RNA–Protein interactions for RNA: ENST00000555543.1

VTI1B-205, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 718 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-205ENST00000555543 DAW1Q8N136 415 aa22.69■■□□□ 1.22
VTI1B-205ENST00000555543 ZNF558Q96NG5 402 aa22.69■■□□□ 1.22
VTI1B-205ENST00000555543 KIFC3Q9BVG8 833 aa22.69■■□□□ 1.22
VTI1B-205ENST00000555543 MRPL9Q9BYD2 267 aaKnown RBP22.69■■□□□ 1.22
VTI1B-205ENST00000555543 CSRNP2Q9H175 543 aa22.69■■□□□ 1.22
VTI1B-205ENST00000555543 UBE2ZQ9H832 354 aaPredicted RBP22.69■■□□□ 1.22
VTI1B-205ENST00000555543 IPPQ9Y573 584 aa22.69■■□□□ 1.22
VTI1B-205ENST00000555543 TTLL13PA6NNM8 815 aa22.68■■□□□ 1.22
VTI1B-205ENST00000555543 B4GALT3O60512 393 aa22.68■■□□□ 1.22
VTI1B-205ENST00000555543 EDN1P05305 212 aa22.68■■□□□ 1.22
VTI1B-205ENST00000555543 NCLP19338 710 aaKnown RBP22.68■■□□□ 1.22
VTI1B-205ENST00000555543 NAMPTP43490 491 aa22.68■■□□□ 1.22
VTI1B-205ENST00000555543 PTPAQ15257 358 aa22.68■■□□□ 1.22
VTI1B-205ENST00000555543 TMEM119Q4V9L6 283 aa22.68■■□□□ 1.22
VTI1B-205ENST00000555543 NOMO2Q5JPE7 1267 aa22.68■■□□□ 1.22
VTI1B-205ENST00000555543 GLB1LQ6UWU2 654 aa22.68■■□□□ 1.22
VTI1B-205ENST00000555543 PPP4R3CPQ6ZMV5 832 aa22.68■■□□□ 1.22
VTI1B-205ENST00000555543 CABP7Q86V35 215 aa22.68■■□□□ 1.22
VTI1B-205ENST00000555543 HSCBQ8IWL3 235 aa22.68■■□□□ 1.22
VTI1B-205ENST00000555543 ZBTB8OSQ8IWT0 167 aa22.68■■□□□ 1.22
VTI1B-205ENST00000555543 LRRC15Q8TF66 581 aa22.68■■□□□ 1.22
VTI1B-205ENST00000555543 PGBD4Q96DM1 585 aa22.68■■□□□ 1.22
VTI1B-205ENST00000555543 CCDC51Q96ER9 411 aa22.68■■□□□ 1.22
VTI1B-205ENST00000555543 CCDC113Q9H0I3 377 aa22.68■■□□□ 1.22
VTI1B-205ENST00000555543 RNF39Q9H2S5 420 aa22.68■■□□□ 1.22
VTI1B-205ENST00000555543 FZD8Q9H461 694 aa22.68■■□□□ 1.22
VTI1B-205ENST00000555543 TBC1D13Q9NVG8 400 aa22.68■■□□□ 1.22
VTI1B-205ENST00000555543 HES2Q9Y543 173 aa22.68■■□□□ 1.22
VTI1B-205ENST00000555543 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP22.67■■□□□ 1.22
VTI1B-205ENST00000555543 STX6O43752 255 aa22.67■■□□□ 1.22
VTI1B-205ENST00000555543 GTF2F1P35269 517 aaKnown RBP eCLIP22.67■■□□□ 1.22
VTI1B-205ENST00000555543 HYAL1Q12794 435 aa22.67■■□□□ 1.22
VTI1B-205ENST00000555543 MAPK7Q13164 816 aa22.67■■□□□ 1.22
VTI1B-205ENST00000555543 COL19A1Q14993 1142 aa22.67■■□□□ 1.22
VTI1B-205ENST00000555543 CSPP1Q1MSJ5 1256 aa22.67■■□□□ 1.22
VTI1B-205ENST00000555543 RINT1Q6NUQ1 792 aa22.67■■□□□ 1.22
VTI1B-205ENST00000555543 C1orf186Q6ZWK4 172 aa22.67■■□□□ 1.22
VTI1B-205ENST00000555543 ADGRD2Q7Z7M1 963 aa22.67■■□□□ 1.22
VTI1B-205ENST00000555543 KIFAP3Q92845 792 aa22.67■■□□□ 1.22
VTI1B-205ENST00000555543 AK8Q96MA6 479 aa22.67■■□□□ 1.22
VTI1B-205ENST00000555543 RSAD1Q9HA92 442 aa22.67■■□□□ 1.22
VTI1B-205ENST00000555543 PRMT7Q9NVM4 692 aaPredicted RBP22.67■■□□□ 1.22
VTI1B-205ENST00000555543 USP20Q9Y2K6 914 aa22.67■■□□□ 1.22
VTI1B-205ENST00000555543 CNTNAP2Q9UHC6 1331 aa22.66■■□□□ 1.22
VTI1B-205ENST00000555543 HIP1RO75146 1068 aa22.66■■□□□ 1.22
VTI1B-205ENST00000555543 PLCB3Q01970 1234 aa22.66■■□□□ 1.22
VTI1B-205ENST00000555543 UBE3AQ05086 875 aa22.66■■□□□ 1.22
VTI1B-205ENST00000555543 NCBP1Q09161 790 aaKnown RBP22.66■■□□□ 1.22
VTI1B-205ENST00000555543 PPP2R5AQ15172 486 aa22.66■■□□□ 1.22
VTI1B-205ENST00000555543 FAM187BQ17R55 369 aa22.66■■□□□ 1.22
VTI1B-205ENST00000555543 SLC39A11Q8N1S5 342 aa22.66■■□□□ 1.22
VTI1B-205ENST00000555543 DEPTORQ8TB45 409 aa22.66■■□□□ 1.22
VTI1B-205ENST00000555543 PRIMPOLQ96LW4 560 aa22.66■■□□□ 1.22
VTI1B-205ENST00000555543 NT5C3AQ9H0P0 336 aa22.66■■□□□ 1.22
VTI1B-205ENST00000555543 C2orf40Q9H1Z8 148 aa22.66■■□□□ 1.22
VTI1B-205ENST00000555543 NXF3Q9H4D5 531 aaKnown RBP22.66■■□□□ 1.22
VTI1B-205ENST00000555543 MUC3AQ02505 3323 aa22.65■■□□□ 1.22
VTI1B-205ENST00000555543 A0A1B0GUA9 196 aa22.65■■□□□ 1.22
VTI1B-205ENST00000555543 NT5C1B-RDH14C9J2C7 533 aa22.65■■□□□ 1.22
VTI1B-205ENST00000555543 ZC3H11AO75152 810 aaKnown RBP eCLIP22.65■■□□□ 1.22
VTI1B-205ENST00000555543 NPTXRO95502 500 aa22.65■■□□□ 1.22
VTI1B-205ENST00000555543 SSBP05455 408 aaKnown RBP eCLIP22.65■■□□□ 1.22
VTI1B-205ENST00000555543 PRKCBP05771 671 aa22.65■■□□□ 1.22
VTI1B-205ENST00000555543 BMP1P13497 986 aa22.65■■□□□ 1.22
VTI1B-205ENST00000555543 KCNA5P22460 613 aa22.65■■□□□ 1.22
VTI1B-205ENST00000555543 BCAR1P56945 870 aa22.65■■□□□ 1.22
VTI1B-205ENST00000555543 ERVFC1P60507 584 aa22.65■■□□□ 1.22
VTI1B-205ENST00000555543 AAK1Q2M2I8 961 aa22.65■■□□□ 1.22
VTI1B-205ENST00000555543 SLC27A1Q6PCB7 646 aa22.65■■□□□ 1.22
VTI1B-205ENST00000555543 TMEM173Q86WV6 379 aaPredicted RBP22.65■■□□□ 1.22
VTI1B-205ENST00000555543 ZNF280BQ86YH2 543 aa22.65■■□□□ 1.22
VTI1B-205ENST00000555543 RSPH1Q8WYR4 309 aa22.65■■□□□ 1.22
VTI1B-205ENST00000555543 CDK5RAP3Q96JB5 506 aa22.65■■□□□ 1.22
VTI1B-205ENST00000555543 IFT74Q96LB3 600 aa22.65■■□□□ 1.22
VTI1B-205ENST00000555543 NRDE2Q9H7Z3 1164 aa22.65■■□□□ 1.22
VTI1B-205ENST00000555543 TLR9Q9NR96 1032 aa22.65■■□□□ 1.22
VTI1B-205ENST00000555543 DNAJB4Q9UDY4 337 aa22.65■■□□□ 1.22
VTI1B-205ENST00000555543 ITGA4P13612 1032 aa22.64■■□□□ 1.21
VTI1B-205ENST00000555543 LIG1P18858 919 aa22.64■■□□□ 1.21
VTI1B-205ENST00000555543 MARCKSP29966 332 aaPredicted RBP22.64■■□□□ 1.21
VTI1B-205ENST00000555543 PPM1AP35813 382 aa22.64■■□□□ 1.21
VTI1B-205ENST00000555543 LONP1P36776 959 aaKnown RBP22.64■■□□□ 1.21
VTI1B-205ENST00000555543 SLC12A3P55017 1021 aa22.64■■□□□ 1.21
VTI1B-205ENST00000555543 CEBPZQ03701 1054 aaKnown RBP22.64■■□□□ 1.21
VTI1B-205ENST00000555543 RAD51AP2Q09MP3 1159 aa22.64■■□□□ 1.21
VTI1B-205ENST00000555543 MAPK6Q16659 721 aa22.64■■□□□ 1.21
VTI1B-205ENST00000555543 SYT2Q8N9I0 419 aaPredicted RBP22.64■■□□□ 1.21
VTI1B-205ENST00000555543 CNNM3Q8NE01 707 aa22.64■■□□□ 1.21
VTI1B-205ENST00000555543 MRPS27Q92552 414 aaKnown RBP22.64■■□□□ 1.21
VTI1B-205ENST00000555543 PABPC5Q96DU9 382 aaKnown RBP22.64■■□□□ 1.21
VTI1B-205ENST00000555543 APOL6Q9BWW8 343 aa22.64■■□□□ 1.21
VTI1B-205ENST00000555543 GBP3Q9H0R5 595 aa22.64■■□□□ 1.21
VTI1B-205ENST00000555543 PDZD7Q9H5P4 517 aa22.64■■□□□ 1.21
VTI1B-205ENST00000555543 SPG21Q9NZD8 308 aa22.64■■□□□ 1.21
VTI1B-205ENST00000555543 LZTS1Q9Y250 596 aa22.64■■□□□ 1.21
VTI1B-205ENST00000555543 FSCN2O14926 492 aa22.63■■□□□ 1.21
VTI1B-205ENST00000555543 LINC01565O15544 149 aa22.63■■□□□ 1.21
VTI1B-205ENST00000555543 DDHD2O94830 711 aa22.63■■□□□ 1.21
VTI1B-205ENST00000555543 PLA2G4BP0C869 781 aa22.63■■□□□ 1.21
VTI1B-205ENST00000555543 GUCY2CP25092 1073 aa22.63■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms