RNA–Protein interactions for RNA: ENST00000556422.5

TMEM260-210, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 3,864 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-210ENST00000556422 RAB27AP51159 221 aa5.5□□□□□ -1.53
TMEM260-210ENST00000556422 PRELPP51888 382 aa5.5□□□□□ -1.53
TMEM260-210ENST00000556422 GIT2Q14161 759 aa5.5□□□□□ -1.53
TMEM260-210ENST00000556422 LBRQ14739 615 aaKnown RBP5.5□□□□□ -1.53
TMEM260-210ENST00000556422 VWA3BQ502W6 1294 aa5.5□□□□□ -1.53
TMEM260-210ENST00000556422 RNF187Q5TA31 235 aaPredicted RBP5.5□□□□□ -1.53
TMEM260-210ENST00000556422 GPBP1Q86WP2 473 aa5.5□□□□□ -1.53
TMEM260-210ENST00000556422 ARL6IP6Q8N6S5 226 aa5.5□□□□□ -1.53
TMEM260-210ENST00000556422 SLC16A10Q8TF71 515 aa5.5□□□□□ -1.53
TMEM260-210ENST00000556422 FAM20AQ96MK3 541 aa5.5□□□□□ -1.53
TMEM260-210ENST00000556422 UROC1Q96N76 676 aa5.5□□□□□ -1.53
TMEM260-210ENST00000556422 EIF3CQ99613 913 aaKnown RBP5.5□□□□□ -1.53
TMEM260-210ENST00000556422 LDHAL6BQ9BYZ2 381 aaPredicted RBP5.5□□□□□ -1.53
TMEM260-210ENST00000556422 NDST4Q9H3R1 872 aa5.5□□□□□ -1.53
TMEM260-210ENST00000556422 MYOZ2Q9NPC6 264 aa5.5□□□□□ -1.53
TMEM260-210ENST00000556422 ZKSCAN7Q9P0L1 754 aaPredicted RBP5.5□□□□□ -1.53
TMEM260-210ENST00000556422 EPN1Q9Y6I3 576 aaPredicted RBP5.5□□□□□ -1.53
TMEM260-210ENST00000556422 LOC285556D6RIA3 1793 aa5.5□□□□□ -1.53
TMEM260-210ENST00000556422 ASTN2O75129 1339 aaPredicted RBP5.5□□□□□ -1.53
TMEM260-210ENST00000556422 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP5.5□□□□□ -1.53
TMEM260-210ENST00000556422 RASA4O43374 803 aa5.5□□□□□ -1.53
TMEM260-210ENST00000556422 PSMD10O75832 226 aa5.5□□□□□ -1.53
TMEM260-210ENST00000556422 PLEKP08567 350 aaPredicted RBP5.5□□□□□ -1.53
TMEM260-210ENST00000556422 HNRNPH3P31942 346 aaKnown RBP5.5□□□□□ -1.53
TMEM260-210ENST00000556422 MTIF2P46199 727 aaKnown RBP5.5□□□□□ -1.53
TMEM260-210ENST00000556422 KCNMA1Q12791 1236 aa5.5□□□□□ -1.53
TMEM260-210ENST00000556422 MYBPC3Q14896 1274 aa5.5□□□□□ -1.53
TMEM260-210ENST00000556422 HSP90AA5PQ58FG0 334 aa5.5□□□□□ -1.53
TMEM260-210ENST00000556422 EGFLAMQ63HQ2 1017 aa5.5□□□□□ -1.53
TMEM260-210ENST00000556422 HAUS3Q68CZ6 603 aa5.5□□□□□ -1.53
TMEM260-210ENST00000556422 NCAPH2Q6IBW4 605 aa5.5□□□□□ -1.53
TMEM260-210ENST00000556422 NIM1KQ8IY84 436 aa5.5□□□□□ -1.53
TMEM260-210ENST00000556422 SYT2Q8N9I0 419 aaPredicted RBP5.5□□□□□ -1.53
TMEM260-210ENST00000556422 SPDL1Q96EA4 605 aa5.5□□□□□ -1.53
TMEM260-210ENST00000556422 CLMNQ96JQ2 1002 aa5.5□□□□□ -1.53
TMEM260-210ENST00000556422 HSD17B14Q9BPX1 270 aa5.5□□□□□ -1.53
TMEM260-210ENST00000556422 REEP2Q9BRK0 252 aa5.5□□□□□ -1.53
TMEM260-210ENST00000556422 NSRP1Q9H0G5 558 aaKnown RBP5.5□□□□□ -1.53
TMEM260-210ENST00000556422 EPC1Q9H2F5 836 aa5.5□□□□□ -1.53
TMEM260-210ENST00000556422 WDR90Q96KV7 1748 aa5.5□□□□□ -1.53
TMEM260-210ENST00000556422 PTPRFP10586 1907 aa5.5□□□□□ -1.53
TMEM260-210ENST00000556422 RSPH10B2B2RC85 870 aa5.49□□□□□ -1.53
TMEM260-210ENST00000556422 CFBP00751 764 aa5.49□□□□□ -1.53
TMEM260-210ENST00000556422 CYP1A2P05177 515 aa5.49□□□□□ -1.53
TMEM260-210ENST00000556422 SSBP05455 408 aaKnown RBP eCLIP5.49□□□□□ -1.53
TMEM260-210ENST00000556422 RSPH10BP0C881 870 aa5.49□□□□□ -1.53
TMEM260-210ENST00000556422 ALOX15P16050 662 aaPredicted RBP5.49□□□□□ -1.53
TMEM260-210ENST00000556422 CCNCP24863 283 aa5.49□□□□□ -1.53
TMEM260-210ENST00000556422 PTGER2P43116 358 aa5.49□□□□□ -1.53
TMEM260-210ENST00000556422 MARSP56192 900 aaKnown RBP5.49□□□□□ -1.53
TMEM260-210ENST00000556422 HSD17B7P56937 341 aa5.49□□□□□ -1.53
TMEM260-210ENST00000556422 CYP4A11Q02928 519 aa5.49□□□□□ -1.53
TMEM260-210ENST00000556422 PABPC4Q13310 644 aaKnown RBP eCLIP5.49□□□□□ -1.53
TMEM260-210ENST00000556422 RASA2Q15283 850 aa5.49□□□□□ -1.53
TMEM260-210ENST00000556422 MAN2A1Q16706 1144 aa5.49□□□□□ -1.53
TMEM260-210ENST00000556422 B3GNT9Q6UX72 402 aa5.49□□□□□ -1.53
TMEM260-210ENST00000556422 RSRC2Q7L4I2 434 aaKnown RBP5.49□□□□□ -1.53
TMEM260-210ENST00000556422 EPM2AIP1Q7L775 607 aaPredicted RBP5.49□□□□□ -1.53
TMEM260-210ENST00000556422 OTOP1Q7RTM1 612 aa5.49□□□□□ -1.53
TMEM260-210ENST00000556422 SLC35F6Q8N357 371 aa5.49□□□□□ -1.53
TMEM260-210ENST00000556422 BAP1Q92560 729 aa5.49□□□□□ -1.53
TMEM260-210ENST00000556422 BEGAINQ9BUH8 593 aa5.49□□□□□ -1.53
TMEM260-210ENST00000556422 FAM107BQ9H098 131 aa5.49□□□□□ -1.53
TMEM260-210ENST00000556422 DEFB129Q9H1M3 183 aa5.49□□□□□ -1.53
TMEM260-210ENST00000556422 PIF1Q9H611 641 aa5.49□□□□□ -1.53
TMEM260-210ENST00000556422 TUBA8Q9NY65 449 aaPredicted RBP5.49□□□□□ -1.53
TMEM260-210ENST00000556422 COL20A1Q9P218 1284 aa5.49□□□□□ -1.53
TMEM260-210ENST00000556422 WRAP73Q9P2S5 460 aaPredicted RBP5.49□□□□□ -1.53
TMEM260-210ENST00000556422 GTF3C4Q9UKN8 822 aa5.49□□□□□ -1.53
TMEM260-210ENST00000556422 PLAGL2Q9UPG8 496 aa5.49□□□□□ -1.53
TMEM260-210ENST00000556422 SNX5Q9Y5X3 404 aa5.49□□□□□ -1.53
TMEM260-210ENST00000556422 DICER1Q9UPY3 1922 aaKnown RBP5.49□□□□□ -1.53
TMEM260-210ENST00000556422 ARID2Q68CP9 1835 aa5.49□□□□□ -1.53
TMEM260-210ENST00000556422 EFCAB8A8MWE9 144 aa5.49□□□□□ -1.53
TMEM260-210ENST00000556422 H0YC42 278 aa5.49□□□□□ -1.53
TMEM260-210ENST00000556422 NDUFAB1O14561 156 aa5.49□□□□□ -1.53
TMEM260-210ENST00000556422 ZBTB39O15060 712 aa5.49□□□□□ -1.53
TMEM260-210ENST00000556422 PPP1R12BO60237 982 aaPredicted RBP5.49□□□□□ -1.53
TMEM260-210ENST00000556422 OPA1O60313 960 aa5.49□□□□□ -1.53
TMEM260-210ENST00000556422 INMTO95050 263 aa5.49□□□□□ -1.53
TMEM260-210ENST00000556422 RTN3O95197 1032 aaPredicted RBP5.49□□□□□ -1.53
TMEM260-210ENST00000556422 HOXA7P31268 230 aaPredicted RBP5.49□□□□□ -1.53
TMEM260-210ENST00000556422 LMAN1P49257 510 aa5.49□□□□□ -1.53
TMEM260-210ENST00000556422 PSMD7P51665 324 aa5.49□□□□□ -1.53
TMEM260-210ENST00000556422 TUBA1BP68363 451 aa5.49□□□□□ -1.53
TMEM260-210ENST00000556422 UBXN2AP68543 259 aa5.49□□□□□ -1.53
TMEM260-210ENST00000556422 AMPD2Q01433 879 aa5.49□□□□□ -1.53
TMEM260-210ENST00000556422 FAPQ12884 760 aa5.49□□□□□ -1.53
TMEM260-210ENST00000556422 INAQ16352 499 aa5.49□□□□□ -1.53
TMEM260-210ENST00000556422 SMUG1Q53HV7 270 aa5.49□□□□□ -1.53
TMEM260-210ENST00000556422 TUBA1AQ71U36 451 aa5.49□□□□□ -1.53
TMEM260-210ENST00000556422 ZNF397Q8NF99 534 aaPredicted RBP5.49□□□□□ -1.53
TMEM260-210ENST00000556422 ERMNQ8TAM6 284 aa5.49□□□□□ -1.53
TMEM260-210ENST00000556422 EXOC4Q96A65 974 aa5.49□□□□□ -1.53
TMEM260-210ENST00000556422 PAWRQ96IZ0 340 aaKnown RBP5.49□□□□□ -1.53
TMEM260-210ENST00000556422 RUSC1Q9BVN2 902 aa5.49□□□□□ -1.53
TMEM260-210ENST00000556422 LACRTQ9GZZ8 138 aa5.49□□□□□ -1.53
TMEM260-210ENST00000556422 SEPT11Q9NVA2 429 aaKnown RBP5.49□□□□□ -1.53
TMEM260-210ENST00000556422 PIM2Q9P1W9 311 aa5.49□□□□□ -1.53
TMEM260-210ENST00000556422 ARHGAP20Q9P2F6 1191 aa5.49□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms