RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-223ENST00000560858 COL4A3Q01955 1670 aa3.12□□□□□ -1.91
SPG11-223ENST00000560858 USP54Q70EL1 1684 aa3.12□□□□□ -1.91
SPG11-223ENST00000560858 ATP7BP35670 1465 aa3.12□□□□□ -1.91
SPG11-223ENST00000560858 FAM90A27PA6NNH2 459 aa3.12□□□□□ -1.91
SPG11-223ENST00000560858 GOLGA8BA8MQT2 603 aa3.12□□□□□ -1.91
SPG11-223ENST00000560858 MFAP3LO75121 409 aa3.12□□□□□ -1.91
SPG11-223ENST00000560858 DDAH1O94760 285 aa3.12□□□□□ -1.91
SPG11-223ENST00000560858 GRIA2P42262 883 aa3.12□□□□□ -1.91
SPG11-223ENST00000560858 USP14P54578 494 aa3.12□□□□□ -1.91
SPG11-223ENST00000560858 MOGSQ13724 837 aa3.12□□□□□ -1.91
SPG11-223ENST00000560858 TMEM200BQ69YZ2 307 aa3.12□□□□□ -1.91
SPG11-223ENST00000560858 FAM111BQ6SJ93 734 aa3.12□□□□□ -1.91
SPG11-223ENST00000560858 ARHGAP36Q6ZRI8 547 aa3.12□□□□□ -1.91
SPG11-223ENST00000560858 SKAP1Q86WV1 359 aa3.12□□□□□ -1.91
SPG11-223ENST00000560858 PUM2Q8TB72 1066 aaKnown RBP eCLIP3.12□□□□□ -1.91
SPG11-223ENST00000560858 MNTQ99583 582 aa3.12□□□□□ -1.91
SPG11-223ENST00000560858 ALG1Q9BT22 464 aa3.12□□□□□ -1.91
SPG11-223ENST00000560858 EPN3Q9H201 632 aa3.12□□□□□ -1.91
SPG11-223ENST00000560858 SYNPO2LQ9H987 977 aa3.12□□□□□ -1.91
SPG11-223ENST00000560858 TRPS1Q9UHF7 1281 aa3.12□□□□□ -1.91
SPG11-223ENST00000560858 VWA7Q9Y334 891 aa3.12□□□□□ -1.91
SPG11-223ENST00000560858 LAS1LQ9Y4W2 734 aaKnown RBP3.12□□□□□ -1.91
SPG11-223ENST00000560858 ATP23Q9Y6H3 246 aa3.12□□□□□ -1.91
SPG11-223ENST00000560858 CPS1P31327 1500 aa3.12□□□□□ -1.91
SPG11-223ENST00000560858 SPATA31A6Q5VVP1 1343 aa3.12□□□□□ -1.91
SPG11-223ENST00000560858 RPGRIP1LQ68CZ1 1315 aa3.12□□□□□ -1.91
SPG11-223ENST00000560858 CENPJQ9HC77 1338 aaPredicted RBP3.12□□□□□ -1.91
SPG11-223ENST00000560858 SPATA31D1Q6ZQQ2 1576 aa3.12□□□□□ -1.91
SPG11-223ENST00000560858 LRRC37A3O60309 1634 aa3.11□□□□□ -1.91
SPG11-223ENST00000560858 ALKQ9UM73 1620 aa3.11□□□□□ -1.91
SPG11-223ENST00000560858 CD109Q6YHK3 1445 aa3.11□□□□□ -1.91
SPG11-223ENST00000560858 FAM208AQ9UK61 1670 aaKnown RBP3.11□□□□□ -1.91
SPG11-223ENST00000560858 AGLP35573 1532 aa3.11□□□□□ -1.91
SPG11-223ENST00000560858 ARHGEF40Q8TER5 1519 aa3.11□□□□□ -1.91
SPG11-223ENST00000560858 GRID2IPA4D2P6 1211 aa3.11□□□□□ -1.91
SPG11-223ENST00000560858 APAF1O14727 1248 aa3.11□□□□□ -1.91
SPG11-223ENST00000560858 IKBKBO14920 756 aa3.11□□□□□ -1.91
SPG11-223ENST00000560858 DLX3O60479 287 aa3.11□□□□□ -1.91
SPG11-223ENST00000560858 H2AFYO75367 372 aaKnown RBP3.11□□□□□ -1.91
SPG11-223ENST00000560858 CAPNS1P04632 268 aa3.11□□□□□ -1.91
SPG11-223ENST00000560858 AOAHP28039 575 aa3.11□□□□□ -1.91
SPG11-223ENST00000560858 STAT5BP51692 787 aa3.11□□□□□ -1.91
SPG11-223ENST00000560858 ADCY7P51828 1080 aa3.11□□□□□ -1.91
SPG11-223ENST00000560858 SESN2P58004 480 aaPredicted RBP3.11□□□□□ -1.91
SPG11-223ENST00000560858 GPR85P60893 370 aa3.11□□□□□ -1.91
SPG11-223ENST00000560858 HERVK_113P62684 666 aa3.11□□□□□ -1.91
SPG11-223ENST00000560858 PPP2R2AP63151 447 aa3.11□□□□□ -1.91
SPG11-223ENST00000560858 ATP2C1P98194 919 aaPredicted RBP3.11□□□□□ -1.91
SPG11-223ENST00000560858 MAP3K12Q12852 859 aa3.11□□□□□ -1.91
SPG11-223ENST00000560858 SAFB2Q14151 953 aaKnown RBP eCLIP3.11□□□□□ -1.91
SPG11-223ENST00000560858 ERCC6LQ2NKX8 1250 aa3.11□□□□□ -1.91
SPG11-223ENST00000560858 TIGD2Q4W5G0 525 aa3.11□□□□□ -1.91
SPG11-223ENST00000560858 LARP1BQ659C4 914 aaKnown RBP3.11□□□□□ -1.91
SPG11-223ENST00000560858 MFSD5Q6N075 450 aa3.11□□□□□ -1.91
SPG11-223ENST00000560858 FBXO42Q6P3S6 717 aa3.11□□□□□ -1.91
SPG11-223ENST00000560858 LRRC55Q6ZSA7 311 aa3.11□□□□□ -1.91
SPG11-223ENST00000560858 DPH6Q7L8W6 267 aa3.11□□□□□ -1.91
SPG11-223ENST00000560858 EEPD1Q7L9B9 569 aa3.11□□□□□ -1.91
SPG11-223ENST00000560858 AFAP1Q8N556 730 aa3.11□□□□□ -1.91
SPG11-223ENST00000560858 SUPT20HQ8NEM7 779 aa3.11□□□□□ -1.91
SPG11-223ENST00000560858 ATXN2LQ8WWM7 1075 aaKnown RBP3.11□□□□□ -1.91
SPG11-223ENST00000560858 C16orf92Q96LL3 132 aa3.11□□□□□ -1.91
SPG11-223ENST00000560858 BRIP1Q9BX63 1249 aa3.11□□□□□ -1.91
SPG11-223ENST00000560858 OR10A5Q9H207 317 aa3.11□□□□□ -1.91
SPG11-223ENST00000560858 SLC6A15Q9H2J7 730 aa3.11□□□□□ -1.91
SPG11-223ENST00000560858 RSAD1Q9HA92 442 aa3.11□□□□□ -1.91
SPG11-223ENST00000560858 SRPK3Q9UPE1 567 aa3.11□□□□□ -1.91
SPG11-223ENST00000560858 INSL6Q9Y581 213 aa3.11□□□□□ -1.91
SPG11-223ENST00000560858 CTDP1Q9Y5B0 961 aaPredicted RBP3.11□□□□□ -1.91
SPG11-223ENST00000560858 A0A1W2PP64 1363 aa3.11□□□□□ -1.91
SPG11-223ENST00000560858 CACNA1FO60840 1977 aa3.11□□□□□ -1.91
SPG11-223ENST00000560858 PTCH1Q13635 1447 aa3.1□□□□□ -1.91
SPG11-223ENST00000560858 FAM135BQ49AJ0 1406 aa3.1□□□□□ -1.91
SPG11-223ENST00000560858 YEATS2Q9ULM3 1422 aa3.1□□□□□ -1.91
SPG11-223ENST00000560858 CDK12Q9NYV4 1490 aaPredicted RBP3.1□□□□□ -1.91
SPG11-223ENST00000560858 DIP2BQ9P265 1576 aa3.1□□□□□ -1.91
SPG11-223ENST00000560858 KIF3BO15066 747 aa3.1□□□□□ -1.91
SPG11-223ENST00000560858 RECQL4O94761 1208 aa3.1□□□□□ -1.91
SPG11-223ENST00000560858 CT47B1P0C2W7 299 aaPredicted RBP3.1□□□□□ -1.91
SPG11-223ENST00000560858 GJA8P48165 433 aa3.1□□□□□ -1.91
SPG11-223ENST00000560858 RABGGTBP53611 331 aa3.1□□□□□ -1.91
SPG11-223ENST00000560858 KRTAP10-7P60409 375 aaPredicted RBP3.1□□□□□ -1.91
SPG11-223ENST00000560858 ADAM15Q13444 863 aa3.1□□□□□ -1.91
SPG11-223ENST00000560858 HSP90AA2PQ14568 343 aaPredicted RBP3.1□□□□□ -1.91
SPG11-223ENST00000560858 GPR19Q15760 415 aa3.1□□□□□ -1.91
SPG11-223ENST00000560858 FXNQ16595 210 aa3.1□□□□□ -1.91
SPG11-223ENST00000560858 TNNI3KQ59H18 835 aa3.1□□□□□ -1.91
SPG11-223ENST00000560858 NBPF6Q5VWK0 638 aa3.1□□□□□ -1.91
SPG11-223ENST00000560858 KANK2Q63ZY3 851 aa3.1□□□□□ -1.91
SPG11-223ENST00000560858 KCNT2Q6UVM3 1135 aa3.1□□□□□ -1.91
SPG11-223ENST00000560858 WDR63Q8IWG1 891 aa3.1□□□□□ -1.91
SPG11-223ENST00000560858 ZC3H7AQ8IWR0 971 aaKnown RBP3.1□□□□□ -1.91
SPG11-223ENST00000560858 CCDC146Q8IYE0 955 aa3.1□□□□□ -1.91
SPG11-223ENST00000560858 SH3RF2Q8TEC5 729 aa3.1□□□□□ -1.91
SPG11-223ENST00000560858 GCDHQ92947 438 aaPredicted RBP3.1□□□□□ -1.91
SPG11-223ENST00000560858 RUNDC1Q96C34 613 aa3.1□□□□□ -1.91
SPG11-223ENST00000560858 RPL10LQ96L21 214 aaKnown RBP3.1□□□□□ -1.91
SPG11-223ENST00000560858 NBPF4Q96M43 638 aa3.1□□□□□ -1.91
SPG11-223ENST00000560858 FAM193BQ96PV7 902 aaPredicted RBP3.1□□□□□ -1.91
SPG11-223ENST00000560858 TCF25Q9BQ70 676 aa3.1□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms