RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 GSTCDQ8NEC7 633 aa10.9□□□□□ -0.66
CLN3-220ENST00000566040 GDPD5Q8WTR4 605 aa10.9□□□□□ -0.66
CLN3-220ENST00000566040 LARP4BQ92615 738 aaKnown RBP10.9□□□□□ -0.66
CLN3-220ENST00000566040 ZNF396Q96N95 335 aaPredicted RBP10.9□□□□□ -0.66
CLN3-220ENST00000566040 IKZF4Q9H2S9 585 aa10.9□□□□□ -0.66
CLN3-220ENST00000566040 PDZD7Q9H5P4 517 aa10.9□□□□□ -0.66
CLN3-220ENST00000566040 PTPRHQ9HD43 1115 aa10.9□□□□□ -0.66
CLN3-220ENST00000566040 CHST12Q9NRB3 414 aa10.9□□□□□ -0.66
CLN3-220ENST00000566040 C1orf112Q9NSG2 853 aa10.9□□□□□ -0.66
CLN3-220ENST00000566040 FAM105AQ9NUU6 356 aa10.9□□□□□ -0.66
CLN3-220ENST00000566040 MSRAQ9UJ68 235 aa10.9□□□□□ -0.66
CLN3-220ENST00000566040 INSL6Q9Y581 213 aa10.9□□□□□ -0.66
CLN3-220ENST00000566040 FAM237AA0A1B0GTK4 181 aa10.89□□□□□ -0.67
CLN3-220ENST00000566040 A0A1B0GUA9 196 aa10.89□□□□□ -0.67
CLN3-220ENST00000566040 FRMD3A2A2Y4 597 aa10.89□□□□□ -0.67
CLN3-220ENST00000566040 DENND3A2RUS2 1198 aa10.89□□□□□ -0.67
CLN3-220ENST00000566040 INPPL1O15357 1258 aa10.89□□□□□ -0.67
CLN3-220ENST00000566040 PPP1R37O75864 691 aa10.89□□□□□ -0.67
CLN3-220ENST00000566040 PDIA4P13667 645 aaKnown RBP10.89□□□□□ -0.67
CLN3-220ENST00000566040 PROZP22891 400 aa10.89□□□□□ -0.67
CLN3-220ENST00000566040 DNAJB1P25685 340 aa10.89□□□□□ -0.67
CLN3-220ENST00000566040 NCKAP1LP55160 1127 aa10.89□□□□□ -0.67
CLN3-220ENST00000566040 PEX3P56589 373 aa10.89□□□□□ -0.67
CLN3-220ENST00000566040 PAN2Q504Q3 1202 aaKnown RBP10.89□□□□□ -0.67
CLN3-220ENST00000566040 ATL3Q6DD88 541 aa10.89□□□□□ -0.67
CLN3-220ENST00000566040 SLC39A4Q6P5W5 647 aa10.89□□□□□ -0.67
CLN3-220ENST00000566040 CMTR2Q8IYT2 770 aaKnown RBP10.89□□□□□ -0.67
CLN3-220ENST00000566040 KIFAP3Q92845 792 aa10.89□□□□□ -0.67
CLN3-220ENST00000566040 SCLT1Q96NL6 688 aa10.89□□□□□ -0.67
CLN3-220ENST00000566040 NTPCRQ9BSD7 190 aaKnown RBP10.89□□□□□ -0.67
CLN3-220ENST00000566040 STRA6Q9BX79 667 aa10.89□□□□□ -0.67
CLN3-220ENST00000566040 GOLPH3LQ9H4A5 285 aa10.89□□□□□ -0.67
CLN3-220ENST00000566040 NXF3Q9H4D5 531 aaKnown RBP10.89□□□□□ -0.67
CLN3-220ENST00000566040 SLC28A3Q9HAS3 691 aa10.89□□□□□ -0.67
CLN3-220ENST00000566040 GDPD2Q9HCC8 539 aa10.89□□□□□ -0.67
CLN3-220ENST00000566040 STK17AQ9UEE5 414 aa10.89□□□□□ -0.67
CLN3-220ENST00000566040 HPSEQ9Y251 543 aa10.89□□□□□ -0.67
CLN3-220ENST00000566040 HES2Q9Y543 173 aa10.89□□□□□ -0.67
CLN3-220ENST00000566040 A0A0C4DFX4 3053 aa10.88□□□□□ -0.67
CLN3-220ENST00000566040 PHLPP2Q6ZVD8 1323 aa10.88□□□□□ -0.67
CLN3-220ENST00000566040 C5orf67F2Z3F1 127 aa10.88□□□□□ -0.67
CLN3-220ENST00000566040 INO80B-WBP1J3KQ70 363 aa10.88□□□□□ -0.67
CLN3-220ENST00000566040 FAM189A1O60320 539 aa10.88□□□□□ -0.67
CLN3-220ENST00000566040 PRKCBP05771 671 aa10.88□□□□□ -0.67
CLN3-220ENST00000566040 MAPTP10636 758 aaKnown RBP10.88□□□□□ -0.67
CLN3-220ENST00000566040 PLS3P13797 630 aa10.88□□□□□ -0.67
CLN3-220ENST00000566040 POU3F3P20264 500 aaPredicted RBP10.88□□□□□ -0.67
CLN3-220ENST00000566040 CASP1P29466 404 aa10.88□□□□□ -0.67
CLN3-220ENST00000566040 TFDP1Q14186 410 aa10.88□□□□□ -0.67
CLN3-220ENST00000566040 BECN1Q14457 450 aa10.88□□□□□ -0.67
CLN3-220ENST00000566040 LONRF3Q496Y0 759 aa10.88□□□□□ -0.67
CLN3-220ENST00000566040 EPC2Q52LR7 807 aa10.88□□□□□ -0.67
CLN3-220ENST00000566040 FAM43BQ6ZT52 329 aaPredicted RBP10.88□□□□□ -0.67
CLN3-220ENST00000566040 TMEM173Q86WV6 379 aaPredicted RBP10.88□□□□□ -0.67
CLN3-220ENST00000566040 PDILTQ8N807 584 aa10.88□□□□□ -0.67
CLN3-220ENST00000566040 GLIS3Q8NEA6 775 aa10.88□□□□□ -0.67
CLN3-220ENST00000566040 HELQQ8TDG4 1101 aa10.88□□□□□ -0.67
CLN3-220ENST00000566040 BCL7CQ8WUZ0 217 aaPredicted RBP10.88□□□□□ -0.67
CLN3-220ENST00000566040 SPIRE2Q8WWL2 714 aa10.88□□□□□ -0.67
CLN3-220ENST00000566040 STAMQ92783 540 aa10.88□□□□□ -0.67
CLN3-220ENST00000566040 CALML4Q96GE6 196 aa10.88□□□□□ -0.67
CLN3-220ENST00000566040 CCDC43Q96MW1 224 aaKnown RBP10.88□□□□□ -0.67
CLN3-220ENST00000566040 YME1L1Q96TA2 773 aa10.88□□□□□ -0.67
CLN3-220ENST00000566040 PANK2Q9BZ23 570 aa10.88□□□□□ -0.67
CLN3-220ENST00000566040 INO80BQ9C086 356 aaPredicted RBP10.88□□□□□ -0.67
CLN3-220ENST00000566040 KBTBD4Q9NVX7 518 aa10.88□□□□□ -0.67
CLN3-220ENST00000566040 MIOSQ9NXC5 875 aa10.88□□□□□ -0.67
CLN3-220ENST00000566040 MTUS1Q9ULD2 1270 aa10.88□□□□□ -0.67
CLN3-220ENST00000566040 PLAGL2Q9UPG8 496 aa10.88□□□□□ -0.67
CLN3-220ENST00000566040 IPPQ9Y573 584 aa10.88□□□□□ -0.67
CLN3-220ENST00000566040 PCDHB2Q9Y5E7 798 aa10.88□□□□□ -0.67
CLN3-220ENST00000566040 ACKR2O00590 384 aa10.87□□□□□ -0.67
CLN3-220ENST00000566040 SLC16A4O15374 487 aa10.87□□□□□ -0.67
CLN3-220ENST00000566040 ACTN4O43707 911 aaKnown RBP10.87□□□□□ -0.67
CLN3-220ENST00000566040 OFD1O75665 1012 aa10.87□□□□□ -0.67
CLN3-220ENST00000566040 SSBP05455 408 aaKnown RBP eCLIP10.87□□□□□ -0.67
CLN3-220ENST00000566040 NCLP19338 710 aaKnown RBP10.87□□□□□ -0.67
CLN3-220ENST00000566040 PBX3P40426 434 aa10.87□□□□□ -0.67
CLN3-220ENST00000566040 CASP5P51878 434 aa10.87□□□□□ -0.67
CLN3-220ENST00000566040 EHHADHQ08426 723 aa10.87□□□□□ -0.67
CLN3-220ENST00000566040 DHX8Q14562 1220 aaKnown RBP10.87□□□□□ -0.67
CLN3-220ENST00000566040 PCBP1Q15365 356 aaKnown RBP eCLIP10.87□□□□□ -0.67
CLN3-220ENST00000566040 NAB2Q15742 525 aa10.87□□□□□ -0.67
CLN3-220ENST00000566040 TWF2Q6IBS0 349 aaKnown RBP10.87□□□□□ -0.67
CLN3-220ENST00000566040 TMEM192Q8IY95 271 aa10.87□□□□□ -0.67
CLN3-220ENST00000566040 TMEM130Q8N3G9 435 aa10.87□□□□□ -0.67
CLN3-220ENST00000566040 CEP120Q8N960 986 aa10.87□□□□□ -0.67
CLN3-220ENST00000566040 KCNG4Q8TDN1 519 aa10.87□□□□□ -0.67
CLN3-220ENST00000566040 ARNTL2Q8WYA1 636 aa10.87□□□□□ -0.67
CLN3-220ENST00000566040 PRIMPOLQ96LW4 560 aa10.87□□□□□ -0.67
CLN3-220ENST00000566040 TGS1Q96RS0 853 aaKnown RBP10.87□□□□□ -0.67
CLN3-220ENST00000566040 ACO2Q99798 780 aaKnown RBP10.87□□□□□ -0.67
CLN3-220ENST00000566040 ZBED2Q9BTP6 218 aa10.87□□□□□ -0.67
CLN3-220ENST00000566040 TIPINQ9BVW5 301 aa10.87□□□□□ -0.67
CLN3-220ENST00000566040 VN1R3Q9BXE9 311 aa10.87□□□□□ -0.67
CLN3-220ENST00000566040 TMEM117Q9H0C3 514 aa10.87□□□□□ -0.67
CLN3-220ENST00000566040 PRMT7Q9NVM4 692 aaPredicted RBP10.87□□□□□ -0.67
CLN3-220ENST00000566040 KCND2Q9NZV8 630 aa10.87□□□□□ -0.67
CLN3-220ENST00000566040 ODF2LQ9ULJ1 636 aa10.87□□□□□ -0.67
CLN3-220ENST00000566040 STXBP5LQ9Y2K9 1186 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms