RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 NTMQ9P121 344 aa6.33□□□□□ -1.4
LIMA1-205ENST00000550592 RCAN3Q9UKA8 241 aa6.33□□□□□ -1.4
LIMA1-205ENST00000550592 TCAF2A6NFQ2 919 aa6.32□□□□□ -1.4
LIMA1-205ENST00000550592 TMEM127O75204 238 aa6.32□□□□□ -1.4
LIMA1-205ENST00000550592 HMGCRP04035 888 aa6.32□□□□□ -1.4
LIMA1-205ENST00000550592 GAAP10253 952 aa6.32□□□□□ -1.4
LIMA1-205ENST00000550592 HNRNPLP14866 589 aaKnown RBP eCLIP6.32□□□□□ -1.4
LIMA1-205ENST00000550592 STAT5BP51692 787 aa6.32□□□□□ -1.4
LIMA1-205ENST00000550592 GBX1Q14549 363 aa6.32□□□□□ -1.4
LIMA1-205ENST00000550592 ZNF827Q17R98 1081 aa6.32□□□□□ -1.4
LIMA1-205ENST00000550592 KLHDC10Q6PID8 442 aa6.32□□□□□ -1.4
LIMA1-205ENST00000550592 CATIPQ7Z7H3 387 aa6.32□□□□□ -1.4
LIMA1-205ENST00000550592 UNC5BQ8IZJ1 945 aa6.32□□□□□ -1.4
LIMA1-205ENST00000550592 DACT3Q96B18 629 aaPredicted RBP6.32□□□□□ -1.4
LIMA1-205ENST00000550592 CD320Q9NPF0 282 aa6.32□□□□□ -1.4
LIMA1-205ENST00000550592 INTUQ9ULD6 942 aa6.32□□□□□ -1.4
LIMA1-205ENST00000550592 DNM3Q9UQ16 869 aa6.32□□□□□ -1.4
LIMA1-205ENST00000550592 RPTORQ8N122 1335 aa6.31□□□□□ -1.4
LIMA1-205ENST00000550592 CCDC154A6NI56 674 aa6.31□□□□□ -1.4
LIMA1-205ENST00000550592 RFXAPO00287 272 aa6.31□□□□□ -1.4
LIMA1-205ENST00000550592 FFAR3O14843 346 aa6.31□□□□□ -1.4
LIMA1-205ENST00000550592 DAPK3O43293 454 aa6.31□□□□□ -1.4
LIMA1-205ENST00000550592 LTA4HP09960 611 aaKnown RBP6.31□□□□□ -1.4
LIMA1-205ENST00000550592 C1QTNF9P0C862 333 aa6.31□□□□□ -1.4
LIMA1-205ENST00000550592 CTSSP25774 331 aa6.31□□□□□ -1.4
LIMA1-205ENST00000550592 SARSP49591 514 aaKnown RBP6.31□□□□□ -1.4
LIMA1-205ENST00000550592 MGAT2Q10469 447 aa6.31□□□□□ -1.4
LIMA1-205ENST00000550592 ZNF267Q14586 743 aaPredicted RBP6.31□□□□□ -1.4
LIMA1-205ENST00000550592 ARHGAP29Q52LW3 1261 aa6.31□□□□□ -1.4
LIMA1-205ENST00000550592 ZNF385BQ569K4 471 aa6.31□□□□□ -1.4
LIMA1-205ENST00000550592 C19orf54Q5BKX5 351 aa6.31□□□□□ -1.4
LIMA1-205ENST00000550592 GJC2Q5T442 439 aaPredicted RBP6.31□□□□□ -1.4
LIMA1-205ENST00000550592 XP32Q5T750 250 aa6.31□□□□□ -1.4
LIMA1-205ENST00000550592 FAM180AQ6UWF9 173 aa6.31□□□□□ -1.4
LIMA1-205ENST00000550592 LARP4Q71RC2 724 aaKnown RBP eCLIP6.31□□□□□ -1.4
LIMA1-205ENST00000550592 TAS1R1Q7RTX1 841 aa6.31□□□□□ -1.4
LIMA1-205ENST00000550592 CLEC14AQ86T13 490 aa6.31□□□□□ -1.4
LIMA1-205ENST00000550592 CCDC146Q8IYE0 955 aa6.31□□□□□ -1.4
LIMA1-205ENST00000550592 RIN2Q8WYP3 895 aaPredicted RBP6.31□□□□□ -1.4
LIMA1-205ENST00000550592 MAP3K14Q99558 947 aa6.31□□□□□ -1.4
LIMA1-205ENST00000550592 SPATA25Q9BR10 227 aa6.31□□□□□ -1.4
LIMA1-205ENST00000550592 CARD11Q9BXL7 1154 aa6.31□□□□□ -1.4
LIMA1-205ENST00000550592 TMEM168Q9H0V1 697 aa6.31□□□□□ -1.4
LIMA1-205ENST00000550592 DMRT3Q9NQL9 472 aa6.31□□□□□ -1.4
LIMA1-205ENST00000550592 C1orf112Q9NSG2 853 aa6.31□□□□□ -1.4
LIMA1-205ENST00000550592 ADAM29Q9UKF5 820 aa6.31□□□□□ -1.4
LIMA1-205ENST00000550592 RSF1Q96T23 1441 aaPredicted RBP6.31□□□□□ -1.4
LIMA1-205ENST00000550592 C9orf118A6NHY6 69 aa6.3□□□□□ -1.4
LIMA1-205ENST00000550592 CTNND1O60716 968 aaKnown RBP6.3□□□□□ -1.4
LIMA1-205ENST00000550592 TSPAN15O95858 294 aa6.3□□□□□ -1.4
LIMA1-205ENST00000550592 KRT18P05783 430 aaKnown RBP6.3□□□□□ -1.4
LIMA1-205ENST00000550592 PCOLCEQ15113 449 aa6.3□□□□□ -1.4
LIMA1-205ENST00000550592 UBE3CQ15386 1083 aa6.3□□□□□ -1.4
LIMA1-205ENST00000550592 ABHD15Q6UXT9 468 aa6.3□□□□□ -1.4
LIMA1-205ENST00000550592 CCAR1Q8IX12 1150 aaKnown RBP6.3□□□□□ -1.4
LIMA1-205ENST00000550592 RTKN2Q8IZC4 609 aa6.3□□□□□ -1.4
LIMA1-205ENST00000550592 CARFQ8N187 725 aa6.3□□□□□ -1.4
LIMA1-205ENST00000550592 KLHL36Q8N4N3 616 aa6.3□□□□□ -1.4
LIMA1-205ENST00000550592 TXNDC5Q8NBS9 432 aaKnown RBP6.3□□□□□ -1.4
LIMA1-205ENST00000550592 PIK3C3Q8NEB9 887 aa6.3□□□□□ -1.4
LIMA1-205ENST00000550592 DIS3LQ8TF46 1054 aaKnown RBP6.3□□□□□ -1.4
LIMA1-205ENST00000550592 SNX33Q8WV41 574 aa6.3□□□□□ -1.4
LIMA1-205ENST00000550592 DPF2Q92785 391 aa6.3□□□□□ -1.4
LIMA1-205ENST00000550592 HDAC10Q969S8 669 aa6.3□□□□□ -1.4
LIMA1-205ENST00000550592 C1GALT1C1Q96EU7 318 aa6.3□□□□□ -1.4
LIMA1-205ENST00000550592 MVB12AQ96EY5 273 aa6.3□□□□□ -1.4
LIMA1-205ENST00000550592 ARNT2Q9HBZ2 717 aa6.3□□□□□ -1.4
LIMA1-205ENST00000550592 BAZ1BQ9UIG0 1483 aaKnown RBP6.29□□□□□ -1.4
LIMA1-205ENST00000550592 C2orf78A6NCI8 922 aa6.29□□□□□ -1.4
LIMA1-205ENST00000550592 FAM171A2A8MVW0 826 aa6.29□□□□□ -1.4
LIMA1-205ENST00000550592 PHF2O75151 1096 aa6.29□□□□□ -1.4
LIMA1-205ENST00000550592 MAP4K4O95819 1239 aaPredicted RBP6.29□□□□□ -1.4
LIMA1-205ENST00000550592 CSF2RBP32927 897 aa6.29□□□□□ -1.4
LIMA1-205ENST00000550592 MEOX1P50221 254 aa6.29□□□□□ -1.4
LIMA1-205ENST00000550592 FXR1P51114 621 aaKnown RBP eCLIP6.29□□□□□ -1.4
LIMA1-205ENST00000550592 GRM3Q14832 879 aa6.29□□□□□ -1.4
LIMA1-205ENST00000550592 NOMO1Q15155 1222 aa6.29□□□□□ -1.4
LIMA1-205ENST00000550592 C3orf36Q3SXR2 165 aa6.29□□□□□ -1.4
LIMA1-205ENST00000550592 MAP9Q49MG5 647 aa6.29□□□□□ -1.4
LIMA1-205ENST00000550592 FAM26FQ5R3K3 315 aa6.29□□□□□ -1.4
LIMA1-205ENST00000550592 ERCC6L2Q5T890 1561 aa6.29□□□□□ -1.4
LIMA1-205ENST00000550592 MCTP2Q6DN12 878 aa6.29□□□□□ -1.4
LIMA1-205ENST00000550592 OR2I1PQ8NGU4 316 aa6.29□□□□□ -1.4
LIMA1-205ENST00000550592 DDX55Q8NHQ9 600 aaKnown RBP eCLIP6.29□□□□□ -1.4
LIMA1-205ENST00000550592 HOXB13Q92826 284 aaPredicted RBP6.29□□□□□ -1.4
LIMA1-205ENST00000550592 LPPQ93052 612 aa6.29□□□□□ -1.4
LIMA1-205ENST00000550592 SLC38A3Q99624 504 aa6.29□□□□□ -1.4
LIMA1-205ENST00000550592 ACO2Q99798 780 aaKnown RBP6.29□□□□□ -1.4
LIMA1-205ENST00000550592 BARX1Q9HBU1 254 aaPredicted RBP6.29□□□□□ -1.4
LIMA1-205ENST00000550592 CTDP1Q9Y5B0 961 aaPredicted RBP6.29□□□□□ -1.4
LIMA1-205ENST00000550592 ZCCHC6Q5VYS8 1495 aaKnown RBP6.28□□□□□ -1.4
LIMA1-205ENST00000550592 AKR1B10O60218 316 aa6.28□□□□□ -1.4
LIMA1-205ENST00000550592 DTNBO60941 627 aa6.28□□□□□ -1.4
LIMA1-205ENST00000550592 CYP1A1P04798 512 aaPredicted RBP6.28□□□□□ -1.4
LIMA1-205ENST00000550592 MRE11P49959 708 aa6.28□□□□□ -1.4
LIMA1-205ENST00000550592 LINC00310P59036 64 aa6.28□□□□□ -1.4
LIMA1-205ENST00000550592 ADAM15Q13444 863 aa6.28□□□□□ -1.4
LIMA1-205ENST00000550592 USP10Q14694 798 aaKnown RBP6.28□□□□□ -1.4
LIMA1-205ENST00000550592 SEPT2Q15019 361 aa6.28□□□□□ -1.4
LIMA1-205ENST00000550592 PGS1Q32NB8 556 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms