RNA–Protein interactions for RNA: ENST00000566612.5

CDH1-210, Transcript of cadherin 1, humanhuman

TSL 1 (best)

Gene CDH1, Length 4,138 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-210ENST00000566612 CNOT7Q9UIV1 285 aaKnown RBP12.45□□□□□ -0.42
CDH1-210ENST00000566612 ANAPC5Q9UJX4 755 aa12.45□□□□□ -0.42
CDH1-210ENST00000566612 ALG6Q9Y672 507 aa12.45□□□□□ -0.42
CDH1-210ENST00000566612 SFNP31947 248 aa12.44□□□□□ -0.42
CDH1-210ENST00000566612 SUPT20HL1Q3ZLR7 823 aa12.44□□□□□ -0.42
CDH1-210ENST00000566612 OTOP1Q7RTM1 612 aa12.44□□□□□ -0.42
CDH1-210ENST00000566612 CCDC13Q8IYE1 715 aa12.44□□□□□ -0.42
CDH1-210ENST00000566612 RNF25Q96BH1 459 aaPredicted RBP12.44□□□□□ -0.42
CDH1-210ENST00000566612 POP1Q99575 1024 aaKnown RBP12.44□□□□□ -0.42
CDH1-210ENST00000566612 TRIM6Q9C030 488 aaPredicted RBP12.44□□□□□ -0.42
CDH1-210ENST00000566612 SPEF2Q9C093 1822 aa12.44□□□□□ -0.42
CDH1-210ENST00000566612 RASGRF2O14827 1237 aa12.44□□□□□ -0.42
CDH1-210ENST00000566612 WDR46O15213 610 aaKnown RBP12.44□□□□□ -0.42
CDH1-210ENST00000566612 KCNJ1P48048 391 aa12.44□□□□□ -0.42
CDH1-210ENST00000566612 STXBP2Q15833 593 aa12.44□□□□□ -0.42
CDH1-210ENST00000566612 C2CD6Q53TS8 623 aa12.44□□□□□ -0.42
CDH1-210ENST00000566612 FAM160B1Q5W0V3 765 aa12.44□□□□□ -0.42
CDH1-210ENST00000566612 CROCCP2Q86T23 111 aa12.44□□□□□ -0.42
CDH1-210ENST00000566612 GRK7Q8WTQ7 553 aa12.44□□□□□ -0.42
CDH1-210ENST00000566612 ZKSCAN4Q969J2 545 aaPredicted RBP12.44□□□□□ -0.42
CDH1-210ENST00000566612 SLC35C1Q96A29 364 aa12.44□□□□□ -0.42
CDH1-210ENST00000566612 ARL8AQ96BM9 186 aa12.44□□□□□ -0.42
CDH1-210ENST00000566612 DCPSQ96C86 337 aaKnown RBP12.44□□□□□ -0.42
CDH1-210ENST00000566612 GLIS2Q9BZE0 524 aaPredicted RBP12.44□□□□□ -0.42
CDH1-210ENST00000566612 KCNMB3Q9NPA1 279 aa12.44□□□□□ -0.42
CDH1-210ENST00000566612 MYOZ2Q9NPC6 264 aa12.44□□□□□ -0.42
CDH1-210ENST00000566612 TISP43B9A030 160 aa12.44□□□□□ -0.42
CDH1-210ENST00000566612 EIF3DO15371 548 aaKnown RBP eCLIP12.44□□□□□ -0.42
CDH1-210ENST00000566612 CLDN3O15551 220 aa12.44□□□□□ -0.42
CDH1-210ENST00000566612 SOX10P56693 466 aa12.44□□□□□ -0.42
CDH1-210ENST00000566612 KCTD2Q14681 263 aa12.44□□□□□ -0.42
CDH1-210ENST00000566612 CCDC137Q6PK04 289 aaKnown RBP12.44□□□□□ -0.42
CDH1-210ENST00000566612 DEFB132Q7Z7B7 95 aa12.44□□□□□ -0.42
CDH1-210ENST00000566612 CBWD2Q8IUF1 395 aa12.44□□□□□ -0.42
CDH1-210ENST00000566612 RSAD2Q8WXG1 361 aa12.44□□□□□ -0.42
CDH1-210ENST00000566612 MLXIPLQ9NP71 852 aa12.44□□□□□ -0.42
CDH1-210ENST00000566612 SYNGAP1Q96PV0 1343 aa12.44□□□□□ -0.42
CDH1-210ENST00000566612 LRRD1A4D1F6 860 aa12.43□□□□□ -0.42
CDH1-210ENST00000566612 STAM2O75886 525 aa12.43□□□□□ -0.42
CDH1-210ENST00000566612 ATP2A2P16615 1042 aaKnown RBP12.43□□□□□ -0.42
CDH1-210ENST00000566612 HSPA6P17066 643 aa12.43□□□□□ -0.42
CDH1-210ENST00000566612 TKFCQ3LXA3 575 aa12.43□□□□□ -0.42
CDH1-210ENST00000566612 HP1BP3Q5SSJ5 553 aaPredicted RBP12.43□□□□□ -0.42
CDH1-210ENST00000566612 PPP1R21Q6ZMI0 780 aa12.43□□□□□ -0.42
CDH1-210ENST00000566612 CASKIN2Q8WXE0 1202 aa12.43□□□□□ -0.42
CDH1-210ENST00000566612 CPA5Q8WXQ8 436 aa12.43□□□□□ -0.42
CDH1-210ENST00000566612 DNAI2Q9GZS0 605 aa12.43□□□□□ -0.42
CDH1-210ENST00000566612 DEFB129Q9H1M3 183 aa12.43□□□□□ -0.42
CDH1-210ENST00000566612 FAM169AQ9Y6X4 670 aa12.43□□□□□ -0.42
CDH1-210ENST00000566612 PHRF1Q9P1Y6 1649 aaKnown RBP12.43□□□□□ -0.42
CDH1-210ENST00000566612 ABCC6O95255 1503 aa12.43□□□□□ -0.42
CDH1-210ENST00000566612 ZNF263O14978 683 aa12.43□□□□□ -0.42
CDH1-210ENST00000566612 CNGA1P29973 690 aa12.43□□□□□ -0.42
CDH1-210ENST00000566612 BAP1Q92560 729 aa12.43□□□□□ -0.42
CDH1-210ENST00000566612 ATP6V1G3Q96LB4 118 aa12.43□□□□□ -0.42
CDH1-210ENST00000566612 SGK1O00141 431 aa12.43□□□□□ -0.42
CDH1-210ENST00000566612 ARSHQ5FYA8 562 aa12.43□□□□□ -0.42
CDH1-210ENST00000566612 DNAJC24Q6P3W2 148 aa12.43□□□□□ -0.42
CDH1-210ENST00000566612 MKL1Q969V6 931 aa12.43□□□□□ -0.42
CDH1-210ENST00000566612 BTBD6Q96KE9 485 aa12.43□□□□□ -0.42
CDH1-210ENST00000566612 RUNDC3BQ96NL0 473 aa12.43□□□□□ -0.42
CDH1-210ENST00000566612 MKNK1Q9BUB5 465 aa12.43□□□□□ -0.42
CDH1-210ENST00000566612 JPH1Q9HDC5 661 aaPredicted RBP12.43□□□□□ -0.42
CDH1-210ENST00000566612 SLC9A2Q9UBY0 812 aa12.43□□□□□ -0.42
CDH1-210ENST00000566612 BAIAP2L1Q9UHR4 511 aa12.43□□□□□ -0.42
CDH1-210ENST00000566612 KRT1P04264 644 aa12.43□□□□□ -0.42
CDH1-210ENST00000566612 MYBL2P10244 700 aa12.43□□□□□ -0.42
CDH1-210ENST00000566612 IRAK1P51617 712 aa12.43□□□□□ -0.42
CDH1-210ENST00000566612 SETDB1Q15047 1291 aa12.43□□□□□ -0.42
CDH1-210ENST00000566612 HHATQ5VTY9 493 aa12.43□□□□□ -0.42
CDH1-210ENST00000566612 CTAGE3PQ8IX95 158 aa12.43□□□□□ -0.42
CDH1-210ENST00000566612 LPAR1Q92633 364 aa12.43□□□□□ -0.42
CDH1-210ENST00000566612 FAM118BQ9BPY3 351 aa12.43□□□□□ -0.42
CDH1-210ENST00000566612 MRPL47Q9HD33 250 aaKnown RBP12.43□□□□□ -0.42
CDH1-210ENST00000566612 TRAF3IP3Q9Y228 551 aa12.43□□□□□ -0.42
CDH1-210ENST00000566612 USP20Q9Y2K6 914 aa12.43□□□□□ -0.42
CDH1-210ENST00000566612 TRPM3Q9HCF6 1732 aaPredicted RBP12.42□□□□□ -0.42
CDH1-210ENST00000566612 ICAM1P05362 532 aa12.42□□□□□ -0.42
CDH1-210ENST00000566612 SCP2P22307 547 aa12.42□□□□□ -0.42
CDH1-210ENST00000566612 YARSP54577 528 aaKnown RBP12.42□□□□□ -0.42
CDH1-210ENST00000566612 CXCL9Q07325 125 aa12.42□□□□□ -0.42
CDH1-210ENST00000566612 CCDC38Q502W7 563 aa12.42□□□□□ -0.42
CDH1-210ENST00000566612 VSIG1Q86XK7 387 aa12.42□□□□□ -0.42
CDH1-210ENST00000566612 SLC20A1Q8WUM9 679 aa12.42□□□□□ -0.42
CDH1-210ENST00000566612 SLITRK6Q9H5Y7 841 aa12.42□□□□□ -0.42
CDH1-210ENST00000566612 HOXC10Q9NYD6 342 aa12.42□□□□□ -0.42
CDH1-210ENST00000566612 AIPL1Q9NZN9 384 aa12.42□□□□□ -0.42
CDH1-210ENST00000566612 AGO2Q9UKV8 859 aaKnown RBP12.42□□□□□ -0.42
CDH1-210ENST00000566612 TTC7AQ9ULT0 858 aaPredicted RBP12.42□□□□□ -0.42
CDH1-210ENST00000566612 AKT3Q9Y243 479 aa12.42□□□□□ -0.42
CDH1-210ENST00000566612 BAZ2AQ9UIF9 1905 aaKnown RBP12.42□□□□□ -0.42
CDH1-210ENST00000566612 ALS2Q96Q42 1657 aa12.42□□□□□ -0.42
CDH1-210ENST00000566612 SNHG28P0DPA3 235 aa12.42□□□□□ -0.42
CDH1-210ENST00000566612 ITGA4P13612 1032 aa12.42□□□□□ -0.42
CDH1-210ENST00000566612 PRLRP16471 622 aa12.42□□□□□ -0.42
CDH1-210ENST00000566612 COMTP21964 271 aa12.42□□□□□ -0.42
CDH1-210ENST00000566612 AMPD2Q01433 879 aa12.42□□□□□ -0.42
CDH1-210ENST00000566612 MKRN3Q13064 507 aaKnown RBP12.42□□□□□ -0.42
CDH1-210ENST00000566612 ZNF302Q9NR11 478 aa12.42□□□□□ -0.42
CDH1-210ENST00000566612 RBAKQ9NYW8 714 aaPredicted RBP12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms