RNA–Protein interactions for RNA: ENST00000551425.1

PTCH1-222, Transcript of patched 1, human

TSL 1 (best)

Gene PTCH1, Length 241 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCH1-222	ENST00000551425	URGCP	Q8TCY9	931 aa		13.48	□□□□□ -0.25
PTCH1-222	ENST00000551425	PHKB	Q93100	1093 aa		13.48	□□□□□ -0.25
PTCH1-222	ENST00000551425	CLDN23	Q96B33	292 aa		13.48	□□□□□ -0.25
PTCH1-222	ENST00000551425	PGBD4	Q96DM1	585 aa		13.48	□□□□□ -0.25
PTCH1-222	ENST00000551425	RPP25	Q9BUL9	199 aa	Known RBP	13.48	□□□□□ -0.25
PTCH1-222	ENST00000551425	PRKD2	Q9BZL6	878 aa		13.48	□□□□□ -0.25
PTCH1-222	ENST00000551425	LTB4R2	Q9NPC1	389 aa		13.48	□□□□□ -0.25
PTCH1-222	ENST00000551425	PRMT8	Q9NR22	394 aa	Predicted RBP	13.48	□□□□□ -0.25
PTCH1-222	ENST00000551425	GABBR1	Q9UBS5	961 aa		13.48	□□□□□ -0.25
PTCH1-222	ENST00000551425	FAN1	Q9Y2M0	1017 aa		13.48	□□□□□ -0.25
PTCH1-222	ENST00000551425	FAM208B	Q5VWN6	2430 aa		13.47	□□□□□ -0.25
PTCH1-222	ENST00000551425	NRP1	O14786	923 aa		13.47	□□□□□ -0.25
PTCH1-222	ENST00000551425	LRP3	O75074	770 aa		13.47	□□□□□ -0.25
PTCH1-222	ENST00000551425	SFPQ	P23246	707 aa	Known RBP eCLIP	13.47	□□□□□ -0.25
PTCH1-222	ENST00000551425	RPS9	P46781	194 aa	Known RBP	13.47	□□□□□ -0.25
PTCH1-222	ENST00000551425	GLUD2	P49448	558 aa		13.47	□□□□□ -0.25
PTCH1-222	ENST00000551425	ZBTB41	Q5SVQ8	909 aa		13.47	□□□□□ -0.25
PTCH1-222	ENST00000551425	WWC2	Q6AWC2	1192 aa		13.47	□□□□□ -0.25
PTCH1-222	ENST00000551425	TYW1B	Q6NUM6	668 aa		13.47	□□□□□ -0.25
PTCH1-222	ENST00000551425	PPP1R18	Q6NYC8	613 aa		13.47	□□□□□ -0.25
PTCH1-222	ENST00000551425	PARM1	Q6UWI2	310 aa		13.47	□□□□□ -0.25
PTCH1-222	ENST00000551425	TMTC3	Q6ZXV5	915 aa		13.47	□□□□□ -0.25
PTCH1-222	ENST00000551425	TAS1R1	Q7RTX1	841 aa		13.47	□□□□□ -0.25
PTCH1-222	ENST00000551425	CCDC82	Q8N4S0	544 aa		13.47	□□□□□ -0.25
PTCH1-222	ENST00000551425	FGF14	Q92915	247 aa		13.47	□□□□□ -0.25
PTCH1-222	ENST00000551425	ZNF577	Q9BSK1	485 aa		13.47	□□□□□ -0.25
PTCH1-222	ENST00000551425	NRBP2	Q9NSY0	501 aa		13.47	□□□□□ -0.25
PTCH1-222	ENST00000551425	KANSL3	Q9P2N6	904 aa		13.47	□□□□□ -0.25
PTCH1-222	ENST00000551425	PIN4	Q9Y237	131 aa	Known RBP	13.47	□□□□□ -0.25
PTCH1-222	ENST00000551425	PATJ	Q8NI35	1801 aa		13.47	□□□□□ -0.25
PTCH1-222	ENST00000551425	ZNF862	O60290	1169 aa		13.46	□□□□□ -0.25
PTCH1-222	ENST00000551425	OAT	P04181	439 aa		13.46	□□□□□ -0.25
PTCH1-222	ENST00000551425	CYP3A4	P08684	503 aa		13.46	□□□□□ -0.25
PTCH1-222	ENST00000551425	SPATA31D3	P0C874	917 aa		13.46	□□□□□ -0.25
PTCH1-222	ENST00000551425	MYB	P10242	640 aa		13.46	□□□□□ -0.25
PTCH1-222	ENST00000551425	RXRA	P19793	462 aa		13.46	□□□□□ -0.25
PTCH1-222	ENST00000551425	CLK2	P49760	499 aa	Known RBP	13.46	□□□□□ -0.25
PTCH1-222	ENST00000551425	ADCY7	P51828	1080 aa		13.46	□□□□□ -0.25
PTCH1-222	ENST00000551425	NAPA	P54920	295 aa		13.46	□□□□□ -0.25
PTCH1-222	ENST00000551425	PFKP	Q01813	784 aa		13.46	□□□□□ -0.25
PTCH1-222	ENST00000551425	DSG1	Q02413	1049 aa		13.46	□□□□□ -0.25
PTCH1-222	ENST00000551425	PTH1R	Q03431	593 aa		13.46	□□□□□ -0.25
PTCH1-222	ENST00000551425	DMWD	Q09019	674 aa		13.46	□□□□□ -0.25
PTCH1-222	ENST00000551425	SPEM2	Q0P670	501 aa		13.46	□□□□□ -0.25
PTCH1-222	ENST00000551425	COL9A3	Q14050	684 aa	Predicted RBP	13.46	□□□□□ -0.25
PTCH1-222	ENST00000551425	LAIR1	Q6GTX8	287 aa		13.46	□□□□□ -0.25
PTCH1-222	ENST00000551425	LILRA6	Q6PI73	481 aa		13.46	□□□□□ -0.25
PTCH1-222	ENST00000551425	NFXL1	Q6ZNB6	911 aa		13.46	□□□□□ -0.25
PTCH1-222	ENST00000551425	AGMO	Q6ZNB7	445 aa		13.46	□□□□□ -0.25
PTCH1-222	ENST00000551425	SPATA31D4	Q6ZUB0	917 aa		13.46	□□□□□ -0.25
PTCH1-222	ENST00000551425	MRPL10	Q7Z7H8	261 aa	Known RBP	13.46	□□□□□ -0.25
PTCH1-222	ENST00000551425	SMC5	Q8IY18	1101 aa		13.46	□□□□□ -0.25
PTCH1-222	ENST00000551425	ST13P5	Q8NFI4	369 aa	Predicted RBP	13.46	□□□□□ -0.25
PTCH1-222	ENST00000551425	CRYGN	Q8WXF5	182 aa		13.46	□□□□□ -0.25
PTCH1-222	ENST00000551425	FAM193B	Q96PV7	902 aa	Predicted RBP	13.46	□□□□□ -0.25
PTCH1-222	ENST00000551425	NELL2	Q99435	816 aa		13.46	□□□□□ -0.25
PTCH1-222	ENST00000551425	INO80B	Q9C086	356 aa	Predicted RBP	13.46	□□□□□ -0.25
PTCH1-222	ENST00000551425	MARCH5	Q9NX47	278 aa		13.46	□□□□□ -0.25
PTCH1-222	ENST00000551425	ANGPTL2	Q9UKU9	493 aa		13.46	□□□□□ -0.25
PTCH1-222	ENST00000551425	CDH7	Q9ULB5	785 aa		13.46	□□□□□ -0.25
PTCH1-222	ENST00000551425	DYNC1LI1	Q9Y6G9	523 aa	Known RBP	13.46	□□□□□ -0.25
PTCH1-222	ENST00000551425	CNTNAP2	Q9UHC6	1331 aa		13.45	□□□□□ -0.26
PTCH1-222	ENST00000551425	MIA3	Q5JRA6	1907 aa		13.45	□□□□□ -0.26
PTCH1-222	ENST00000551425		A0A087WZ62	844 aa		13.45	□□□□□ -0.26
PTCH1-222	ENST00000551425	LOC105378220	A0A1B0GUY1	285 aa	Predicted RBP	13.45	□□□□□ -0.26
PTCH1-222	ENST00000551425	CCDC69	A6NI79	296 aa		13.45	□□□□□ -0.26
PTCH1-222	ENST00000551425	SH2B2	O14492	632 aa	Predicted RBP	13.45	□□□□□ -0.26
PTCH1-222	ENST00000551425	NCAM2	O15394	837 aa		13.45	□□□□□ -0.26
PTCH1-222	ENST00000551425	TGM5	O43548	720 aa		13.45	□□□□□ -0.26
PTCH1-222	ENST00000551425	GAS2	O43903	313 aa	Known RBP	13.45	□□□□□ -0.26
PTCH1-222	ENST00000551425	FSHR	P23945	695 aa		13.45	□□□□□ -0.26
PTCH1-222	ENST00000551425	AFF1	P51825	1210 aa	Known RBP	13.45	□□□□□ -0.26
PTCH1-222	ENST00000551425	SHC2	P98077	582 aa		13.45	□□□□□ -0.26
PTCH1-222	ENST00000551425	SET	Q01105	290 aa	Predicted RBP	13.45	□□□□□ -0.26
PTCH1-222	ENST00000551425	DRP2	Q13474	957 aa		13.45	□□□□□ -0.26
PTCH1-222	ENST00000551425	TARBP2	Q15633	366 aa	Known RBP	13.45	□□□□□ -0.26
PTCH1-222	ENST00000551425	TSSK4	Q6SA08	328 aa		13.45	□□□□□ -0.26
PTCH1-222	ENST00000551425	CASC1	Q6TDU7	716 aa		13.45	□□□□□ -0.26
PTCH1-222	ENST00000551425	MTSS1L	Q765P7	747 aa		13.45	□□□□□ -0.26
PTCH1-222	ENST00000551425	ZNF410	Q86VK4	478 aa		13.45	□□□□□ -0.26
PTCH1-222	ENST00000551425	CHD1L	Q86WJ1	897 aa		13.45	□□□□□ -0.26
PTCH1-222	ENST00000551425	GPR65	Q8IYL9	337 aa		13.45	□□□□□ -0.26
PTCH1-222	ENST00000551425	FANCB	Q8NB91	859 aa		13.45	□□□□□ -0.26
PTCH1-222	ENST00000551425	DDX1	Q92499	740 aa	Known RBP	13.45	□□□□□ -0.26
PTCH1-222	ENST00000551425	FDXACB1	Q9BRP7	624 aa	Predicted RBP	13.45	□□□□□ -0.26
PTCH1-222	ENST00000551425	GLT8D2	Q9H1C3	349 aa		13.45	□□□□□ -0.26
PTCH1-222	ENST00000551425	RSAD1	Q9HA92	442 aa		13.45	□□□□□ -0.26
PTCH1-222	ENST00000551425	TCEAL9	Q9UHQ7	104 aa		13.45	□□□□□ -0.26
PTCH1-222	ENST00000551425	RAB23	Q9ULC3	237 aa		13.45	□□□□□ -0.26
PTCH1-222	ENST00000551425	PCDHB2	Q9Y5E7	798 aa		13.45	□□□□□ -0.26
PTCH1-222	ENST00000551425	COL4A3	Q01955	1670 aa		13.44	□□□□□ -0.26
PTCH1-222	ENST00000551425	WDR64	B1ANS9	1081 aa		13.44	□□□□□ -0.26
PTCH1-222	ENST00000551425	PRC1	O43663	620 aa		13.44	□□□□□ -0.26
PTCH1-222	ENST00000551425	ZMYND10	O75800	440 aa		13.44	□□□□□ -0.26
PTCH1-222	ENST00000551425	RET	P07949	1114 aa		13.44	□□□□□ -0.26
PTCH1-222	ENST00000551425	TDGF1	P13385	188 aa		13.44	□□□□□ -0.26
PTCH1-222	ENST00000551425	CD72	P21854	359 aa		13.44	□□□□□ -0.26
PTCH1-222	ENST00000551425	TARS	P26639	723 aa	Known RBP	13.44	□□□□□ -0.26
PTCH1-222	ENST00000551425	PML	P29590	882 aa		13.44	□□□□□ -0.26
PTCH1-222	ENST00000551425	LIFR	P42702	1097 aa		13.44	□□□□□ -0.26

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