RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 WDR5BQ86VZ2 330 aa18.54■□□□□ 0.56
VPS53-218ENST00000575207 APC2O95996 2303 aa18.54■□□□□ 0.56
VPS53-218ENST00000575207 TGM5O43548 720 aa18.53■□□□□ 0.56
VPS53-218ENST00000575207 HBP1O60381 514 aa18.53■□□□□ 0.56
VPS53-218ENST00000575207 ECI2O75521 394 aa18.53■□□□□ 0.56
VPS53-218ENST00000575207 ZMYND10O75800 440 aa18.53■□□□□ 0.56
VPS53-218ENST00000575207 CHRNB1P11230 501 aa18.53■□□□□ 0.56
VPS53-218ENST00000575207 ITGB5P18084 799 aa18.53■□□□□ 0.56
VPS53-218ENST00000575207 NOMO2Q5JPE7 1267 aa18.53■□□□□ 0.56
VPS53-218ENST00000575207 LILRA6Q6PI73 481 aa18.53■□□□□ 0.56
VPS53-218ENST00000575207 CACNA2D4Q7Z3S7 1137 aa18.53■□□□□ 0.56
VPS53-218ENST00000575207 GRASPQ7Z6J2 395 aaPredicted RBP18.53■□□□□ 0.56
VPS53-218ENST00000575207 STAG2Q8N3U4 1231 aa18.53■□□□□ 0.56
VPS53-218ENST00000575207 HNRNPABQ99729 332 aaKnown RBP18.53■□□□□ 0.56
VPS53-218ENST00000575207 HERC2P3Q9BVR0 1158 aa18.53■□□□□ 0.56
VPS53-218ENST00000575207 JPH1Q9HDC5 661 aaPredicted RBP18.53■□□□□ 0.56
VPS53-218ENST00000575207 DACT1Q9NYF0 836 aa18.53■□□□□ 0.56
VPS53-218ENST00000575207 TICRRQ7Z2Z1 1910 aa18.53■□□□□ 0.56
VPS53-218ENST00000575207 PCNX2A6NKB5 2137 aa18.52■□□□□ 0.56
VPS53-218ENST00000575207 FGAP02671 866 aa18.52■□□□□ 0.56
VPS53-218ENST00000575207 VTNP04004 478 aa18.52■□□□□ 0.56
VPS53-218ENST00000575207 EIF4BP23588 611 aaKnown RBP18.52■□□□□ 0.56
VPS53-218ENST00000575207 RNASELQ05823 741 aaKnown RBP18.52■□□□□ 0.56
VPS53-218ENST00000575207 CCDC178Q5BJE1 867 aa18.52■□□□□ 0.56
VPS53-218ENST00000575207 TCEAL6Q6IPX3 200 aa18.52■□□□□ 0.56
VPS53-218ENST00000575207 ZNF280BQ86YH2 543 aa18.52■□□□□ 0.56
VPS53-218ENST00000575207 RNF168Q8IYW5 571 aaPredicted RBP18.52■□□□□ 0.56
VPS53-218ENST00000575207 TCEAL3Q969E4 200 aa18.52■□□□□ 0.56
VPS53-218ENST00000575207 COL1A2P08123 1366 aa18.52■□□□□ 0.55
VPS53-218ENST00000575207 CACNA1EQ15878 2313 aa18.51■□□□□ 0.55
VPS53-218ENST00000575207 MAFGO15525 162 aa18.51■□□□□ 0.55
VPS53-218ENST00000575207 NTHL1P78549 312 aa18.51■□□□□ 0.55
VPS53-218ENST00000575207 GLB1LQ6UWU2 654 aa18.51■□□□□ 0.55
VPS53-218ENST00000575207 MFSD6Q6ZSS7 791 aa18.51■□□□□ 0.55
VPS53-218ENST00000575207 FAM3CQ92520 227 aa18.51■□□□□ 0.55
VPS53-218ENST00000575207 TRAIPQ9BWF2 469 aa18.51■□□□□ 0.55
VPS53-218ENST00000575207 LRRCC1Q9C099 1032 aa18.51■□□□□ 0.55
VPS53-218ENST00000575207 SLC9A2Q9UBY0 812 aa18.51■□□□□ 0.55
VPS53-218ENST00000575207 ZBTB42B2RXF5 422 aa18.5■□□□□ 0.55
VPS53-218ENST00000575207 KLRF2D3W0D1 207 aa18.5■□□□□ 0.55
VPS53-218ENST00000575207 OFD1O75665 1012 aa18.5■□□□□ 0.55
VPS53-218ENST00000575207 C1QL1O75973 258 aa18.5■□□□□ 0.55
VPS53-218ENST00000575207 EFEMP2O95967 443 aa18.5■□□□□ 0.55
VPS53-218ENST00000575207 PHKA2P46019 1235 aa18.5■□□□□ 0.55
VPS53-218ENST00000575207 GLUD2P49448 558 aa18.5■□□□□ 0.55
VPS53-218ENST00000575207 MTMR1Q13613 665 aa18.5■□□□□ 0.55
VPS53-218ENST00000575207 ZNF484Q5JVG2 852 aa18.5■□□□□ 0.55
VPS53-218ENST00000575207 TAS1R1Q7RTX1 841 aa18.5■□□□□ 0.55
VPS53-218ENST00000575207 KBTBD6Q86V97 674 aa18.5■□□□□ 0.55
VPS53-218ENST00000575207 PALB2Q86YC2 1186 aa18.5■□□□□ 0.55
VPS53-218ENST00000575207 GAB3Q8WWW8 586 aa18.5■□□□□ 0.55
VPS53-218ENST00000575207 ESR2Q92731 530 aa18.5■□□□□ 0.55
VPS53-218ENST00000575207 PLA2G2FQ9BZM2 168 aa18.5■□□□□ 0.55
VPS53-218ENST00000575207 GBP3Q9H0R5 595 aa18.5■□□□□ 0.55
VPS53-218ENST00000575207 PKD2L1Q9P0L9 805 aa18.5■□□□□ 0.55
VPS53-218ENST00000575207 SMARCA5O60264 1052 aaPredicted RBP18.49■□□□□ 0.55
VPS53-218ENST00000575207 C22orf31O95567 290 aa18.49■□□□□ 0.55
VPS53-218ENST00000575207 PRB1P04280 392 aa18.49■□□□□ 0.55
VPS53-218ENST00000575207 ALDH2P05091 517 aa18.49■□□□□ 0.55
VPS53-218ENST00000575207 ACTR2P61160 394 aa18.49■□□□□ 0.55
VPS53-218ENST00000575207 TSHZ3Q63HK5 1081 aa18.49■□□□□ 0.55
VPS53-218ENST00000575207 ITFG1Q8TB96 612 aa18.49■□□□□ 0.55
VPS53-218ENST00000575207 LPPQ93052 612 aa18.49■□□□□ 0.55
VPS53-218ENST00000575207 ZC3H10Q96K80 434 aaKnown RBP18.49■□□□□ 0.55
VPS53-218ENST00000575207 TMEM175Q9BSA9 504 aa18.49■□□□□ 0.55
VPS53-218ENST00000575207 SCUBE2Q9NQ36 999 aa18.49■□□□□ 0.55
VPS53-218ENST00000575207 INPP5FQ9Y2H2 1132 aa18.49■□□□□ 0.55
VPS53-218ENST00000575207 FAN1Q9Y2M0 1017 aa18.49■□□□□ 0.55
VPS53-218ENST00000575207 RAI2Q9Y5P3 530 aa18.49■□□□□ 0.55
VPS53-218ENST00000575207 UBIAD1Q9Y5Z9 338 aa18.49■□□□□ 0.55
VPS53-218ENST00000575207 IGKV6D-21A0A0A0MT36 114 aa18.48■□□□□ 0.55
VPS53-218ENST00000575207 TK2O00142 265 aa18.48■□□□□ 0.55
VPS53-218ENST00000575207 DDHD2O94830 711 aa18.48■□□□□ 0.55
VPS53-218ENST00000575207 ATG7O95352 703 aa18.48■□□□□ 0.55
VPS53-218ENST00000575207 SEC24BO95487 1268 aa18.48■□□□□ 0.55
VPS53-218ENST00000575207 NT5C2P49902 561 aa18.48■□□□□ 0.55
VPS53-218ENST00000575207 NLRP11P59045 1033 aaKnown RBP18.48■□□□□ 0.55
VPS53-218ENST00000575207 DSG1Q02413 1049 aa18.48■□□□□ 0.55
VPS53-218ENST00000575207 PTGDRQ13258 359 aa18.48■□□□□ 0.55
VPS53-218ENST00000575207 IQCA1Q86XH1 822 aa18.48■□□□□ 0.55
VPS53-218ENST00000575207 HOMER1Q86YM7 354 aa18.48■□□□□ 0.55
VPS53-218ENST00000575207 NPAS3Q8IXF0 933 aa18.48■□□□□ 0.55
VPS53-218ENST00000575207 ZNF710Q8N1W2 664 aa18.48■□□□□ 0.55
VPS53-218ENST00000575207 HNRNPLLQ8WVV9 542 aaKnown RBP18.48■□□□□ 0.55
VPS53-218ENST00000575207 GPATCH3Q96I76 525 aa18.48■□□□□ 0.55
VPS53-218ENST00000575207 LRIG1Q96JA1 1093 aa18.48■□□□□ 0.55
VPS53-218ENST00000575207 MBOAT7Q96N66 472 aa18.48■□□□□ 0.55
VPS53-218ENST00000575207 PIEZO2Q9H5I5 2752 aa18.47■□□□□ 0.55
VPS53-218ENST00000575207 NRP1O14786 923 aa18.47■□□□□ 0.55
VPS53-218ENST00000575207 RPP40O75818 363 aaKnown RBP18.47■□□□□ 0.55
VPS53-218ENST00000575207 HNRNPA1P09651 372 aaKnown RBP eCLIP18.47■□□□□ 0.55
VPS53-218ENST00000575207 FGD1P98174 961 aa18.47■□□□□ 0.55
VPS53-218ENST00000575207 SLC35G1Q2M3R5 365 aa18.47■□□□□ 0.55
VPS53-218ENST00000575207 PIGSQ96S52 555 aa18.47■□□□□ 0.55
VPS53-218ENST00000575207 MKNK1Q9BUB5 465 aa18.47■□□□□ 0.55
VPS53-218ENST00000575207 TRPV5Q9NQA5 729 aa18.47■□□□□ 0.55
VPS53-218ENST00000575207 CHST12Q9NRB3 414 aa18.47■□□□□ 0.55
VPS53-218ENST00000575207 ZMYM6O95789 1325 aa18.47■□□□□ 0.55
VPS53-218ENST00000575207 ASCC3Q8N3C0 2202 aaKnown RBP18.46■□□□□ 0.55
VPS53-218ENST00000575207 LNP1A1A4G5 178 aa18.46■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms