RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 EMC2Q15006 297 aa16.68■□□□□ 0.26
CLN3-236ENST00000568558 UBXN11Q5T124 520 aa16.68■□□□□ 0.26
CLN3-236ENST00000568558 RARS2Q5T160 578 aaKnown RBP16.68■□□□□ 0.26
CLN3-236ENST00000568558 NCAPH2Q6IBW4 605 aa16.68■□□□□ 0.26
CLN3-236ENST00000568558 MRPL10Q7Z7H8 261 aaKnown RBP16.68■□□□□ 0.26
CLN3-236ENST00000568558 ZBTB33Q86T24 672 aa16.68■□□□□ 0.26
CLN3-236ENST00000568558 ZNF280BQ86YH2 543 aa16.68■□□□□ 0.26
CLN3-236ENST00000568558 SLC22A17Q8WUG5 538 aa16.68■□□□□ 0.26
CLN3-236ENST00000568558 DYDC2Q96IM9 177 aa16.68■□□□□ 0.26
CLN3-236ENST00000568558 RIPOR3Q96MK2 946 aa16.68■□□□□ 0.26
CLN3-236ENST00000568558 PRRX2Q99811 253 aa16.68■□□□□ 0.26
CLN3-236ENST00000568558 VN1R3Q9BXE9 311 aa16.68■□□□□ 0.26
CLN3-236ENST00000568558 RSAD1Q9HA92 442 aa16.68■□□□□ 0.26
CLN3-236ENST00000568558 BMP2KQ9NSY1 1161 aaPredicted RBP16.68■□□□□ 0.26
CLN3-236ENST00000568558 RGL1Q9NZL6 768 aa16.68■□□□□ 0.26
CLN3-236ENST00000568558 CNTNAP2Q9UHC6 1331 aa16.68■□□□□ 0.26
CLN3-236ENST00000568558 MTCL1Q9Y4B5 1905 aaKnown RBP16.67■□□□□ 0.26
CLN3-236ENST00000568558 MARCH6O60337 910 aa16.67■□□□□ 0.26
CLN3-236ENST00000568558 DDHD2O94830 711 aa16.67■□□□□ 0.26
CLN3-236ENST00000568558 CTDNEP1O95476 244 aa16.67■□□□□ 0.26
CLN3-236ENST00000568558 SRGAP2CP0DJJ0 459 aa16.67■□□□□ 0.26
CLN3-236ENST00000568558 HOXA11P31270 313 aaPredicted RBP16.67■□□□□ 0.26
CLN3-236ENST00000568558 PTPN5P54829 565 aa16.67■□□□□ 0.26
CLN3-236ENST00000568558 VCPP55072 806 aaKnown RBP16.67■□□□□ 0.26
CLN3-236ENST00000568558 PTPN14Q15678 1187 aa16.67■□□□□ 0.26
CLN3-236ENST00000568558 KIAA1841Q6NSI8 718 aa16.67■□□□□ 0.26
CLN3-236ENST00000568558 OTUD6AQ7L8S5 288 aa16.67■□□□□ 0.26
CLN3-236ENST00000568558 FERMT3Q86UX7 667 aa16.67■□□□□ 0.26
CLN3-236ENST00000568558 SLFN12Q8IYM2 578 aa16.67■□□□□ 0.26
CLN3-236ENST00000568558 C12orf76Q8N812 135 aaPredicted RBP16.67■□□□□ 0.26
CLN3-236ENST00000568558 TMEM87AQ8NBN3 555 aa16.67■□□□□ 0.26
CLN3-236ENST00000568558 KREMEN2Q8NCW0 462 aa16.67■□□□□ 0.26
CLN3-236ENST00000568558 URGCPQ8TCY9 931 aa16.67■□□□□ 0.26
CLN3-236ENST00000568558 TCP11Q8WWU5 503 aa16.67■□□□□ 0.26
CLN3-236ENST00000568558 SORCS3Q9UPU3 1222 aa16.67■□□□□ 0.26
CLN3-236ENST00000568558 FAM205CA6NFA0 338 aa16.66■□□□□ 0.26
CLN3-236ENST00000568558 ASAP2O43150 1006 aa16.66■□□□□ 0.26
CLN3-236ENST00000568558 WEE2P0C1S8 567 aa16.66■□□□□ 0.26
CLN3-236ENST00000568558 AFF1P51825 1210 aaKnown RBP16.66■□□□□ 0.26
CLN3-236ENST00000568558 CYP4A11Q02928 519 aa16.66■□□□□ 0.26
CLN3-236ENST00000568558 TCF15Q12870 199 aa16.66■□□□□ 0.26
CLN3-236ENST00000568558 CTTNQ14247 550 aaKnown RBP16.66■□□□□ 0.26
CLN3-236ENST00000568558 XKR9Q5GH70 373 aa16.66■□□□□ 0.26
CLN3-236ENST00000568558 KANK3Q6NY19 840 aa16.66■□□□□ 0.26
CLN3-236ENST00000568558 RNF149Q8NC42 400 aa16.66■□□□□ 0.26
CLN3-236ENST00000568558 PHOX2BQ99453 314 aa16.66■□□□□ 0.26
CLN3-236ENST00000568558 TMEM175Q9BSA9 504 aa16.66■□□□□ 0.26
CLN3-236ENST00000568558 ZSWIM4Q9H7M6 989 aa16.66■□□□□ 0.26
CLN3-236ENST00000568558 ORC3Q9UBD5 711 aaPredicted RBP16.66■□□□□ 0.26
CLN3-236ENST00000568558 USP34Q70CQ2 3546 aa16.66■□□□□ 0.26
CLN3-236ENST00000568558 ZBTB39O15060 712 aa16.65■□□□□ 0.26
CLN3-236ENST00000568558 BAG4O95429 457 aaKnown RBP16.65■□□□□ 0.26
CLN3-236ENST00000568558 NCLP19338 710 aaKnown RBP16.65■□□□□ 0.26
CLN3-236ENST00000568558 KRT2P35908 639 aa16.65■□□□□ 0.26
CLN3-236ENST00000568558 NR5A1Q13285 461 aa16.65■□□□□ 0.26
CLN3-236ENST00000568558 MTMR3Q13615 1198 aa16.65■□□□□ 0.26
CLN3-236ENST00000568558 PPFIBP1Q86W92 1011 aa16.65■□□□□ 0.26
CLN3-236ENST00000568558 WASF1Q92558 559 aa16.65■□□□□ 0.26
CLN3-236ENST00000568558 TNFRSF25Q93038 417 aa16.65■□□□□ 0.26
CLN3-236ENST00000568558 FAM193BQ96PV7 902 aaPredicted RBP16.65■□□□□ 0.26
CLN3-236ENST00000568558 MTRQ99707 1265 aa16.65■□□□□ 0.26
CLN3-236ENST00000568558 XPNPEP1Q9NQW7 623 aa16.65■□□□□ 0.26
CLN3-236ENST00000568558 KANSL3Q9P2N6 904 aa16.65■□□□□ 0.26
CLN3-236ENST00000568558 STK39Q9UEW8 545 aa16.65■□□□□ 0.26
CLN3-236ENST00000568558 NRP1O14786 923 aa16.64■□□□□ 0.25
CLN3-236ENST00000568558 ERLIN2O94905 339 aa16.64■□□□□ 0.25
CLN3-236ENST00000568558 SLITRK3O94933 977 aa16.64■□□□□ 0.25
CLN3-236ENST00000568558 BRD1O95696 1058 aa16.64■□□□□ 0.25
CLN3-236ENST00000568558 PDGFBP01127 241 aaPredicted RBP16.64■□□□□ 0.25
CLN3-236ENST00000568558 POMCP01189 267 aa16.64■□□□□ 0.25
CLN3-236ENST00000568558 ALDH2P05091 517 aa16.64■□□□□ 0.25
CLN3-236ENST00000568558 FDPSP14324 419 aaKnown RBP16.64■□□□□ 0.25
CLN3-236ENST00000568558 AVPR2P30518 371 aa16.64■□□□□ 0.25
CLN3-236ENST00000568558 AK2P54819 239 aa16.64■□□□□ 0.25
CLN3-236ENST00000568558 ANAPC15P60006 121 aa16.64■□□□□ 0.25
CLN3-236ENST00000568558 ANKRD1Q15327 319 aa16.64■□□□□ 0.25
CLN3-236ENST00000568558 ATAT1Q5SQI0 421 aa16.64■□□□□ 0.25
CLN3-236ENST00000568558 UBALD2Q8IYN6 164 aa16.64■□□□□ 0.25
CLN3-236ENST00000568558 ZDHHC14Q8IZN3 488 aa16.64■□□□□ 0.25
CLN3-236ENST00000568558 TDRD5Q8NAT2 981 aaKnown RBP16.64■□□□□ 0.25
CLN3-236ENST00000568558 SMG8Q8ND04 991 aaKnown RBP16.64■□□□□ 0.25
CLN3-236ENST00000568558 CNNM3Q8NE01 707 aa16.64■□□□□ 0.25
CLN3-236ENST00000568558 FEZF2Q8TBJ5 459 aa16.64■□□□□ 0.25
CLN3-236ENST00000568558 KLHL5Q96PQ7 755 aa16.64■□□□□ 0.25
CLN3-236ENST00000568558 SFXN1Q9H9B4 322 aa16.64■□□□□ 0.25
CLN3-236ENST00000568558 DBR1Q9UK59 544 aaKnown RBP16.64■□□□□ 0.25
CLN3-236ENST00000568558 USTQ9Y2C2 406 aa16.64■□□□□ 0.25
CLN3-236ENST00000568558 FAN1Q9Y2M0 1017 aa16.64■□□□□ 0.25
CLN3-236ENST00000568558 CACNA1HO95180 2353 aa16.63■□□□□ 0.25
CLN3-236ENST00000568558 TSPAN1O60635 241 aa16.63■□□□□ 0.25
CLN3-236ENST00000568558 LILRB3O75022 631 aa16.63■□□□□ 0.25
CLN3-236ENST00000568558 SSBP05455 408 aaKnown RBP eCLIP16.63■□□□□ 0.25
CLN3-236ENST00000568558 AXLP30530 894 aa16.63■□□□□ 0.25
CLN3-236ENST00000568558 CLCN4P51793 760 aa16.63■□□□□ 0.25
CLN3-236ENST00000568558 PTENP60484 403 aa16.63■□□□□ 0.25
CLN3-236ENST00000568558 MXD4Q14582 209 aaPredicted RBP16.63■□□□□ 0.25
CLN3-236ENST00000568558 PCBP1Q15365 356 aaKnown RBP eCLIP16.63■□□□□ 0.25
CLN3-236ENST00000568558 TMC5Q6UXY8 1006 aa16.63■□□□□ 0.25
CLN3-236ENST00000568558 CABP7Q86V35 215 aa16.63■□□□□ 0.25
CLN3-236ENST00000568558 IFNLR1Q8IU57 520 aaPredicted RBP16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms