RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 SRGNP10124 158 aa14.76□□□□□ -0.05
SHMT2-226ENST00000556825 MAGEA1P43355 309 aa14.76□□□□□ -0.05
SHMT2-226ENST00000556825 KIF11P52732 1056 aa14.76□□□□□ -0.05
SHMT2-226ENST00000556825 HNRNPDQ14103 355 aaKnown RBP14.76□□□□□ -0.05
SHMT2-226ENST00000556825 MYLK3Q32MK0 819 aa14.76□□□□□ -0.05
SHMT2-226ENST00000556825 TMC4Q7Z404 712 aa14.76□□□□□ -0.05
SHMT2-226ENST00000556825 UBE2Q1Q7Z7E8 422 aa14.76□□□□□ -0.05
SHMT2-226ENST00000556825 DTX3LQ8TDB6 740 aa14.76□□□□□ -0.05
SHMT2-226ENST00000556825 GIMAP1Q8WWP7 306 aa14.76□□□□□ -0.05
SHMT2-226ENST00000556825 APPBP2Q92624 585 aa14.76□□□□□ -0.05
SHMT2-226ENST00000556825 SPATA17Q96L03 361 aa14.76□□□□□ -0.05
SHMT2-226ENST00000556825 CCDC85AQ96PX6 553 aaPredicted RBP14.76□□□□□ -0.05
SHMT2-226ENST00000556825 LRRC37BQ96QE4 947 aa14.76□□□□□ -0.05
SHMT2-226ENST00000556825 TMEM109Q9BVC6 243 aa14.76□□□□□ -0.05
SHMT2-226ENST00000556825 CHPF2Q9P2E5 772 aa14.76□□□□□ -0.05
SHMT2-226ENST00000556825 TTLL13PA6NNM8 815 aa14.76□□□□□ -0.05
SHMT2-226ENST00000556825 E7EWF7 191 aa14.76□□□□□ -0.05
SHMT2-226ENST00000556825 NDC80O14777 642 aa14.76□□□□□ -0.05
SHMT2-226ENST00000556825 MAPK13O15264 365 aa14.76□□□□□ -0.05
SHMT2-226ENST00000556825 ENPP1P22413 925 aa14.76□□□□□ -0.05
SHMT2-226ENST00000556825 HNRNPH3P31942 346 aaKnown RBP14.76□□□□□ -0.05
SHMT2-226ENST00000556825 AFMP43652 599 aa14.76□□□□□ -0.05
SHMT2-226ENST00000556825 RPL5P46777 297 aaKnown RBP14.76□□□□□ -0.05
SHMT2-226ENST00000556825 BCAP31P51572 246 aa14.76□□□□□ -0.05
SHMT2-226ENST00000556825 RNASE9P60153 205 aaKnown RBP14.76□□□□□ -0.05
SHMT2-226ENST00000556825 CTDSPL2Q05D32 466 aa14.76□□□□□ -0.05
SHMT2-226ENST00000556825 KCNMA1Q12791 1236 aa14.76□□□□□ -0.05
SHMT2-226ENST00000556825 LRRC14Q15048 493 aa14.76□□□□□ -0.05
SHMT2-226ENST00000556825 ANKDD1AQ495B1 522 aa14.76□□□□□ -0.05
SHMT2-226ENST00000556825 RRAGBQ5VZM2 374 aa14.76□□□□□ -0.05
SHMT2-226ENST00000556825 PPP2R2DQ66LE6 453 aa14.76□□□□□ -0.05
SHMT2-226ENST00000556825 BTNL9Q6UXG8 535 aa14.76□□□□□ -0.05
SHMT2-226ENST00000556825 VASH1Q7L8A9 365 aaPredicted RBP14.76□□□□□ -0.05
SHMT2-226ENST00000556825 VPS36Q86VN1 386 aa14.76□□□□□ -0.05
SHMT2-226ENST00000556825 SIX5Q8N196 739 aa14.76□□□□□ -0.05
SHMT2-226ENST00000556825 PIP4K2CQ8TBX8 421 aa14.76□□□□□ -0.05
SHMT2-226ENST00000556825 PYROXD1Q8WU10 500 aa14.76□□□□□ -0.05
SHMT2-226ENST00000556825 FNBP1Q96RU3 617 aa14.76□□□□□ -0.05
SHMT2-226ENST00000556825 PABPC3Q9H361 631 aaKnown RBP14.76□□□□□ -0.05
SHMT2-226ENST00000556825 CUEDC2Q9H467 287 aa14.76□□□□□ -0.05
SHMT2-226ENST00000556825 ZMAT5Q9UDW3 170 aaKnown RBP14.76□□□□□ -0.05
SHMT2-226ENST00000556825 ANGEL1Q9UNK9 670 aaKnown RBP14.76□□□□□ -0.05
SHMT2-226ENST00000556825 CHKBQ9Y259 395 aa14.76□□□□□ -0.05
SHMT2-226ENST00000556825 TMA7Q9Y2S6 64 aaKnown RBP14.76□□□□□ -0.05
SHMT2-226ENST00000556825 LOC105371267A0A1B0GV96 52 aa14.75□□□□□ -0.05
SHMT2-226ENST00000556825 A0A1W2PQJ5 194 aa14.75□□□□□ -0.05
SHMT2-226ENST00000556825 PLEKP08567 350 aaPredicted RBP14.75□□□□□ -0.05
SHMT2-226ENST00000556825 PRCPP42785 496 aa14.75□□□□□ -0.05
SHMT2-226ENST00000556825 NR1D2Q14995 579 aa14.75□□□□□ -0.05
SHMT2-226ENST00000556825 KCTD21Q4G0X4 260 aa14.75□□□□□ -0.05
SHMT2-226ENST00000556825 MCMDC2Q4G0Z9 681 aa14.75□□□□□ -0.05
SHMT2-226ENST00000556825 MEI1Q5TIA1 1274 aa14.75□□□□□ -0.05
SHMT2-226ENST00000556825 DENND2CQ68D51 928 aa14.75□□□□□ -0.05
SHMT2-226ENST00000556825 NLRP9Q7RTR0 991 aa14.75□□□□□ -0.05
SHMT2-226ENST00000556825 IRF2BP1Q8IU81 584 aa14.75□□□□□ -0.05
SHMT2-226ENST00000556825 ARHGEF2Q92974 986 aaKnown RBP14.75□□□□□ -0.05
SHMT2-226ENST00000556825 EFHD2Q96C19 240 aaPredicted RBP14.75□□□□□ -0.05
SHMT2-226ENST00000556825 ALG1Q9BT22 464 aa14.75□□□□□ -0.05
SHMT2-226ENST00000556825 EMILIN3Q9NT22 766 aa14.75□□□□□ -0.05
SHMT2-226ENST00000556825 BUB1O43683 1085 aa14.74□□□□□ -0.05
SHMT2-226ENST00000556825 DKC1O60832 514 aaKnown RBP eCLIP14.74□□□□□ -0.05
SHMT2-226ENST00000556825 DCTN3O75935 186 aa14.74□□□□□ -0.05
SHMT2-226ENST00000556825 PHBP35232 272 aa14.74□□□□□ -0.05
SHMT2-226ENST00000556825 MXI1P50539 228 aa14.74□□□□□ -0.05
SHMT2-226ENST00000556825 WDR45BQ5MNZ6 344 aa14.74□□□□□ -0.05
SHMT2-226ENST00000556825 CYB5R4Q7L1T6 521 aa14.74□□□□□ -0.05
SHMT2-226ENST00000556825 CHST3Q7LGC8 479 aa14.74□□□□□ -0.05
SHMT2-226ENST00000556825 MCF2L2Q86YR7 1114 aa14.74□□□□□ -0.05
SHMT2-226ENST00000556825 CCDC125Q86Z20 511 aa14.74□□□□□ -0.05
SHMT2-226ENST00000556825 PRPF18Q99633 342 aaKnown RBP14.74□□□□□ -0.05
SHMT2-226ENST00000556825 ZMYND12Q9H0C1 365 aa14.74□□□□□ -0.05
SHMT2-226ENST00000556825 RBM38Q9H0Z9 239 aaKnown RBP14.74□□□□□ -0.05
SHMT2-226ENST00000556825 CNOT7Q9UIV1 285 aaKnown RBP14.74□□□□□ -0.05
SHMT2-226ENST00000556825 HPS5Q9UPZ3 1129 aa14.74□□□□□ -0.05
SHMT2-226ENST00000556825 DMTF1Q9Y222 760 aa14.74□□□□□ -0.05
SHMT2-226ENST00000556825 UTP11Q9Y3A2 253 aaKnown RBP14.74□□□□□ -0.05
SHMT2-226ENST00000556825 PNPLA7Q6ZV29 1317 aa14.74□□□□□ -0.05
SHMT2-226ENST00000556825 ARHGAP10A1A4S6 786 aa14.74□□□□□ -0.05
SHMT2-226ENST00000556825 TRMUO75648 421 aaKnown RBP14.74□□□□□ -0.05
SHMT2-226ENST00000556825 PARNO95453 639 aaKnown RBP14.74□□□□□ -0.05
SHMT2-226ENST00000556825 LDHCP07864 332 aa14.74□□□□□ -0.05
SHMT2-226ENST00000556825 EEF1GP26641 437 aaKnown RBP14.74□□□□□ -0.05
SHMT2-226ENST00000556825 EIF2B2P49770 351 aaKnown RBP14.74□□□□□ -0.05
SHMT2-226ENST00000556825 ZNF449Q6P9G9 518 aa14.74□□□□□ -0.05
SHMT2-226ENST00000556825 ANO5Q75V66 913 aa14.74□□□□□ -0.05
SHMT2-226ENST00000556825 FAM20CQ8IXL6 584 aa14.74□□□□□ -0.05
SHMT2-226ENST00000556825 ANKRD13CQ8N6S4 541 aa14.74□□□□□ -0.05
SHMT2-226ENST00000556825 MGARPQ8TDB4 240 aa14.74□□□□□ -0.05
SHMT2-226ENST00000556825 EAF2Q96CJ1 260 aaPredicted RBP14.74□□□□□ -0.05
SHMT2-226ENST00000556825 RTFDC1Q9BY42 306 aaPredicted RBP14.74□□□□□ -0.05
SHMT2-226ENST00000556825 CADM1Q9BY67 442 aaKnown RBP14.74□□□□□ -0.05
SHMT2-226ENST00000556825 CRNKL1Q9BZJ0 848 aaKnown RBP14.74□□□□□ -0.05
SHMT2-226ENST00000556825 CCDC8Q9H0W5 538 aaPredicted RBP14.74□□□□□ -0.05
SHMT2-226ENST00000556825 VTA1Q9NP79 307 aa14.74□□□□□ -0.05
SHMT2-226ENST00000556825 ARHGAP20Q9P2F6 1191 aa14.74□□□□□ -0.05
SHMT2-226ENST00000556825 DOLKQ9UPQ8 538 aa14.74□□□□□ -0.05
SHMT2-226ENST00000556825 MYH10P35580 1976 aa14.74□□□□□ -0.05
SHMT2-226ENST00000556825 NOTOA8MTQ0 251 aa14.73□□□□□ -0.05
SHMT2-226ENST00000556825 AP1G1O43747 822 aa14.73□□□□□ -0.05
SHMT2-226ENST00000556825 CASP1P29466 404 aa14.73□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms