RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 TLL1O43897 1013 aa21.55■■□□□ 1.04
CLN3-225ENST00000566824 ERLIN2O94905 339 aa21.55■■□□□ 1.04
CLN3-225ENST00000566824 NMT1P30419 496 aaKnown RBP21.55■■□□□ 1.04
CLN3-225ENST00000566824 AFMP43652 599 aa21.55■■□□□ 1.04
CLN3-225ENST00000566824 NCKAP1LP55160 1127 aa21.55■■□□□ 1.04
CLN3-225ENST00000566824 HTRA4P83105 476 aaPredicted RBP21.55■■□□□ 1.04
CLN3-225ENST00000566824 FAM187BQ17R55 369 aa21.55■■□□□ 1.04
CLN3-225ENST00000566824 TWF2Q6IBS0 349 aaKnown RBP21.55■■□□□ 1.04
CLN3-225ENST00000566824 SFR1Q86XK3 245 aa21.55■■□□□ 1.04
CLN3-225ENST00000566824 ECHDC2Q86YB7 292 aa21.55■■□□□ 1.04
CLN3-225ENST00000566824 BLZF1Q9H2G9 400 aa21.55■■□□□ 1.04
CLN3-225ENST00000566824 TNMDQ9H2S6 317 aa21.55■■□□□ 1.04
CLN3-225ENST00000566824 CUEDC2Q9H467 287 aa21.55■■□□□ 1.04
CLN3-225ENST00000566824 C17orf75Q9HAS0 396 aa21.55■■□□□ 1.04
CLN3-225ENST00000566824 PARVGQ9HBI0 331 aa21.55■■□□□ 1.04
CLN3-225ENST00000566824 C1orf112Q9NSG2 853 aa21.55■■□□□ 1.04
CLN3-225ENST00000566824 PRMT7Q9NVM4 692 aaPredicted RBP21.55■■□□□ 1.04
CLN3-225ENST00000566824 KIAA1671Q9BY89 1806 aa21.55■■□□□ 1.04
CLN3-225ENST00000566824 TBCAO75347 108 aaKnown RBP21.55■■□□□ 1.04
CLN3-225ENST00000566824 CA3P07451 260 aa21.55■■□□□ 1.04
CLN3-225ENST00000566824 SLFN14P0C7P3 912 aa21.55■■□□□ 1.04
CLN3-225ENST00000566824 MAPTP10636 758 aaKnown RBP21.55■■□□□ 1.04
CLN3-225ENST00000566824 FGFR1P11362 822 aa21.55■■□□□ 1.04
CLN3-225ENST00000566824 EEF1DP3Q658K8 133 aa21.55■■□□□ 1.04
CLN3-225ENST00000566824 ZNF598Q86UK7 904 aaKnown RBP21.55■■□□□ 1.04
CLN3-225ENST00000566824 NPAS4Q8IUM7 802 aa21.55■■□□□ 1.04
CLN3-225ENST00000566824 LPPQ93052 612 aa21.55■■□□□ 1.04
CLN3-225ENST00000566824 HPS3Q969F9 1004 aa21.55■■□□□ 1.04
CLN3-225ENST00000566824 FGFBP2Q9BYJ0 223 aa21.55■■□□□ 1.04
CLN3-225ENST00000566824 TRIM9Q9C026 710 aa21.55■■□□□ 1.04
CLN3-225ENST00000566824 RC3H2Q9HBD1 1191 aaKnown RBP21.55■■□□□ 1.04
CLN3-225ENST00000566824 CNTNAP2Q9UHC6 1331 aa21.54■■□□□ 1.04
CLN3-225ENST00000566824 A0A0U1RQF3 1178 aa21.54■■□□□ 1.04
CLN3-225ENST00000566824 K7ERI5 159 aa21.54■■□□□ 1.04
CLN3-225ENST00000566824 ACKR2O00590 384 aa21.54■■□□□ 1.04
CLN3-225ENST00000566824 DGKIO75912 1065 aa21.54■■□□□ 1.04
CLN3-225ENST00000566824 IDEP14735 1019 aa21.54■■□□□ 1.04
CLN3-225ENST00000566824 SYKP43405 635 aa21.54■■□□□ 1.04
CLN3-225ENST00000566824 EFNA5P52803 228 aa21.54■■□□□ 1.04
CLN3-225ENST00000566824 CUL4BQ13620 913 aa21.54■■□□□ 1.04
CLN3-225ENST00000566824 MAPK6Q16659 721 aa21.54■■□□□ 1.04
CLN3-225ENST00000566824 RNF169Q8NCN4 708 aa21.54■■□□□ 1.04
CLN3-225ENST00000566824 PAGE5Q96GU1 130 aa21.54■■□□□ 1.04
CLN3-225ENST00000566824 RAD9AQ99638 391 aa21.54■■□□□ 1.04
CLN3-225ENST00000566824 C7orf25Q9BPX7 421 aa21.54■■□□□ 1.04
CLN3-225ENST00000566824 TTYH1Q9H313 450 aaPredicted RBP21.54■■□□□ 1.04
CLN3-225ENST00000566824 PDZD7Q9H5P4 517 aa21.54■■□□□ 1.04
CLN3-225ENST00000566824 FAM105AQ9NUU6 356 aa21.54■■□□□ 1.04
CLN3-225ENST00000566824 TBC1D7Q9P0N9 293 aa21.54■■□□□ 1.04
CLN3-225ENST00000566824 LARSQ9P2J5 1176 aaKnown RBP21.54■■□□□ 1.04
CLN3-225ENST00000566824 CHD7Q9P2D1 2997 aa21.53■■□□□ 1.04
CLN3-225ENST00000566824 PHLPP2Q6ZVD8 1323 aa21.53■■□□□ 1.04
CLN3-225ENST00000566824 A0A1B0GUA9 196 aa21.53■■□□□ 1.04
CLN3-225ENST00000566824 FRMD3A2A2Y4 597 aa21.53■■□□□ 1.04
CLN3-225ENST00000566824 TRAK2O60296 914 aa21.53■■□□□ 1.04
CLN3-225ENST00000566824 PRPF4BQ13523 1007 aaKnown RBP21.53■■□□□ 1.04
CLN3-225ENST00000566824 ZC2HC1CQ53FD0 456 aaPredicted RBP21.53■■□□□ 1.04
CLN3-225ENST00000566824 Q7L0L9 218 aa21.53■■□□□ 1.04
CLN3-225ENST00000566824 HAUS6Q7Z4H7 955 aa21.53■■□□□ 1.04
CLN3-225ENST00000566824 SMG8Q8ND04 991 aaKnown RBP21.53■■□□□ 1.04
CLN3-225ENST00000566824 ENGASEQ8NFI3 743 aa21.53■■□□□ 1.04
CLN3-225ENST00000566824 TIFAQ96CG3 184 aa21.53■■□□□ 1.04
CLN3-225ENST00000566824 ZNF689Q96CS4 500 aaPredicted RBP21.53■■□□□ 1.04
CLN3-225ENST00000566824 TRAIPQ9BWF2 469 aa21.53■■□□□ 1.04
CLN3-225ENST00000566824 RNF39Q9H2S5 420 aa21.53■■□□□ 1.04
CLN3-225ENST00000566824 IKZF4Q9H2S9 585 aa21.53■■□□□ 1.04
CLN3-225ENST00000566824 TMEM134Q9H6X4 195 aa21.53■■□□□ 1.04
CLN3-225ENST00000566824 TMEM161AQ9NX61 479 aa21.53■■□□□ 1.04
CLN3-225ENST00000566824 DACT1Q9NYF0 836 aa21.53■■□□□ 1.04
CLN3-225ENST00000566824 HCSTQ9UBK5 93 aa21.53■■□□□ 1.04
CLN3-225ENST00000566824 MSRAQ9UJ68 235 aa21.53■■□□□ 1.04
CLN3-225ENST00000566824 HES2Q9Y543 173 aa21.53■■□□□ 1.04
CLN3-225ENST00000566824 PCDHB7Q9Y5E2 793 aa21.53■■□□□ 1.04
CLN3-225ENST00000566824 PCDHB2Q9Y5E7 798 aa21.53■■□□□ 1.04
CLN3-225ENST00000566824 MYO9BQ13459 2157 aa21.53■■□□□ 1.04
CLN3-225ENST00000566824 NLRC5Q86WI3 1866 aa21.52■■□□□ 1.04
CLN3-225ENST00000566824 ZNF202O95125 648 aa21.52■■□□□ 1.03
CLN3-225ENST00000566824 NPTXRO95502 500 aa21.52■■□□□ 1.03
CLN3-225ENST00000566824 PRR29P0C7W0 189 aa21.52■■□□□ 1.03
CLN3-225ENST00000566824 AXLP30530 894 aa21.52■■□□□ 1.03
CLN3-225ENST00000566824 SNW1Q13573 536 aaKnown RBP21.52■■□□□ 1.03
CLN3-225ENST00000566824 PCBP1Q15365 356 aaKnown RBP eCLIP21.52■■□□□ 1.03
CLN3-225ENST00000566824 RAB30Q15771 203 aa21.52■■□□□ 1.03
CLN3-225ENST00000566824 PAN2Q504Q3 1202 aaKnown RBP21.52■■□□□ 1.03
CLN3-225ENST00000566824 CLLU1OSQ5K130 101 aa21.52■■□□□ 1.03
CLN3-225ENST00000566824 NOTUMQ6P988 496 aa21.52■■□□□ 1.03
CLN3-225ENST00000566824 FMR1NBQ8N0W7 255 aaPredicted RBP21.52■■□□□ 1.03
CLN3-225ENST00000566824 TMEM87AQ8NBN3 555 aa21.52■■□□□ 1.03
CLN3-225ENST00000566824 GLIS3Q8NEA6 775 aa21.52■■□□□ 1.03
CLN3-225ENST00000566824 SP7Q8TDD2 431 aaPredicted RBP21.52■■□□□ 1.03
CLN3-225ENST00000566824 PRIMPOLQ96LW4 560 aa21.52■■□□□ 1.03
CLN3-225ENST00000566824 YME1L1Q96TA2 773 aa21.52■■□□□ 1.03
CLN3-225ENST00000566824 TARS2Q9BW92 718 aaKnown RBP21.52■■□□□ 1.03
CLN3-225ENST00000566824 PANK4Q9NVE7 773 aa21.52■■□□□ 1.03
CLN3-225ENST00000566824 LRFN2Q9ULH4 789 aa21.52■■□□□ 1.03
CLN3-225ENST00000566824 K7ENM7 598 aa21.51■■□□□ 1.03
CLN3-225ENST00000566824 STAG3L1P0CL83 205 aa21.51■■□□□ 1.03
CLN3-225ENST00000566824 CASP5P51878 434 aa21.51■■□□□ 1.03
CLN3-225ENST00000566824 SMTNP53814 917 aa21.51■■□□□ 1.03
CLN3-225ENST00000566824 ASIC1P78348 528 aa21.51■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms