RNA–Protein interactions for RNA: ENST00000556380.3

SRP54-210, Transcript of signal recognition particle 54, humanhuman

TSL 3

Gene SRP54, Length 600 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-210ENST00000556380 INO80BQ9C086 356 aaPredicted RBP10.7□□□□□ -0.7
SRP54-210ENST00000556380 NKX2-4Q9H2Z4 354 aa10.7□□□□□ -0.7
SRP54-210ENST00000556380 RC3H2Q9HBD1 1191 aaKnown RBP10.7□□□□□ -0.7
SRP54-210ENST00000556380 CHST12Q9NRB3 414 aa10.7□□□□□ -0.7
SRP54-210ENST00000556380 DAXXQ9UER7 740 aaPredicted RBP10.7□□□□□ -0.7
SRP54-210ENST00000556380 MSRAQ9UJ68 235 aa10.7□□□□□ -0.7
SRP54-210ENST00000556380 CDH23Q9H251 3354 aa10.7□□□□□ -0.7
SRP54-210ENST00000556380 MICAL3Q7RTP6 2002 aa10.7□□□□□ -0.7
SRP54-210ENST00000556380 MYO9BQ13459 2157 aa10.69□□□□□ -0.7
SRP54-210ENST00000556380 PTPRSQ13332 1948 aa10.69□□□□□ -0.7
SRP54-210ENST00000556380 A0A087X0B3 334 aa10.69□□□□□ -0.7
SRP54-210ENST00000556380 LCHNA4D1U4 455 aa10.69□□□□□ -0.7
SRP54-210ENST00000556380 TLL1O43897 1013 aa10.69□□□□□ -0.7
SRP54-210ENST00000556380 SARSP49591 514 aaKnown RBP10.69□□□□□ -0.7
SRP54-210ENST00000556380 TAP1Q03518 808 aa10.69□□□□□ -0.7
SRP54-210ENST00000556380 MBTD1Q05BQ5 628 aa10.69□□□□□ -0.7
SRP54-210ENST00000556380 TFDP1Q14186 410 aa10.69□□□□□ -0.7
SRP54-210ENST00000556380 NAALADL2Q58DX5 795 aa10.69□□□□□ -0.7
SRP54-210ENST00000556380 CDCA2Q69YH5 1023 aaPredicted RBP10.69□□□□□ -0.7
SRP54-210ENST00000556380 FAM117BQ6P1L5 589 aa10.69□□□□□ -0.7
SRP54-210ENST00000556380 SLC24A5Q71RS6 500 aa10.69□□□□□ -0.7
SRP54-210ENST00000556380 Q7L0L9 218 aa10.69□□□□□ -0.7
SRP54-210ENST00000556380 NPAS4Q8IUM7 802 aa10.69□□□□□ -0.7
SRP54-210ENST00000556380 DEFB123Q8N688 67 aa10.69□□□□□ -0.7
SRP54-210ENST00000556380 RAD54LQ92698 747 aa10.69□□□□□ -0.7
SRP54-210ENST00000556380 KIFAP3Q92845 792 aa10.69□□□□□ -0.7
SRP54-210ENST00000556380 ZNF689Q96CS4 500 aaPredicted RBP10.69□□□□□ -0.7
SRP54-210ENST00000556380 CALML4Q96GE6 196 aa10.69□□□□□ -0.7
SRP54-210ENST00000556380 SCLT1Q96NL6 688 aa10.69□□□□□ -0.7
SRP54-210ENST00000556380 ZNF576Q9H609 170 aa10.69□□□□□ -0.7
SRP54-210ENST00000556380 C1orf112Q9NSG2 853 aa10.69□□□□□ -0.7
SRP54-210ENST00000556380 MTMR10Q9NXD2 777 aa10.69□□□□□ -0.7
SRP54-210ENST00000556380 CFAP45Q9UL16 551 aa10.69□□□□□ -0.7
SRP54-210ENST00000556380 INSL6Q9Y581 213 aa10.69□□□□□ -0.7
SRP54-210ENST00000556380 ARID2Q68CP9 1835 aa10.69□□□□□ -0.7
SRP54-210ENST00000556380 LOXHD1Q8IVV2 1947 aa10.68□□□□□ -0.7
SRP54-210ENST00000556380 A0A0U1RQF3 1178 aa10.68□□□□□ -0.7
SRP54-210ENST00000556380 CUTAO60888 179 aa10.68□□□□□ -0.7
SRP54-210ENST00000556380 DGKIO75912 1065 aa10.68□□□□□ -0.7
SRP54-210ENST00000556380 UPP2O95045 317 aa10.68□□□□□ -0.7
SRP54-210ENST00000556380 CA3P07451 260 aa10.68□□□□□ -0.7
SRP54-210ENST00000556380 LINC00271P0C7V0 271 aa10.68□□□□□ -0.7
SRP54-210ENST00000556380 SFPQP23246 707 aaKnown RBP eCLIP10.68□□□□□ -0.7
SRP54-210ENST00000556380 PHKA2P46019 1235 aa10.68□□□□□ -0.7
SRP54-210ENST00000556380 PCBP1Q15365 356 aaKnown RBP eCLIP10.68□□□□□ -0.7
SRP54-210ENST00000556380 SHC4Q6S5L8 630 aa10.68□□□□□ -0.7
SRP54-210ENST00000556380 CATSPER4Q7RTX7 472 aa10.68□□□□□ -0.7
SRP54-210ENST00000556380 SPRED2Q7Z698 418 aa10.68□□□□□ -0.7
SRP54-210ENST00000556380 ZNF598Q86UK7 904 aaKnown RBP10.68□□□□□ -0.7
SRP54-210ENST00000556380 KCNG4Q8TDN1 519 aa10.68□□□□□ -0.7
SRP54-210ENST00000556380 LEO1Q8WVC0 666 aaPredicted RBP10.68□□□□□ -0.7
SRP54-210ENST00000556380 CDK5RAP3Q96JB5 506 aa10.68□□□□□ -0.7
SRP54-210ENST00000556380 TIPINQ9BVW5 301 aa10.68□□□□□ -0.7
SRP54-210ENST00000556380 FZD8Q9H461 694 aa10.68□□□□□ -0.7
SRP54-210ENST00000556380 ELAC1Q9H777 363 aaKnown RBP10.68□□□□□ -0.7
SRP54-210ENST00000556380 AGPAT5Q9NUQ2 364 aa10.68□□□□□ -0.7
SRP54-210ENST00000556380 RNF19AQ9NV58 838 aa10.68□□□□□ -0.7
SRP54-210ENST00000556380 KCND2Q9NZV8 630 aa10.68□□□□□ -0.7
SRP54-210ENST00000556380 PCDHA7Q9UN72 937 aa10.68□□□□□ -0.7
SRP54-210ENST00000556380 COL4A6Q14031 1691 aa10.67□□□□□ -0.7
SRP54-210ENST00000556380 ADGRA3Q8IWK6 1321 aa10.67□□□□□ -0.7
SRP54-210ENST00000556380 NPHP3-ACAD11A0A0J9YXS1 232 aa10.67□□□□□ -0.7
SRP54-210ENST00000556380 DENND3A2RUS2 1198 aa10.67□□□□□ -0.7
SRP54-210ENST00000556380 LINC01553A4QN01 128 aa10.67□□□□□ -0.7
SRP54-210ENST00000556380 TSPAN1O60635 241 aa10.67□□□□□ -0.7
SRP54-210ENST00000556380 ZNF623O75123 536 aa10.67□□□□□ -0.7
SRP54-210ENST00000556380 HIP1RO75146 1068 aa10.67□□□□□ -0.7
SRP54-210ENST00000556380 ZSCAN20P17040 1043 aaPredicted RBP10.67□□□□□ -0.7
SRP54-210ENST00000556380 ATF7P17544 494 aaPredicted RBP10.67□□□□□ -0.7
SRP54-210ENST00000556380 NAMPTP43490 491 aa10.67□□□□□ -0.7
SRP54-210ENST00000556380 NUCB2P80303 420 aa10.67□□□□□ -0.7
SRP54-210ENST00000556380 MCM6Q14566 821 aa10.67□□□□□ -0.7
SRP54-210ENST00000556380 GRIN2CQ14957 1233 aa10.67□□□□□ -0.7
SRP54-210ENST00000556380 FAM187BQ17R55 369 aa10.67□□□□□ -0.7
SRP54-210ENST00000556380 UBXN11Q5T124 520 aa10.67□□□□□ -0.7
SRP54-210ENST00000556380 ZNF697Q5TEC3 545 aa10.67□□□□□ -0.7
SRP54-210ENST00000556380 RRAGBQ5VZM2 374 aa10.67□□□□□ -0.7
SRP54-210ENST00000556380 ECHDC2Q86YB7 292 aa10.67□□□□□ -0.7
SRP54-210ENST00000556380 GUCD1Q96NT3 240 aa10.67□□□□□ -0.7
SRP54-210ENST00000556380 NTPCRQ9BSD7 190 aaKnown RBP10.67□□□□□ -0.7
SRP54-210ENST00000556380 PANK2Q9BZ23 570 aa10.67□□□□□ -0.7
SRP54-210ENST00000556380 CCDC113Q9H0I3 377 aa10.67□□□□□ -0.7
SRP54-210ENST00000556380 SLC28A3Q9HAS3 691 aa10.67□□□□□ -0.7
SRP54-210ENST00000556380 TMEM161AQ9NX61 479 aa10.67□□□□□ -0.7
SRP54-210ENST00000556380 STK17AQ9UEE5 414 aa10.67□□□□□ -0.7
SRP54-210ENST00000556380 CCDC39Q9UFE4 941 aa10.67□□□□□ -0.7
SRP54-210ENST00000556380 LRRIQ4A6NIV6 560 aa10.66□□□□□ -0.7
SRP54-210ENST00000556380 SFI1A8K8P3 1242 aa10.66□□□□□ -0.7
SRP54-210ENST00000556380 INO80B-WBP1J3KQ70 363 aa10.66□□□□□ -0.7
SRP54-210ENST00000556380 RNF40O75150 1001 aa10.66□□□□□ -0.7
SRP54-210ENST00000556380 EOMESO95936 686 aa10.66□□□□□ -0.7
SRP54-210ENST00000556380 EDN1P05305 212 aa10.66□□□□□ -0.7
SRP54-210ENST00000556380 SSBP05455 408 aaKnown RBP eCLIP10.66□□□□□ -0.7
SRP54-210ENST00000556380 STAG3L1P0CL83 205 aa10.66□□□□□ -0.7
SRP54-210ENST00000556380 AXLP30530 894 aa10.66□□□□□ -0.7
SRP54-210ENST00000556380 NPTX2P47972 431 aa10.66□□□□□ -0.7
SRP54-210ENST00000556380 GATMP50440 423 aa10.66□□□□□ -0.7
SRP54-210ENST00000556380 ZNF131P52739 623 aa10.66□□□□□ -0.7
SRP54-210ENST00000556380 ERVK-21P61565 698 aa10.66□□□□□ -0.7
SRP54-210ENST00000556380 GIT2Q14161 759 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms