RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 TCERG1LQ5VWI1 586 aa13.24□□□□□ -0.29
SHMT2-207ENST00000553837 KIRREL3Q8IZU9 778 aa13.24□□□□□ -0.29
SHMT2-207ENST00000553837 ANKS4BQ8N8V4 417 aa13.24□□□□□ -0.29
SHMT2-207ENST00000553837 NSMCE1Q8WV22 266 aa13.24□□□□□ -0.29
SHMT2-207ENST00000553837 CAMKK2Q96RR4 588 aa13.24□□□□□ -0.29
SHMT2-207ENST00000553837 PSMD1Q99460 953 aa13.24□□□□□ -0.29
SHMT2-207ENST00000553837 LUC7LQ9NQ29 371 aaKnown RBP13.24□□□□□ -0.29
SHMT2-207ENST00000553837 RPS6KL1Q9Y6S9 549 aa13.24□□□□□ -0.29
SHMT2-207ENST00000553837 ZNF536O15090 1300 aa13.23□□□□□ -0.29
SHMT2-207ENST00000553837 GAS7O60861 476 aa13.23□□□□□ -0.29
SHMT2-207ENST00000553837 FAM13AO94988 1023 aa13.23□□□□□ -0.29
SHMT2-207ENST00000553837 CAP2P40123 477 aa13.23□□□□□ -0.29
SHMT2-207ENST00000553837 TTLL6Q8N841 843 aa13.23□□□□□ -0.29
SHMT2-207ENST00000553837 ZNF513Q8N8E2 541 aaPredicted RBP13.23□□□□□ -0.29
SHMT2-207ENST00000553837 IL31RAQ8NI17 732 aa13.23□□□□□ -0.29
SHMT2-207ENST00000553837 OLIG1Q8TAK6 271 aa13.23□□□□□ -0.29
SHMT2-207ENST00000553837 CHURC1Q8WUH1 139 aa13.23□□□□□ -0.29
SHMT2-207ENST00000553837 SPDL1Q96EA4 605 aa13.23□□□□□ -0.29
SHMT2-207ENST00000553837 SPAG5Q96R06 1193 aa13.23□□□□□ -0.29
SHMT2-207ENST00000553837 ZNF577Q9BSK1 485 aa13.23□□□□□ -0.29
SHMT2-207ENST00000553837 CNOT10Q9H9A5 744 aaKnown RBP13.23□□□□□ -0.29
SHMT2-207ENST00000553837 SLC16A3O15427 465 aaKnown RBP13.22□□□□□ -0.29
SHMT2-207ENST00000553837 RAD51CO43502 376 aa13.22□□□□□ -0.29
SHMT2-207ENST00000553837 CAND2O75155 1236 aa13.22□□□□□ -0.29
SHMT2-207ENST00000553837 GAP43P17677 238 aa13.22□□□□□ -0.29
SHMT2-207ENST00000553837 ITGB5P18084 799 aa13.22□□□□□ -0.29
SHMT2-207ENST00000553837 DRD4P21917 467 aa13.22□□□□□ -0.29
SHMT2-207ENST00000553837 JAM2P57087 298 aa13.22□□□□□ -0.29
SHMT2-207ENST00000553837 TRADDQ15628 312 aa13.22□□□□□ -0.29
SHMT2-207ENST00000553837 ANKRD23Q86SG2 305 aa13.22□□□□□ -0.29
SHMT2-207ENST00000553837 CCDC63Q8NA47 563 aa13.22□□□□□ -0.29
SHMT2-207ENST00000553837 CCDC197Q8NCU1 140 aa13.22□□□□□ -0.29
SHMT2-207ENST00000553837 MICAL1Q8TDZ2 1067 aa13.22□□□□□ -0.29
SHMT2-207ENST00000553837 LMBR1Q8WVP7 490 aa13.22□□□□□ -0.29
SHMT2-207ENST00000553837 CENPTQ96BT3 561 aa13.22□□□□□ -0.29
SHMT2-207ENST00000553837 SAAL1Q96ER3 474 aa13.22□□□□□ -0.29
SHMT2-207ENST00000553837 CHMP6Q96FZ7 201 aa13.22□□□□□ -0.29
SHMT2-207ENST00000553837 GOLPH3Q9H4A6 298 aa13.22□□□□□ -0.29
SHMT2-207ENST00000553837 PKD2L1Q9P0L9 805 aa13.22□□□□□ -0.29
SHMT2-207ENST00000553837 C15orf41Q9Y2V0 281 aa13.22□□□□□ -0.29
SHMT2-207ENST00000553837 MRPL11Q9Y3B7 192 aaKnown RBP13.22□□□□□ -0.29
SHMT2-207ENST00000553837 PCDHGC5Q9Y5F6 944 aa13.22□□□□□ -0.29
SHMT2-207ENST00000553837 FRMPD4Q14CM0 1322 aa13.22□□□□□ -0.29
SHMT2-207ENST00000553837 CFAP73A6NFT4 308 aa13.22□□□□□ -0.29
SHMT2-207ENST00000553837 PHF20L1A8MW92 1017 aa13.22□□□□□ -0.29
SHMT2-207ENST00000553837 DDX39AO00148 427 aaKnown RBP13.22□□□□□ -0.29
SHMT2-207ENST00000553837 ANP32DO95626 131 aa13.22□□□□□ -0.29
SHMT2-207ENST00000553837 PTGER2P43116 358 aa13.22□□□□□ -0.29
SHMT2-207ENST00000553837 ZNF131P52739 623 aa13.22□□□□□ -0.29
SHMT2-207ENST00000553837 MYO1EQ12965 1108 aa13.22□□□□□ -0.29
SHMT2-207ENST00000553837 MEI1Q5TIA1 1274 aa13.22□□□□□ -0.29
SHMT2-207ENST00000553837 ZNF720Q7Z2F6 126 aa13.22□□□□□ -0.29
SHMT2-207ENST00000553837 DAW1Q8N136 415 aa13.22□□□□□ -0.29
SHMT2-207ENST00000553837 OGFOD1Q8N543 542 aa13.22□□□□□ -0.29
SHMT2-207ENST00000553837 DRAXINQ8NBI3 349 aaPredicted RBP13.22□□□□□ -0.29
SHMT2-207ENST00000553837 STAMBPL1Q96FJ0 436 aa13.22□□□□□ -0.29
SHMT2-207ENST00000553837 PARVGQ9HBI0 331 aa13.22□□□□□ -0.29
SHMT2-207ENST00000553837 GCNT4Q9P109 453 aa13.22□□□□□ -0.29
SHMT2-207ENST00000553837 NENFQ9UMX5 172 aa13.22□□□□□ -0.29
SHMT2-207ENST00000553837 NOVA2Q9UNW9 492 aaKnown RBP13.22□□□□□ -0.29
SHMT2-207ENST00000553837 TRPC6Q9Y210 931 aa13.22□□□□□ -0.29
SHMT2-207ENST00000553837 RGPD3A6NKT7 1758 aaPredicted RBP13.21□□□□□ -0.29
SHMT2-207ENST00000553837 RGPD4Q7Z3J3 1758 aa13.21□□□□□ -0.29
SHMT2-207ENST00000553837 NFIBO00712 420 aa13.21□□□□□ -0.29
SHMT2-207ENST00000553837 EIF3DO15371 548 aaKnown RBP eCLIP13.21□□□□□ -0.29
SHMT2-207ENST00000553837 TBC1D12O60347 775 aa13.21□□□□□ -0.29
SHMT2-207ENST00000553837 PLA2G6O60733 806 aa13.21□□□□□ -0.29
SHMT2-207ENST00000553837 SKAP2O75563 359 aaPredicted RBP13.21□□□□□ -0.29
SHMT2-207ENST00000553837 DPEP1P16444 411 aa13.21□□□□□ -0.29
SHMT2-207ENST00000553837 RPL13P26373 211 aaKnown RBP13.21□□□□□ -0.29
SHMT2-207ENST00000553837 MAPK7Q13164 816 aa13.21□□□□□ -0.29
SHMT2-207ENST00000553837 BZW1Q7L1Q6 419 aaKnown RBP13.21□□□□□ -0.29
SHMT2-207ENST00000553837 USP38Q8NB14 1042 aa13.21□□□□□ -0.29
SHMT2-207ENST00000553837 OR2W6PQ8NHA6 318 aa13.21□□□□□ -0.29
SHMT2-207ENST00000553837 THOC1Q96FV9 657 aaKnown RBP13.21□□□□□ -0.29
SHMT2-207ENST00000553837 ZBED3Q96IU2 234 aaPredicted RBP13.21□□□□□ -0.29
SHMT2-207ENST00000553837 LXNQ9BS40 222 aa13.21□□□□□ -0.29
SHMT2-207ENST00000553837 CNOT8Q9UFF9 292 aaKnown RBP13.21□□□□□ -0.29
SHMT2-207ENST00000553837 NAGPAQ9UK23 515 aa13.21□□□□□ -0.29
SHMT2-207ENST00000553837 IPO5O00410 1097 aaKnown RBP13.21□□□□□ -0.3
SHMT2-207ENST00000553837 CES2O00748 559 aa13.21□□□□□ -0.3
SHMT2-207ENST00000553837 UAP1Q16222 522 aaPredicted RBP13.21□□□□□ -0.3
SHMT2-207ENST00000553837 PTPROQ16827 1216 aa13.21□□□□□ -0.3
SHMT2-207ENST00000553837 KLHL7Q8IXQ5 586 aa13.21□□□□□ -0.3
SHMT2-207ENST00000553837 FAM186BQ8IYM0 893 aa13.21□□□□□ -0.3
SHMT2-207ENST00000553837 CLEC4DQ8WXI8 215 aa13.21□□□□□ -0.3
SHMT2-207ENST00000553837 WDR11Q9BZH6 1224 aa13.21□□□□□ -0.3
SHMT2-207ENST00000553837 KIF9Q9HAQ2 790 aa13.21□□□□□ -0.3
SHMT2-207ENST00000553837 METTL14Q9HCE5 456 aaKnown RBP13.21□□□□□ -0.3
SHMT2-207ENST00000553837 STK32BQ9NY57 414 aa13.21□□□□□ -0.3
SHMT2-207ENST00000553837 FEM1BQ9UK73 627 aa13.21□□□□□ -0.3
SHMT2-207ENST00000553837 WNT10BO00744 389 aa13.2□□□□□ -0.3
SHMT2-207ENST00000553837 CLTAP09496 248 aa13.2□□□□□ -0.3
SHMT2-207ENST00000553837 SETSIPP0DME0 302 aa13.2□□□□□ -0.3
SHMT2-207ENST00000553837 PRKCIP41743 596 aa13.2□□□□□ -0.3
SHMT2-207ENST00000553837 HSD17B4P51659 736 aa13.2□□□□□ -0.3
SHMT2-207ENST00000553837 RNASE9P60153 205 aaKnown RBP13.2□□□□□ -0.3
SHMT2-207ENST00000553837 ERVK-9P63128 1117 aa13.2□□□□□ -0.3
SHMT2-207ENST00000553837 ITIH4Q14624 930 aa13.2□□□□□ -0.3
SHMT2-207ENST00000553837 CBWD6Q4V339 395 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms