RNA–Protein interactions for RNA: ENST00000555953.1

SCFD1-217, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 497 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-217ENST00000555953 CASRP41180 1078 aa5.98□□□□□ -1.45
SCFD1-217ENST00000555953 ZBTB41Q5SVQ8 909 aa5.98□□□□□ -1.45
SCFD1-217ENST00000555953 KIF18BQ86Y91 864 aa5.98□□□□□ -1.45
SCFD1-217ENST00000555953 CPT1CQ8TCG5 803 aa5.98□□□□□ -1.45
SCFD1-217ENST00000555953 PROKR1Q8TCW9 393 aa5.98□□□□□ -1.45
SCFD1-217ENST00000555953 ZNF496Q96IT1 587 aaPredicted RBP5.98□□□□□ -1.45
SCFD1-217ENST00000555953 CPPED1Q9BRF8 314 aaPredicted RBP5.98□□□□□ -1.45
SCFD1-217ENST00000555953 FDXACB1Q9BRP7 624 aaPredicted RBP5.98□□□□□ -1.45
SCFD1-217ENST00000555953 CPEB1Q9BZB8 566 aaKnown RBP5.98□□□□□ -1.45
SCFD1-217ENST00000555953 MTFR1LQ9H019 292 aa5.98□□□□□ -1.45
SCFD1-217ENST00000555953 IFT57Q9NWB7 429 aa5.98□□□□□ -1.45
SCFD1-217ENST00000555953 THG1LQ9NWX6 298 aaKnown RBP5.98□□□□□ -1.45
SCFD1-217ENST00000555953 GCP02774 474 aa5.97□□□□□ -1.45
SCFD1-217ENST00000555953 ITGB1P05556 798 aa5.97□□□□□ -1.45
SCFD1-217ENST00000555953 PFKMP08237 780 aa5.97□□□□□ -1.45
SCFD1-217ENST00000555953 BMP5P22003 454 aa5.97□□□□□ -1.45
SCFD1-217ENST00000555953 NEK4P51957 841 aa5.97□□□□□ -1.45
SCFD1-217ENST00000555953 C21orf62-AS1Q17RA5 79 aa5.97□□□□□ -1.45
SCFD1-217ENST00000555953 LRRC55Q6ZSA7 311 aa5.97□□□□□ -1.45
SCFD1-217ENST00000555953 CDYL2Q8N8U2 506 aa5.97□□□□□ -1.45
SCFD1-217ENST00000555953 GPR150Q8NGU9 434 aa5.97□□□□□ -1.45
SCFD1-217ENST00000555953 ZNF768Q9H5H4 540 aaKnown RBP5.97□□□□□ -1.45
SCFD1-217ENST00000555953 MSRAQ9UJ68 235 aa5.97□□□□□ -1.45
SCFD1-217ENST00000555953 CD2APQ9Y5K6 639 aa5.97□□□□□ -1.45
SCFD1-217ENST00000555953 HS3ST4Q9Y661 456 aa5.97□□□□□ -1.45
SCFD1-217ENST00000555953 LCHNA4D1U4 455 aa5.96□□□□□ -1.46
SCFD1-217ENST00000555953 TRIM24O15164 1050 aa5.96□□□□□ -1.46
SCFD1-217ENST00000555953 SEC24DO94855 1032 aaPredicted RBP5.96□□□□□ -1.46
SCFD1-217ENST00000555953 SCAF4O95104 1147 aaKnown RBP5.96□□□□□ -1.46
SCFD1-217ENST00000555953 ABHD16AO95870 558 aa5.96□□□□□ -1.46
SCFD1-217ENST00000555953 POU3F2P20265 443 aaPredicted RBP5.96□□□□□ -1.46
SCFD1-217ENST00000555953 LY6G5CQ5SRR4 150 aa5.96□□□□□ -1.46
SCFD1-217ENST00000555953 ESPNLQ6ZVH7 1005 aa5.96□□□□□ -1.46
SCFD1-217ENST00000555953 MSL3Q8N5Y2 521 aaKnown RBP5.96□□□□□ -1.46
SCFD1-217ENST00000555953 OR52N2Q8NGI0 321 aa5.96□□□□□ -1.46
SCFD1-217ENST00000555953 OR5M3Q8NGP4 307 aa5.96□□□□□ -1.46
SCFD1-217ENST00000555953 FERMT2Q96AC1 680 aa5.96□□□□□ -1.46
SCFD1-217ENST00000555953 LSM14BQ9BX40 385 aaKnown RBP5.96□□□□□ -1.46
SCFD1-217ENST00000555953 EPC1Q9H2F5 836 aa5.96□□□□□ -1.46
SCFD1-217ENST00000555953 MS4A5Q9H3V2 200 aa5.96□□□□□ -1.46
SCFD1-217ENST00000555953 USP18Q9UMW8 372 aa5.96□□□□□ -1.46
SCFD1-217ENST00000555953 ST20-MTHFSA0A0A6YYL1 179 aa5.95□□□□□ -1.46
SCFD1-217ENST00000555953 GRID2IPA4D2P6 1211 aa5.95□□□□□ -1.46
SCFD1-217ENST00000555953 AHRRA9YTQ3 701 aa5.95□□□□□ -1.46
SCFD1-217ENST00000555953 DNAJC6O75061 913 aa5.95□□□□□ -1.46
SCFD1-217ENST00000555953 MRPL49Q13405 166 aaKnown RBP5.95□□□□□ -1.46
SCFD1-217ENST00000555953 CCDC144BQ3MJ40 725 aa5.95□□□□□ -1.46
SCFD1-217ENST00000555953 KCNV1Q6PIU1 500 aa5.95□□□□□ -1.46
SCFD1-217ENST00000555953 PASD1Q8IV76 773 aa5.95□□□□□ -1.46
SCFD1-217ENST00000555953 SYNPOQ8N3V7 929 aa5.95□□□□□ -1.46
SCFD1-217ENST00000555953 RNPC3Q96LT9 517 aaKnown RBP5.95□□□□□ -1.46
SCFD1-217ENST00000555953 PDCD2LQ9BRP1 358 aa5.95□□□□□ -1.46
SCFD1-217ENST00000555953 KCNH6Q9H252 994 aa5.95□□□□□ -1.46
SCFD1-217ENST00000555953 USP36Q9P275 1121 aaKnown RBP5.95□□□□□ -1.46
SCFD1-217ENST00000555953 WDR3Q9UNX4 943 aaKnown RBP eCLIP5.95□□□□□ -1.46
SCFD1-217ENST00000555953 RECQL4O94761 1208 aa5.94□□□□□ -1.46
SCFD1-217ENST00000555953 GYPEP15421 78 aa5.94□□□□□ -1.46
SCFD1-217ENST00000555953 ADRA1BP35368 520 aa5.94□□□□□ -1.46
SCFD1-217ENST00000555953 FAM189BP81408 668 aa5.94□□□□□ -1.46
SCFD1-217ENST00000555953 PTPAQ15257 358 aa5.94□□□□□ -1.46
SCFD1-217ENST00000555953 PCBP1Q15365 356 aaKnown RBP eCLIP5.94□□□□□ -1.46
SCFD1-217ENST00000555953 TCEA2Q15560 299 aa5.94□□□□□ -1.46
SCFD1-217ENST00000555953 VPS72Q15906 364 aa5.94□□□□□ -1.46
SCFD1-217ENST00000555953 TKFCQ3LXA3 575 aa5.94□□□□□ -1.46
SCFD1-217ENST00000555953 PLEKHG4Q58EX7 1191 aa5.94□□□□□ -1.46
SCFD1-217ENST00000555953 METTL24Q5JXM2 366 aa5.94□□□□□ -1.46
SCFD1-217ENST00000555953 TAS1R1Q7RTX1 841 aa5.94□□□□□ -1.46
SCFD1-217ENST00000555953 LRRTM3Q86VH5 581 aa5.94□□□□□ -1.46
SCFD1-217ENST00000555953 GAB3Q8WWW8 586 aa5.94□□□□□ -1.46
SCFD1-217ENST00000555953 IL17RAQ96F46 866 aa5.94□□□□□ -1.46
SCFD1-217ENST00000555953 PIF1Q9H611 641 aa5.94□□□□□ -1.46
SCFD1-217ENST00000555953 EIF2B4Q9UI10 523 aaKnown RBP5.94□□□□□ -1.46
SCFD1-217ENST00000555953 A0A1W2PR48 441 aa5.93□□□□□ -1.46
SCFD1-217ENST00000555953 PRSS38A1L453 326 aa5.93□□□□□ -1.46
SCFD1-217ENST00000555953 APOBEC3AP31941 199 aaPredicted RBP5.93□□□□□ -1.46
SCFD1-217ENST00000555953 KPNA1P52294 538 aaPredicted RBP5.93□□□□□ -1.46
SCFD1-217ENST00000555953 WNT3AP56704 352 aa5.93□□□□□ -1.46
SCFD1-217ENST00000555953 TIGD2Q4W5G0 525 aa5.93□□□□□ -1.46
SCFD1-217ENST00000555953 GPR158Q5T848 1215 aa5.93□□□□□ -1.46
SCFD1-217ENST00000555953 DPY19L2P1Q6NXN4 242 aa5.93□□□□□ -1.46
SCFD1-217ENST00000555953 CNNM4Q6P4Q7 775 aa5.93□□□□□ -1.46
SCFD1-217ENST00000555953 FAM83AQ86UY5 434 aa5.93□□□□□ -1.46
SCFD1-217ENST00000555953 GLB1L3Q8NCI6 653 aaPredicted RBP5.93□□□□□ -1.46
SCFD1-217ENST00000555953 SMC1BQ8NDV3 1235 aa5.93□□□□□ -1.46
SCFD1-217ENST00000555953 FAM193BQ96PV7 902 aaPredicted RBP5.93□□□□□ -1.46
SCFD1-217ENST00000555953 NDC1Q9BTX1 674 aa5.93□□□□□ -1.46
SCFD1-217ENST00000555953 PACSIN3Q9UKS6 424 aa5.93□□□□□ -1.46
SCFD1-217ENST00000555953 CENPVL1A0A0U1RR11 272 aa5.92□□□□□ -1.46
SCFD1-217ENST00000555953 PPFIA4O75335 1185 aa5.92□□□□□ -1.46
SCFD1-217ENST00000555953 RHOBTB3O94955 611 aa5.92□□□□□ -1.46
SCFD1-217ENST00000555953 LMNAP02545 664 aaKnown RBP5.92□□□□□ -1.46
SCFD1-217ENST00000555953 GZMKP49863 264 aa5.92□□□□□ -1.46
SCFD1-217ENST00000555953 PHC1P78364 1004 aa5.92□□□□□ -1.46
SCFD1-217ENST00000555953 DUSP2Q05923 314 aa5.92□□□□□ -1.46
SCFD1-217ENST00000555953 MGAT5Q09328 741 aa5.92□□□□□ -1.46
SCFD1-217ENST00000555953 SEPT7Q16181 437 aaKnown RBP5.92□□□□□ -1.46
SCFD1-217ENST00000555953 DOK3Q7L591 496 aa5.92□□□□□ -1.46
SCFD1-217ENST00000555953 XYLT1Q86Y38 959 aa5.92□□□□□ -1.46
SCFD1-217ENST00000555953 ZNF610Q8N9Z0 462 aa5.92□□□□□ -1.46
SCFD1-217ENST00000555953 GPR101Q96P66 508 aaPredicted RBP5.92□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms