RNA–Protein interactions for RNA: ENST00000557740.5

SHMT2-235, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-235ENST00000557740 CXCL14O95715 111 aa16.29■□□□□ 0.2
SHMT2-235ENST00000557740 HOXA11P31270 313 aaPredicted RBP16.29■□□□□ 0.2
SHMT2-235ENST00000557740 SLC11A1P49279 550 aa16.29■□□□□ 0.2
SHMT2-235ENST00000557740 NCBP1Q09161 790 aaKnown RBP16.29■□□□□ 0.2
SHMT2-235ENST00000557740 PCBP1Q15365 356 aaKnown RBP eCLIP16.29■□□□□ 0.2
SHMT2-235ENST00000557740 SYCE2Q6PIF2 218 aa16.29■□□□□ 0.2
SHMT2-235ENST00000557740 AGMOQ6ZNB7 445 aa16.29■□□□□ 0.2
SHMT2-235ENST00000557740 FAM193BQ96PV7 902 aaPredicted RBP16.29■□□□□ 0.2
SHMT2-235ENST00000557740 HSD17B14Q9BPX1 270 aa16.29■□□□□ 0.2
SHMT2-235ENST00000557740 S1PR5Q9H228 398 aa16.29■□□□□ 0.2
SHMT2-235ENST00000557740 ANKEF1Q9NU02 776 aa16.29■□□□□ 0.2
SHMT2-235ENST00000557740 HCFC2Q9Y5Z7 792 aa16.29■□□□□ 0.2
SHMT2-235ENST00000557740 WNT7AO00755 349 aa16.28■□□□□ 0.2
SHMT2-235ENST00000557740 CLASP2O75122 1294 aaKnown RBP16.28■□□□□ 0.2
SHMT2-235ENST00000557740 GALTP07902 379 aa16.28■□□□□ 0.2
SHMT2-235ENST00000557740 ATP2B1P20020 1258 aa16.28■□□□□ 0.2
SHMT2-235ENST00000557740 AXLP30530 894 aa16.28■□□□□ 0.2
SHMT2-235ENST00000557740 MCM7P33993 719 aa16.28■□□□□ 0.2
SHMT2-235ENST00000557740 PTENP60484 403 aa16.28■□□□□ 0.2
SHMT2-235ENST00000557740 ST3GAL1Q11201 340 aa16.28■□□□□ 0.2
SHMT2-235ENST00000557740 GIT2Q14161 759 aa16.28■□□□□ 0.2
SHMT2-235ENST00000557740 UBXN11Q5T124 520 aa16.28■□□□□ 0.2
SHMT2-235ENST00000557740 CES5AQ6NT32 575 aa16.28■□□□□ 0.2
SHMT2-235ENST00000557740 NOTUMQ6P988 496 aa16.28■□□□□ 0.2
SHMT2-235ENST00000557740 HFE2Q6ZVN8 426 aa16.28■□□□□ 0.2
SHMT2-235ENST00000557740 MRPL10Q7Z7H8 261 aaKnown RBP16.28■□□□□ 0.2
SHMT2-235ENST00000557740 CNNM3Q8NE01 707 aa16.28■□□□□ 0.2
SHMT2-235ENST00000557740 BCL7CQ8WUZ0 217 aaPredicted RBP16.28■□□□□ 0.2
SHMT2-235ENST00000557740 AUTS2Q8WXX7 1259 aa16.28■□□□□ 0.2
SHMT2-235ENST00000557740 EDAQ92838 391 aa16.28■□□□□ 0.2
SHMT2-235ENST00000557740 CCDC51Q96ER9 411 aa16.28■□□□□ 0.2
SHMT2-235ENST00000557740 DZANK1Q9NVP4 752 aa16.28■□□□□ 0.2
SHMT2-235ENST00000557740 KANSL3Q9P2N6 904 aa16.28■□□□□ 0.2
SHMT2-235ENST00000557740 DNAJB4Q9UDY4 337 aa16.28■□□□□ 0.2
SHMT2-235ENST00000557740 STK39Q9UEW8 545 aa16.28■□□□□ 0.2
SHMT2-235ENST00000557740 LIMCH1Q9UPQ0 1083 aa16.28■□□□□ 0.2
SHMT2-235ENST00000557740 POTEMA6NI47 508 aa16.27■□□□□ 0.2
SHMT2-235ENST00000557740 TSPAN1O60635 241 aa16.27■□□□□ 0.2
SHMT2-235ENST00000557740 USO1O60763 962 aaKnown RBP16.27■□□□□ 0.2
SHMT2-235ENST00000557740 CTSAP10619 480 aa16.27■□□□□ 0.2
SHMT2-235ENST00000557740 ITGA4P13612 1032 aa16.27■□□□□ 0.2
SHMT2-235ENST00000557740 NCLP19338 710 aaKnown RBP16.27■□□□□ 0.2
SHMT2-235ENST00000557740 SP100P23497 879 aaPredicted RBP16.27■□□□□ 0.2
SHMT2-235ENST00000557740 GUCY1B3Q02153 619 aa16.27■□□□□ 0.2
SHMT2-235ENST00000557740 ITIH3Q06033 890 aa16.27■□□□□ 0.2
SHMT2-235ENST00000557740 CAPSQ13938 189 aa16.27■□□□□ 0.2
SHMT2-235ENST00000557740 ZNF280BQ86YH2 543 aa16.27■□□□□ 0.2
SHMT2-235ENST00000557740 CCDC83Q8IWF9 413 aa16.27■□□□□ 0.2
SHMT2-235ENST00000557740 ASAP3Q8TDY4 903 aa16.27■□□□□ 0.2
SHMT2-235ENST00000557740 PIGOQ8TEQ8 1089 aa16.27■□□□□ 0.2
SHMT2-235ENST00000557740 C8orf76Q96K31 380 aa16.27■□□□□ 0.2
SHMT2-235ENST00000557740 MFSD14AQ96MC6 490 aa16.27■□□□□ 0.2
SHMT2-235ENST00000557740 MTMR9Q96QG7 549 aa16.27■□□□□ 0.2
SHMT2-235ENST00000557740 POLR3FQ9H1D9 316 aaPredicted RBP16.27■□□□□ 0.2
SHMT2-235ENST00000557740 UBN1Q9NPG3 1134 aa16.27■□□□□ 0.2
SHMT2-235ENST00000557740 IRAK3Q9Y616 596 aa16.27■□□□□ 0.2
SHMT2-235ENST00000557740 B4GALT3O60512 393 aa16.26■□□□□ 0.19
SHMT2-235ENST00000557740 SEC24BO95487 1268 aa16.26■□□□□ 0.19
SHMT2-235ENST00000557740 POMCP01189 267 aa16.26■□□□□ 0.19
SHMT2-235ENST00000557740 RARRES1P49788 294 aa16.26■□□□□ 0.19
SHMT2-235ENST00000557740 MBTD1Q05BQ5 628 aa16.26■□□□□ 0.19
SHMT2-235ENST00000557740 POU5F1BQ06416 359 aa16.26■□□□□ 0.19
SHMT2-235ENST00000557740 GNL2Q13823 731 aaKnown RBP16.26■□□□□ 0.19
SHMT2-235ENST00000557740 TRIM67Q6ZTA4 783 aa16.26■□□□□ 0.19
SHMT2-235ENST00000557740 ZBTB33Q86T24 672 aa16.26■□□□□ 0.19
SHMT2-235ENST00000557740 IFNLR1Q8IU57 520 aaPredicted RBP16.26■□□□□ 0.19
SHMT2-235ENST00000557740 HACE1Q8IYU2 909 aa16.26■□□□□ 0.19
SHMT2-235ENST00000557740 SMG8Q8ND04 991 aaKnown RBP16.26■□□□□ 0.19
SHMT2-235ENST00000557740 CPB2Q96IY4 423 aa16.26■□□□□ 0.19
SHMT2-235ENST00000557740 NECTIN4Q96NY8 510 aa16.26■□□□□ 0.19
SHMT2-235ENST00000557740 TMEM175Q9BSA9 504 aa16.26■□□□□ 0.19
SHMT2-235ENST00000557740 EIF2AQ9BY44 585 aaKnown RBP16.26■□□□□ 0.19
SHMT2-235ENST00000557740 TRIM6Q9C030 488 aaPredicted RBP16.26■□□□□ 0.19
SHMT2-235ENST00000557740 TMEM60Q9H2L4 133 aa16.26■□□□□ 0.19
SHMT2-235ENST00000557740 ADAM7Q9H2U9 754 aa16.26■□□□□ 0.19
SHMT2-235ENST00000557740 TSHZ2Q9NRE2 1034 aa16.26■□□□□ 0.19
SHMT2-235ENST00000557740 NR2E1Q9Y466 385 aa16.26■□□□□ 0.19
SHMT2-235ENST00000557740 IPPQ9Y573 584 aa16.26■□□□□ 0.19
SHMT2-235ENST00000557740 C5orf42Q9H799 3197 aa16.26■□□□□ 0.19
SHMT2-235ENST00000557740 TMEM221A6NGB7 291 aa16.25■□□□□ 0.19
SHMT2-235ENST00000557740 SPDYE4A6NLX3 237 aa16.25■□□□□ 0.19
SHMT2-235ENST00000557740 M0R296 226 aa16.25■□□□□ 0.19
SHMT2-235ENST00000557740 DDHD2O94830 711 aa16.25■□□□□ 0.19
SHMT2-235ENST00000557740 SSBP05455 408 aaKnown RBP eCLIP16.25■□□□□ 0.19
SHMT2-235ENST00000557740 ZXDAP98168 799 aa16.25■□□□□ 0.19
SHMT2-235ENST00000557740 PTPN14Q15678 1187 aa16.25■□□□□ 0.19
SHMT2-235ENST00000557740 RARS2Q5T160 578 aaKnown RBP16.25■□□□□ 0.19
SHMT2-235ENST00000557740 RIPOR3Q96MK2 946 aa16.25■□□□□ 0.19
SHMT2-235ENST00000557740 LLPHQ9BRT6 129 aaKnown RBP16.25■□□□□ 0.19
SHMT2-235ENST00000557740 APOL6Q9BWW8 343 aa16.25■□□□□ 0.19
SHMT2-235ENST00000557740 CSRNP2Q9H175 543 aa16.25■□□□□ 0.19
SHMT2-235ENST00000557740 TUFT1Q9NNX1 390 aa16.25■□□□□ 0.19
SHMT2-235ENST00000557740 CDH22Q9UJ99 828 aa16.25■□□□□ 0.19
SHMT2-235ENST00000557740 FAN1Q9Y2M0 1017 aa16.25■□□□□ 0.19
SHMT2-235ENST00000557740 PIEZO1Q92508 2521 aa16.24■□□□□ 0.19
SHMT2-235ENST00000557740 ARID2Q68CP9 1835 aa16.24■□□□□ 0.19
SHMT2-235ENST00000557740 ARL5CA6NH57 179 aa16.24■□□□□ 0.19
SHMT2-235ENST00000557740 LRRIQ4A6NIV6 560 aa16.24■□□□□ 0.19
SHMT2-235ENST00000557740 ALDH2P05091 517 aa16.24■□□□□ 0.19
SHMT2-235ENST00000557740 OR52Z1P0C646 297 aa16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms