RNA–Protein interactions for RNA: ENST00000558471.5

LRRC28-206, Transcript of leucine rich repeat containing 28, humanhuman

TSL 3

Gene LRRC28, Length 793 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-206ENST00000558471 UBXN11Q5T124 520 aa13.78□□□□□ -0.2
LRRC28-206ENST00000558471 ZNF697Q5TEC3 545 aa13.78□□□□□ -0.2
LRRC28-206ENST00000558471 PPP4R3CPQ6ZMV5 832 aa13.78□□□□□ -0.2
LRRC28-206ENST00000558471 ZNF598Q86UK7 904 aaKnown RBP13.78□□□□□ -0.2
LRRC28-206ENST00000558471 MYCT1Q8N699 235 aa13.78□□□□□ -0.2
LRRC28-206ENST00000558471 SP7Q8TDD2 431 aaPredicted RBP13.78□□□□□ -0.2
LRRC28-206ENST00000558471 SPIRE2Q8WWL2 714 aa13.78□□□□□ -0.2
LRRC28-206ENST00000558471 DDX12PQ92771 950 aa13.78□□□□□ -0.2
LRRC28-206ENST00000558471 DNAJC19Q96DA6 116 aa13.78□□□□□ -0.2
LRRC28-206ENST00000558471 PRIMPOLQ96LW4 560 aa13.78□□□□□ -0.2
LRRC28-206ENST00000558471 FAM161BQ96MY7 647 aa13.78□□□□□ -0.2
LRRC28-206ENST00000558471 CUEDC2Q9H467 287 aa13.78□□□□□ -0.2
LRRC28-206ENST00000558471 FAM105AQ9NUU6 356 aa13.78□□□□□ -0.2
LRRC28-206ENST00000558471 LARSQ9P2J5 1176 aaKnown RBP13.78□□□□□ -0.2
LRRC28-206ENST00000558471 ARHGAP28Q9P2N2 729 aa13.78□□□□□ -0.2
LRRC28-206ENST00000558471 KCNG1Q9UIX4 513 aa13.78□□□□□ -0.2
LRRC28-206ENST00000558471 KCNH3Q9ULD8 1083 aa13.78□□□□□ -0.2
LRRC28-206ENST00000558471 COL4A6Q14031 1691 aa13.78□□□□□ -0.2
LRRC28-206ENST00000558471 SZT2Q5T011 3432 aa13.77□□□□□ -0.2
LRRC28-206ENST00000558471 TMEM265A0A087WTH1 108 aa13.77□□□□□ -0.21
LRRC28-206ENST00000558471 A0A1B0GUA9 196 aa13.77□□□□□ -0.21
LRRC28-206ENST00000558471 ACKR2O00590 384 aa13.77□□□□□ -0.21
LRRC28-206ENST00000558471 ZNF623O75123 536 aa13.77□□□□□ -0.21
LRRC28-206ENST00000558471 FAM13AO94988 1023 aa13.77□□□□□ -0.21
LRRC28-206ENST00000558471 EOMESO95936 686 aa13.77□□□□□ -0.21
LRRC28-206ENST00000558471 PRKCBP05771 671 aa13.77□□□□□ -0.21
LRRC28-206ENST00000558471 FGFR1P11362 822 aa13.77□□□□□ -0.21
LRRC28-206ENST00000558471 PFKFB1P16118 471 aa13.77□□□□□ -0.21
LRRC28-206ENST00000558471 ATF7P17544 494 aaPredicted RBP13.77□□□□□ -0.21
LRRC28-206ENST00000558471 SMTNP53814 917 aa13.77□□□□□ -0.21
LRRC28-206ENST00000558471 PRPF4BQ13523 1007 aaKnown RBP13.77□□□□□ -0.21
LRRC28-206ENST00000558471 PPP2R2DQ66LE6 453 aa13.77□□□□□ -0.21
LRRC28-206ENST00000558471 NOTUMQ6P988 496 aa13.77□□□□□ -0.21
LRRC28-206ENST00000558471 TAS1R3Q7RTX0 852 aa13.77□□□□□ -0.21
LRRC28-206ENST00000558471 SPRED2Q7Z698 418 aa13.77□□□□□ -0.21
LRRC28-206ENST00000558471 NLRC5Q86WI3 1866 aa13.77□□□□□ -0.21
LRRC28-206ENST00000558471 CDR2LQ86X02 465 aaPredicted RBP13.77□□□□□ -0.21
LRRC28-206ENST00000558471 DEFB123Q8N688 67 aa13.77□□□□□ -0.21
LRRC28-206ENST00000558471 RNF169Q8NCN4 708 aa13.77□□□□□ -0.21
LRRC28-206ENST00000558471 EIF2AQ9BY44 585 aaKnown RBP13.77□□□□□ -0.21
LRRC28-206ENST00000558471 ZHX3Q9H4I2 956 aa13.77□□□□□ -0.21
LRRC28-206ENST00000558471 TMEM134Q9H6X4 195 aa13.77□□□□□ -0.21
LRRC28-206ENST00000558471 PARVGQ9HBI0 331 aa13.77□□□□□ -0.21
LRRC28-206ENST00000558471 RNF19AQ9NV58 838 aa13.77□□□□□ -0.21
LRRC28-206ENST00000558471 KBTBD4Q9NVX7 518 aa13.77□□□□□ -0.21
LRRC28-206ENST00000558471 RNF216Q9NWF9 866 aaPredicted RBP13.77□□□□□ -0.21
LRRC28-206ENST00000558471 HPSEQ9Y251 543 aa13.77□□□□□ -0.21
LRRC28-206ENST00000558471 PCDHB2Q9Y5E7 798 aa13.77□□□□□ -0.21
LRRC28-206ENST00000558471 CNTNAP2Q9UHC6 1331 aa13.76□□□□□ -0.21
LRRC28-206ENST00000558471 FAM237AA0A1B0GTK4 181 aa13.76□□□□□ -0.21
LRRC28-206ENST00000558471 A0A1W2PQ27 194 aa13.76□□□□□ -0.21
LRRC28-206ENST00000558471 A0A1W2PQ64 194 aa13.76□□□□□ -0.21
LRRC28-206ENST00000558471 A0A1W2PQD8 194 aa13.76□□□□□ -0.21
LRRC28-206ENST00000558471 LINC01553A4QN01 128 aa13.76□□□□□ -0.21
LRRC28-206ENST00000558471 TRAK2O60296 914 aa13.76□□□□□ -0.21
LRRC28-206ENST00000558471 TBCAO75347 108 aaKnown RBP13.76□□□□□ -0.21
LRRC28-206ENST00000558471 SKIP12755 728 aa13.76□□□□□ -0.21
LRRC28-206ENST00000558471 RAB27AP51159 221 aa13.76□□□□□ -0.21
LRRC28-206ENST00000558471 BTG3Q14201 252 aaPredicted RBP13.76□□□□□ -0.21
LRRC28-206ENST00000558471 LONRF3Q496Y0 759 aa13.76□□□□□ -0.21
LRRC28-206ENST00000558471 NT5DC1Q5TFE4 455 aa13.76□□□□□ -0.21
LRRC28-206ENST00000558471 MRPL10Q7Z7H8 261 aaKnown RBP13.76□□□□□ -0.21
LRRC28-206ENST00000558471 TMEM161BQ8NDZ6 487 aa13.76□□□□□ -0.21
LRRC28-206ENST00000558471 LPPQ93052 612 aa13.76□□□□□ -0.21
LRRC28-206ENST00000558471 IPO9Q96P70 1041 aaKnown RBP13.76□□□□□ -0.21
LRRC28-206ENST00000558471 TNMDQ9H2S6 317 aa13.76□□□□□ -0.21
LRRC28-206ENST00000558471 CERS4Q9HA82 394 aa13.76□□□□□ -0.21
LRRC28-206ENST00000558471 SERTAD1Q9UHV2 236 aa13.76□□□□□ -0.21
LRRC28-206ENST00000558471 PHLPP2Q6ZVD8 1323 aa13.75□□□□□ -0.21
LRRC28-206ENST00000558471 TBKBP1A7MCY6 615 aa13.75□□□□□ -0.21
LRRC28-206ENST00000558471 MEIS3P2A8K0S8 358 aa13.75□□□□□ -0.21
LRRC28-206ENST00000558471 MAPTP10636 758 aaKnown RBP13.75□□□□□ -0.21
LRRC28-206ENST00000558471 NDUFA8P51970 172 aa13.75□□□□□ -0.21
LRRC28-206ENST00000558471 NCKAP1LP55160 1127 aa13.75□□□□□ -0.21
LRRC28-206ENST00000558471 GRIN2CQ14957 1233 aa13.75□□□□□ -0.21
LRRC28-206ENST00000558471 PAN2Q504Q3 1202 aaKnown RBP13.75□□□□□ -0.21
LRRC28-206ENST00000558471 CLLU1OSQ5K130 101 aa13.75□□□□□ -0.21
LRRC28-206ENST00000558471 SLC27A1Q6PCB7 646 aa13.75□□□□□ -0.21
LRRC28-206ENST00000558471 HAUS6Q7Z4H7 955 aa13.75□□□□□ -0.21
LRRC28-206ENST00000558471 CMTR2Q8IYT2 770 aaKnown RBP13.75□□□□□ -0.21
LRRC28-206ENST00000558471 FIBCD1Q8N539 461 aa13.75□□□□□ -0.21
LRRC28-206ENST00000558471 FSIP1Q8NA03 581 aa13.75□□□□□ -0.21
LRRC28-206ENST00000558471 SMG8Q8ND04 991 aaKnown RBP13.75□□□□□ -0.21
LRRC28-206ENST00000558471 CCDC51Q96ER9 411 aa13.75□□□□□ -0.21
LRRC28-206ENST00000558471 CASD1Q96PB1 797 aa13.75□□□□□ -0.21
LRRC28-206ENST00000558471 FIZ1Q96SL8 496 aa13.75□□□□□ -0.21
LRRC28-206ENST00000558471 PYM1Q9BRP8 204 aaKnown RBP13.75□□□□□ -0.21
LRRC28-206ENST00000558471 LRRC27Q9C0I9 530 aa13.75□□□□□ -0.21
LRRC28-206ENST00000558471 PDZD7Q9H5P4 517 aa13.75□□□□□ -0.21
LRRC28-206ENST00000558471 MTMR10Q9NXD2 777 aa13.75□□□□□ -0.21
LRRC28-206ENST00000558471 KIAA1671Q9BY89 1806 aa13.75□□□□□ -0.21
LRRC28-206ENST00000558471 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.74□□□□□ -0.21
LRRC28-206ENST00000558471 N4BP3O15049 544 aa13.74□□□□□ -0.21
LRRC28-206ENST00000558471 HOXA2O43364 376 aa13.74□□□□□ -0.21
LRRC28-206ENST00000558471 ACTN4O43707 911 aaKnown RBP13.74□□□□□ -0.21
LRRC28-206ENST00000558471 NPTXRO95502 500 aa13.74□□□□□ -0.21
LRRC28-206ENST00000558471 SLFN14P0C7P3 912 aa13.74□□□□□ -0.21
LRRC28-206ENST00000558471 LINC00271P0C7V0 271 aa13.74□□□□□ -0.21
LRRC28-206ENST00000558471 IDEP14735 1019 aa13.74□□□□□ -0.21
LRRC28-206ENST00000558471 NMT1P30419 496 aaKnown RBP13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms