aaPredicted RBP7.18□□□□□ -1.26
NUP88-213ENST00000576862 FATE1Q969F0 183 aa7.18□□□□□ -1.26
NUP88-213ENST00000576862 SLC2A13Q96QE2 648 aa7.18□□□□□ -1.26
NUP88-213ENST00000576862 TCF25Q9BQ70 676 aa7.18□□□□□ -1.26
NUP88-213ENST00000576862 ACE2Q9BYF1 805 aaPredicted RBP7.18□□□□□ -1.26
NUP88-213ENST00000576862 DEF6Q9H4E7 631 aa7.18□□□□□ -1.26
NUP88-213ENST00000576862 HOMER2Q9NSB8 354 aa7.18□□□□□ -1.26
NUP88-213ENST00000576862 PCDHGA9Q9Y5G4 932 aaKnown RBP7.18□□□□□ -1.26
NUP88-213ENST00000576862 PCDHGA8Q9Y5G5 932 aa7.18□□□□□ -1.26
NUP88-213ENST00000576862 PCDHGA7Q9Y5G6 932 aa7.18□□□□□ -1.26
NUP88-213ENST00000576862 PCDHGA6Q9Y5G7 932 aa7.18□□□□□ -1.26
NUP88-213ENST00000576862 PCDHGA3Q9Y5H0 932 aa7.18□□□□□ -1.26
NUP88-213ENST00000576862 PCDHGA2Q9Y5H1 932 aa7.18□□□□□ -1.26
NUP88-213ENST00000576862 GPR45Q9Y5Y3 372 aa7.18□□□□□ -1.26
NUP88-213ENST00000576862 STC2O76061 302 aa7.17□□□□□ -1.26
NUP88-213ENST00000576862 ACO1P21399 889 aaKnown RBP7.17□□□□□ -1.26
NUP88-213ENST00000576862 CASRP41180 1078 aa7.17□□□□□ -1.26
NUP88-213ENST00000576862 PPP3CAQ08209 521 aa7.17□□□□□ -1.26
NUP88-213ENST00000576862 BRDTQ58F21 947 aaPredicted RBP7.17□□□□□ -1.26
NUP88-213ENST00000576862 SPTY2D1Q68D10 685 aaPredicted RBP7.17□□□□□ -1.26
NUP88-213ENST00000576862 PGM2L1Q6PCE3 622 aa7.17□□□□□ -1.26
NUP88-213ENST00000576862 ZNF808Q8N4W9 903 aaPredicted RBP7.17□□□□□ -1.26
NUP88-213ENST00000576862 EDAQ92838 391 aa7.17□□□□□ -1.26
NUP88-213ENST00000576862 FAXDC2Q96IV6 333 aa7.17□□□□□ -1.26
NUP88-213ENST00000576862 PAWRQ96IZ0 340 aaKnown RBP7.17□□□□□ -1.26
NUP88-213ENST00000576862 HECAQ9UBI9 543 aaPredicted RBP7.17□□□□□ -1.26
NUP88-213ENST00000576862 TCAF1Q9Y4C2 921 aa7.17□□□□□ -1.26
NUP88-213ENST00000576862 TNKSO95271 1327 aa7.17□□□□□ -1.26
NUP88-213ENST00000576862 hCG_2014768A0A024R1R8 64 aa7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms