RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 PTK7Q13308 1070 aa14.05□□□□□ -0.16
CLK3-214ENST00000564096 MYBPC2Q14324 1141 aa14.05□□□□□ -0.16
CLK3-214ENST00000564096 NCAPHQ15003 741 aa14.05□□□□□ -0.16
CLK3-214ENST00000564096 ANKRD40Q6AI12 368 aa14.05□□□□□ -0.16
CLK3-214ENST00000564096 ARMCX5Q6P1M9 558 aa14.05□□□□□ -0.16
CLK3-214ENST00000564096 APBB1IPQ7Z5R6 666 aaPredicted RBP14.05□□□□□ -0.16
CLK3-214ENST00000564096 RPAINQ86UA6 219 aa14.05□□□□□ -0.16
CLK3-214ENST00000564096 KSR1Q8IVT5 923 aa14.05□□□□□ -0.16
CLK3-214ENST00000564096 DNAJB3Q8WWF6 145 aa14.05□□□□□ -0.16
CLK3-214ENST00000564096 CCDC113Q9H0I3 377 aa14.05□□□□□ -0.16
CLK3-214ENST00000564096 MYH11P35749 1972 aa14.04□□□□□ -0.16
CLK3-214ENST00000564096 A0A087WZ62 844 aa14.04□□□□□ -0.16
CLK3-214ENST00000564096 TLR3O15455 904 aaKnown RBP14.04□□□□□ -0.16
CLK3-214ENST00000564096 PIGRP01833 764 aa14.04□□□□□ -0.16
CLK3-214ENST00000564096 EPB41P11171 864 aaKnown RBP14.04□□□□□ -0.16
CLK3-214ENST00000564096 MRPS6P82932 125 aaKnown RBP14.04□□□□□ -0.16
CLK3-214ENST00000564096 ZNF200P98182 395 aaPredicted RBP14.04□□□□□ -0.16
CLK3-214ENST00000564096 MBTD1Q05BQ5 628 aa14.04□□□□□ -0.16
CLK3-214ENST00000564096 NCBP1Q09161 790 aaKnown RBP14.04□□□□□ -0.16
CLK3-214ENST00000564096 KCNA1Q09470 495 aa14.04□□□□□ -0.16
CLK3-214ENST00000564096 PRPF4BQ13523 1007 aaKnown RBP14.04□□□□□ -0.16
CLK3-214ENST00000564096 KIZQ2M2Z5 673 aa14.04□□□□□ -0.16
CLK3-214ENST00000564096 CCDC40Q4G0X9 1142 aa14.04□□□□□ -0.16
CLK3-214ENST00000564096 SLFN12LQ6IEE8 588 aa14.04□□□□□ -0.16
CLK3-214ENST00000564096 ZPBP2Q6X784 338 aa14.04□□□□□ -0.16
CLK3-214ENST00000564096 LRRC55Q6ZSA7 311 aa14.04□□□□□ -0.16
CLK3-214ENST00000564096 C12orf56Q8IXR9 622 aa14.04□□□□□ -0.16
CLK3-214ENST00000564096 SLC43A3Q8NBI5 491 aa14.04□□□□□ -0.16
CLK3-214ENST00000564096 PPP1R13LQ8WUF5 828 aa14.04□□□□□ -0.16
CLK3-214ENST00000564096 CTAGE1Q96RT6 745 aa14.04□□□□□ -0.16
CLK3-214ENST00000564096 PPP1R16BQ96T49 567 aa14.04□□□□□ -0.16
CLK3-214ENST00000564096 FDXACB1Q9BRP7 624 aaPredicted RBP14.04□□□□□ -0.16
CLK3-214ENST00000564096 FANCLQ9NW38 375 aa14.04□□□□□ -0.16
CLK3-214ENST00000564096 GINS2Q9Y248 185 aa14.04□□□□□ -0.16
CLK3-214ENST00000564096 FRMD4BQ9Y2L6 1034 aa14.04□□□□□ -0.16
CLK3-214ENST00000564096 TRPV2Q9Y5S1 764 aa14.04□□□□□ -0.16
CLK3-214ENST00000564096 CNTNAP2Q9UHC6 1331 aa14.04□□□□□ -0.16
CLK3-214ENST00000564096 HTTP42858 3142 aa14.04□□□□□ -0.16
CLK3-214ENST00000564096 PCNTO95613 3336 aa14.03□□□□□ -0.16
CLK3-214ENST00000564096 KCNJ18B7U540 433 aa14.03□□□□□ -0.16
CLK3-214ENST00000564096 ACKR2O00590 384 aa14.03□□□□□ -0.16
CLK3-214ENST00000564096 TGFB1I1O43294 461 aa14.03□□□□□ -0.16
CLK3-214ENST00000564096 CBFA2T2O43439 604 aa14.03□□□□□ -0.16
CLK3-214ENST00000564096 SERPINC1P01008 464 aa14.03□□□□□ -0.16
CLK3-214ENST00000564096 ZNF18P17022 549 aa14.03□□□□□ -0.16
CLK3-214ENST00000564096 HOXD13P35453 343 aa14.03□□□□□ -0.16
CLK3-214ENST00000564096 MATR3P43243 847 aaKnown RBP eCLIP14.03□□□□□ -0.16
CLK3-214ENST00000564096 CRYBB1P53674 252 aaPredicted RBP14.03□□□□□ -0.16
CLK3-214ENST00000564096 PLCB2Q00722 1185 aa14.03□□□□□ -0.16
CLK3-214ENST00000564096 ADAM9Q13443 819 aa14.03□□□□□ -0.16
CLK3-214ENST00000564096 KCNJ12Q14500 433 aa14.03□□□□□ -0.16
CLK3-214ENST00000564096 HIC1Q14526 733 aa14.03□□□□□ -0.16
CLK3-214ENST00000564096 FAM187BQ17R55 369 aa14.03□□□□□ -0.16
CLK3-214ENST00000564096 CDKAL1Q5VV42 579 aa14.03□□□□□ -0.16
CLK3-214ENST00000564096 SLC9A9Q8IVB4 645 aa14.03□□□□□ -0.16
CLK3-214ENST00000564096 ZC3H3Q8IXZ2 948 aaKnown RBP14.03□□□□□ -0.16
CLK3-214ENST00000564096 TMEM174Q8WUU8 243 aa14.03□□□□□ -0.16
CLK3-214ENST00000564096 CNOT6LQ96LI5 555 aaKnown RBP14.03□□□□□ -0.16
CLK3-214ENST00000564096 OSMRQ99650 979 aa14.03□□□□□ -0.16
CLK3-214ENST00000564096 DUSP9Q99956 384 aaKnown RBP14.03□□□□□ -0.16
CLK3-214ENST00000564096 MKNK1Q9BUB5 465 aa14.03□□□□□ -0.16
CLK3-214ENST00000564096 SRRTQ9BXP5 876 aaKnown RBP14.03□□□□□ -0.16
CLK3-214ENST00000564096 MCOLN1Q9GZU1 580 aa14.03□□□□□ -0.16
CLK3-214ENST00000564096 IFT122Q9HBG6 1241 aa14.03□□□□□ -0.16
CLK3-214ENST00000564096 GRIN2DO15399 1336 aa14.03□□□□□ -0.16
CLK3-214ENST00000564096 SIP14410 1827 aa14.03□□□□□ -0.16
CLK3-214ENST00000564096 EXOC3O60645 756 aa14.02□□□□□ -0.17
CLK3-214ENST00000564096 GPR32O75388 356 aa14.02□□□□□ -0.17
CLK3-214ENST00000564096 TOM1L1O75674 476 aa14.02□□□□□ -0.17
CLK3-214ENST00000564096 DARSP14868 501 aaKnown RBP14.02□□□□□ -0.17
CLK3-214ENST00000564096 GARTP22102 1010 aa14.02□□□□□ -0.17
CLK3-214ENST00000564096 THPOP40225 353 aa14.02□□□□□ -0.17
CLK3-214ENST00000564096 CYP2J2P51589 502 aa14.02□□□□□ -0.17
CLK3-214ENST00000564096 TMEM62Q0P6H9 643 aa14.02□□□□□ -0.17
CLK3-214ENST00000564096 FILIP1LQ4L180 1135 aa14.02□□□□□ -0.17
CLK3-214ENST00000564096 SARM1Q6SZW1 724 aa14.02□□□□□ -0.17
CLK3-214ENST00000564096 TAS1R3Q7RTX0 852 aa14.02□□□□□ -0.17
CLK3-214ENST00000564096 CATSPER4Q7RTX7 472 aa14.02□□□□□ -0.17
CLK3-214ENST00000564096 USP37Q86T82 979 aa14.02□□□□□ -0.17
CLK3-214ENST00000564096 CAGE1Q8TC20 777 aa14.02□□□□□ -0.17
CLK3-214ENST00000564096 POMGNT1Q8WZA1 660 aa14.02□□□□□ -0.17
CLK3-214ENST00000564096 ZNF668Q96K58 619 aaPredicted RBP14.02□□□□□ -0.17
CLK3-214ENST00000564096 MED15Q96RN5 788 aa14.02□□□□□ -0.17
CLK3-214ENST00000564096 SENP6Q9GZR1 1112 aaPredicted RBP14.02□□□□□ -0.17
CLK3-214ENST00000564096 ADAMTS10Q9H324 1103 aa14.02□□□□□ -0.17
CLK3-214ENST00000564096 FZD8Q9H461 694 aa14.02□□□□□ -0.17
CLK3-214ENST00000564096 METTL14Q9HCE5 456 aaKnown RBP14.02□□□□□ -0.17
CLK3-214ENST00000564096 TRMT13Q9NUP7 481 aaKnown RBP14.02□□□□□ -0.17
CLK3-214ENST00000564096 ANKFY1Q9P2R3 1169 aa14.02□□□□□ -0.17
CLK3-214ENST00000564096 N4BP3O15049 544 aa14.01□□□□□ -0.17
CLK3-214ENST00000564096 CLIC2O15247 247 aa14.01□□□□□ -0.17
CLK3-214ENST00000564096 B4GALT4O60513 344 aa14.01□□□□□ -0.17
CLK3-214ENST00000564096 CTSHP09668 335 aa14.01□□□□□ -0.17
CLK3-214ENST00000564096 EIF4BP23588 611 aaKnown RBP14.01□□□□□ -0.17
CLK3-214ENST00000564096 PSMC2P35998 433 aaKnown RBP14.01□□□□□ -0.17
CLK3-214ENST00000564096 MTIF2P46199 727 aaKnown RBP14.01□□□□□ -0.17
CLK3-214ENST00000564096 PPP2R3AQ06190 1150 aa14.01□□□□□ -0.17
CLK3-214ENST00000564096 BFSP2Q13515 415 aa14.01□□□□□ -0.17
CLK3-214ENST00000564096 NOLC1Q14978 699 aaKnown RBP eCLIP14.01□□□□□ -0.17
CLK3-214ENST00000564096 ZNF568Q3ZCX4 644 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms