RNA–Protein interactions for RNA: ENST00000559347.1

SPG11-216, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 716 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-216ENST00000559347 CDC25AP30304 524 aa12.13□□□□□ -0.47
SPG11-216ENST00000559347 HYAL1Q12794 435 aa12.13□□□□□ -0.47
SPG11-216ENST00000559347 KRT79Q5XKE5 535 aa12.13□□□□□ -0.47
SPG11-216ENST00000559347 ARL6IP4Q66PJ3 421 aaKnown RBP12.13□□□□□ -0.47
SPG11-216ENST00000559347 KCNT2Q6UVM3 1135 aa12.13□□□□□ -0.47
SPG11-216ENST00000559347 GLB1LQ6UWU2 654 aa12.13□□□□□ -0.47
SPG11-216ENST00000559347 AGMOQ6ZNB7 445 aa12.13□□□□□ -0.47
SPG11-216ENST00000559347 MRPL10Q7Z7H8 261 aaKnown RBP12.13□□□□□ -0.47
SPG11-216ENST00000559347 ADGRD2Q7Z7M1 963 aa12.13□□□□□ -0.47
SPG11-216ENST00000559347 SMG8Q8ND04 991 aaKnown RBP12.13□□□□□ -0.47
SPG11-216ENST00000559347 PABPC5Q96DU9 382 aaKnown RBP12.13□□□□□ -0.47
SPG11-216ENST00000559347 CCDC51Q96ER9 411 aa12.13□□□□□ -0.47
SPG11-216ENST00000559347 INTS4Q96HW7 963 aaKnown RBP12.13□□□□□ -0.47
SPG11-216ENST00000559347 CPB2Q96IY4 423 aa12.13□□□□□ -0.47
SPG11-216ENST00000559347 ZNF558Q96NG5 402 aa12.13□□□□□ -0.47
SPG11-216ENST00000559347 TLR9Q9NR96 1032 aa12.13□□□□□ -0.47
SPG11-216ENST00000559347 TBC1D13Q9NVG8 400 aa12.13□□□□□ -0.47
SPG11-216ENST00000559347 PCDHGC5Q9Y5F6 944 aa12.13□□□□□ -0.47
SPG11-216ENST00000559347 CNTNAP2Q9UHC6 1331 aa12.12□□□□□ -0.47
SPG11-216ENST00000559347 E9PMD0 336 aa12.12□□□□□ -0.47
SPG11-216ENST00000559347 OFD1O75665 1012 aa12.12□□□□□ -0.47
SPG11-216ENST00000559347 EYA4O95677 639 aa12.12□□□□□ -0.47
SPG11-216ENST00000559347 NCLP19338 710 aaKnown RBP12.12□□□□□ -0.47
SPG11-216ENST00000559347 GTF2F1P35269 517 aaKnown RBP eCLIP12.12□□□□□ -0.47
SPG11-216ENST00000559347 NAMPTP43490 491 aa12.12□□□□□ -0.47
SPG11-216ENST00000559347 PLCB3Q01970 1234 aa12.12□□□□□ -0.47
SPG11-216ENST00000559347 HYIQ5T013 277 aa12.12□□□□□ -0.47
SPG11-216ENST00000559347 KCNK18Q7Z418 384 aa12.12□□□□□ -0.47
SPG11-216ENST00000559347 SLC39A11Q8N1S5 342 aa12.12□□□□□ -0.47
SPG11-216ENST00000559347 MRPS27Q92552 414 aaKnown RBP12.12□□□□□ -0.47
SPG11-216ENST00000559347 PGBD4Q96DM1 585 aa12.12□□□□□ -0.47
SPG11-216ENST00000559347 PRIMPOLQ96LW4 560 aa12.12□□□□□ -0.47
SPG11-216ENST00000559347 EIF2AQ9BY44 585 aaKnown RBP12.12□□□□□ -0.47
SPG11-216ENST00000559347 CCDC113Q9H0I3 377 aa12.12□□□□□ -0.47
SPG11-216ENST00000559347 CSRNP2Q9H175 543 aa12.12□□□□□ -0.47
SPG11-216ENST00000559347 RSAD1Q9HA92 442 aa12.12□□□□□ -0.47
SPG11-216ENST00000559347 PRMT7Q9NVM4 692 aaPredicted RBP12.12□□□□□ -0.47
SPG11-216ENST00000559347 CLDND1Q9NY35 253 aa12.12□□□□□ -0.47
SPG11-216ENST00000559347 LZTS1Q9Y250 596 aa12.12□□□□□ -0.47
SPG11-216ENST00000559347 INPP5FQ9Y2H2 1132 aa12.12□□□□□ -0.47
SPG11-216ENST00000559347 IPPQ9Y573 584 aa12.12□□□□□ -0.47
SPG11-216ENST00000559347 CITO14578 2027 aa12.11□□□□□ -0.47
SPG11-216ENST00000559347 ZMYM2Q9UBW7 1377 aa12.11□□□□□ -0.47
SPG11-216ENST00000559347 FSCN2O14926 492 aa12.11□□□□□ -0.47
SPG11-216ENST00000559347 B4GALT3O60512 393 aa12.11□□□□□ -0.47
SPG11-216ENST00000559347 ZC3H11AO75152 810 aaKnown RBP eCLIP12.11□□□□□ -0.47
SPG11-216ENST00000559347 TBX10O75333 385 aa12.11□□□□□ -0.47
SPG11-216ENST00000559347 SYT1P21579 422 aa12.11□□□□□ -0.47
SPG11-216ENST00000559347 BCAR1P56945 870 aa12.11□□□□□ -0.47
SPG11-216ENST00000559347 RESTQ13127 1097 aa12.11□□□□□ -0.47
SPG11-216ENST00000559347 PPP2R5AQ15172 486 aa12.11□□□□□ -0.47
SPG11-216ENST00000559347 FAM187BQ17R55 369 aa12.11□□□□□ -0.47
SPG11-216ENST00000559347 CTC1Q2NKJ3 1217 aa12.11□□□□□ -0.47
SPG11-216ENST00000559347 LEXMQ3ZCV2 418 aa12.11□□□□□ -0.47
SPG11-216ENST00000559347 NOMO2Q5JPE7 1267 aa12.11□□□□□ -0.47
SPG11-216ENST00000559347 SLC27A1Q6PCB7 646 aa12.11□□□□□ -0.47
SPG11-216ENST00000559347 ZBTB8OSQ8IWT0 167 aa12.11□□□□□ -0.47
SPG11-216ENST00000559347 CNNM3Q8NE01 707 aa12.11□□□□□ -0.47
SPG11-216ENST00000559347 URGCPQ8TCY9 931 aa12.11□□□□□ -0.47
SPG11-216ENST00000559347 KIFAP3Q92845 792 aa12.11□□□□□ -0.47
SPG11-216ENST00000559347 PPP2R3CQ969Q6 453 aa12.11□□□□□ -0.47
SPG11-216ENST00000559347 PNMA5Q96PV4 448 aa12.11□□□□□ -0.47
SPG11-216ENST00000559347 UHRF1Q96T88 793 aaPredicted RBP12.11□□□□□ -0.47
SPG11-216ENST00000559347 NT5C3AQ9H0P0 336 aa12.11□□□□□ -0.47
SPG11-216ENST00000559347 C2orf40Q9H1Z8 148 aa12.11□□□□□ -0.47
SPG11-216ENST00000559347 NXF3Q9H4D5 531 aaKnown RBP12.11□□□□□ -0.47
SPG11-216ENST00000559347 DNM3Q9UQ16 869 aa12.11□□□□□ -0.47
SPG11-216ENST00000559347 A0A1B0GUA9 196 aa12.1□□□□□ -0.47
SPG11-216ENST00000559347 H3BQ06 376 aaPredicted RBP12.1□□□□□ -0.47
SPG11-216ENST00000559347 INPPL1O15357 1258 aa12.1□□□□□ -0.47
SPG11-216ENST00000559347 LINC01565O15544 149 aa12.1□□□□□ -0.47
SPG11-216ENST00000559347 NCK2O43639 380 aa12.1□□□□□ -0.47
SPG11-216ENST00000559347 BMP15O95972 392 aa12.1□□□□□ -0.47
SPG11-216ENST00000559347 EDN1P05305 212 aa12.1□□□□□ -0.47
SPG11-216ENST00000559347 ITGA4P13612 1032 aa12.1□□□□□ -0.47
SPG11-216ENST00000559347 LTBRP36941 435 aa12.1□□□□□ -0.47
SPG11-216ENST00000559347 AFF1P51825 1210 aaKnown RBP12.1□□□□□ -0.47
SPG11-216ENST00000559347 ERVFC1P60507 584 aa12.1□□□□□ -0.47
SPG11-216ENST00000559347 NCBP1Q09161 790 aaKnown RBP12.1□□□□□ -0.47
SPG11-216ENST00000559347 MAPK7Q13164 816 aa12.1□□□□□ -0.47
SPG11-216ENST00000559347 SF3A1Q15459 793 aaKnown RBP12.1□□□□□ -0.47
SPG11-216ENST00000559347 TMEM119Q4V9L6 283 aa12.1□□□□□ -0.47
SPG11-216ENST00000559347 TMEM173Q86WV6 379 aaPredicted RBP12.1□□□□□ -0.47
SPG11-216ENST00000559347 CDR2LQ86X02 465 aaPredicted RBP12.1□□□□□ -0.47
SPG11-216ENST00000559347 DAW1Q8N136 415 aa12.1□□□□□ -0.47
SPG11-216ENST00000559347 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.1□□□□□ -0.47
SPG11-216ENST00000559347 SNX21Q969T3 373 aa12.1□□□□□ -0.47
SPG11-216ENST00000559347 AK8Q96MA6 479 aa12.1□□□□□ -0.47
SPG11-216ENST00000559347 NECAB3Q96P71 396 aaPredicted RBP12.1□□□□□ -0.47
SPG11-216ENST00000559347 KIFC3Q9BVG8 833 aa12.1□□□□□ -0.47
SPG11-216ENST00000559347 RUSC1Q9BVN2 902 aa12.1□□□□□ -0.47
SPG11-216ENST00000559347 FZD8Q9H461 694 aa12.1□□□□□ -0.47
SPG11-216ENST00000559347 NRDE2Q9H7Z3 1164 aa12.1□□□□□ -0.47
SPG11-216ENST00000559347 POLD4Q9HCU8 107 aa12.1□□□□□ -0.47
SPG11-216ENST00000559347 SPG21Q9NZD8 308 aa12.1□□□□□ -0.47
SPG11-216ENST00000559347 DNAJB4Q9UDY4 337 aa12.1□□□□□ -0.47
SPG11-216ENST00000559347 HES2Q9Y543 173 aa12.1□□□□□ -0.47
SPG11-216ENST00000559347 PLXNA3P51805 1871 aa12.1□□□□□ -0.47
SPG11-216ENST00000559347 PHLPP2Q6ZVD8 1323 aa12.1□□□□□ -0.47
SPG11-216ENST00000559347 DENND4AQ7Z401 1863 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms