RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 C2CD4DB7Z1M9 353 aa7.57□□□□□ -1.2
LIMA1-204ENST00000549064 ENPP3O14638 875 aa7.57□□□□□ -1.2
LIMA1-204ENST00000549064 KHNYNO15037 678 aaKnown RBP7.57□□□□□ -1.2
LIMA1-204ENST00000549064 ATXN7O15265 892 aaPredicted RBP7.57□□□□□ -1.2
LIMA1-204ENST00000549064 PI15O43692 258 aa7.57□□□□□ -1.2
LIMA1-204ENST00000549064 DGKIO75912 1065 aa7.57□□□□□ -1.2
LIMA1-204ENST00000549064 ASGR2P07307 311 aa7.57□□□□□ -1.2
LIMA1-204ENST00000549064 HOXD8P13378 290 aaPredicted RBP7.57□□□□□ -1.2
LIMA1-204ENST00000549064 EIF2AK2P19525 551 aaKnown RBP7.57□□□□□ -1.2
LIMA1-204ENST00000549064 HOXC8P31273 242 aa7.57□□□□□ -1.2
LIMA1-204ENST00000549064 ETFBP38117 255 aa7.57□□□□□ -1.2
LIMA1-204ENST00000549064 GATMP50440 423 aa7.57□□□□□ -1.2
LIMA1-204ENST00000549064 MRPL12P52815 198 aaKnown RBP7.57□□□□□ -1.2
LIMA1-204ENST00000549064 PPARAQ07869 468 aa7.57□□□□□ -1.2
LIMA1-204ENST00000549064 LAMC2Q13753 1193 aa7.57□□□□□ -1.2
LIMA1-204ENST00000549064 ANGPT1Q15389 498 aa7.57□□□□□ -1.2
LIMA1-204ENST00000549064 STXBP2Q15833 593 aa7.57□□□□□ -1.2
LIMA1-204ENST00000549064 EFHC2Q5JST6 749 aa7.57□□□□□ -1.2
LIMA1-204ENST00000549064 ZNF746Q6NUN9 644 aaPredicted RBP7.57□□□□□ -1.2
LIMA1-204ENST00000549064 FBXL19Q6PCT2 694 aa7.57□□□□□ -1.2
LIMA1-204ENST00000549064 SYCE2Q6PIF2 218 aa7.57□□□□□ -1.2
LIMA1-204ENST00000549064 TRIM46Q7Z4K8 759 aa7.57□□□□□ -1.2
LIMA1-204ENST00000549064 FTSJ3Q8IY81 847 aaKnown RBP7.57□□□□□ -1.2
LIMA1-204ENST00000549064 FLCNQ8NFG4 579 aa7.57□□□□□ -1.2
LIMA1-204ENST00000549064 SYTL5Q8TDW5 730 aaPredicted RBP7.57□□□□□ -1.2
LIMA1-204ENST00000549064 LINC01599Q8WXQ3 324 aa7.57□□□□□ -1.2
LIMA1-204ENST00000549064 APPBP2Q92624 585 aa7.57□□□□□ -1.2
LIMA1-204ENST00000549064 SEC62Q99442 399 aaKnown RBP7.57□□□□□ -1.2
LIMA1-204ENST00000549064 OSMRQ99650 979 aa7.57□□□□□ -1.2
LIMA1-204ENST00000549064 ZKSCAN3Q9BRR0 538 aa7.57□□□□□ -1.2
LIMA1-204ENST00000549064 S1PR5Q9H228 398 aa7.57□□□□□ -1.2
LIMA1-204ENST00000549064 CPVLQ9H3G5 476 aa7.57□□□□□ -1.2
LIMA1-204ENST00000549064 MFSD1Q9H3U5 465 aa7.57□□□□□ -1.2
LIMA1-204ENST00000549064 WDR3Q9UNX4 943 aaKnown RBP eCLIP7.57□□□□□ -1.2
LIMA1-204ENST00000549064 DDX52Q9Y2R4 599 aaKnown RBP eCLIP7.57□□□□□ -1.2
LIMA1-204ENST00000549064 WDR19Q8NEZ3 1342 aa7.56□□□□□ -1.2
LIMA1-204ENST00000549064 OTOGLQ3ZCN5 2332 aa7.56□□□□□ -1.2
LIMA1-204ENST00000549064 FANCMQ8IYD8 2048 aa7.56□□□□□ -1.2
LIMA1-204ENST00000549064 FNDC1Q4ZHG4 1894 aaPredicted RBP7.56□□□□□ -1.2
LIMA1-204ENST00000549064 METTL12A8MUP2 240 aa7.56□□□□□ -1.2
LIMA1-204ENST00000549064 PPFIA4O75335 1185 aa7.56□□□□□ -1.2
LIMA1-204ENST00000549064 GGPS1O95749 300 aa7.56□□□□□ -1.2
LIMA1-204ENST00000549064 CHRNA1P02708 482 aa7.56□□□□□ -1.2
LIMA1-204ENST00000549064 THBS1P07996 1170 aa7.56□□□□□ -1.2
LIMA1-204ENST00000549064 FAM157BP0CG42 384 aa7.56□□□□□ -1.2
LIMA1-204ENST00000549064 NFKB1P19838 968 aa7.56□□□□□ -1.2
LIMA1-204ENST00000549064 TECP42680 631 aa7.56□□□□□ -1.2
LIMA1-204ENST00000549064 LIG3P49916 1009 aa7.56□□□□□ -1.2
LIMA1-204ENST00000549064 NFX1Q12986 1120 aaKnown RBP7.56□□□□□ -1.2
LIMA1-204ENST00000549064 ANKRD54Q6NXT1 300 aa7.56□□□□□ -1.2
LIMA1-204ENST00000549064 LLGL2Q6P1M3 1020 aa7.56□□□□□ -1.2
LIMA1-204ENST00000549064 SV2BQ7L1I2 683 aa7.56□□□□□ -1.2
LIMA1-204ENST00000549064 CCNJLQ8IV13 435 aa7.56□□□□□ -1.2
LIMA1-204ENST00000549064 UBALD2Q8IYN6 164 aa7.56□□□□□ -1.2
LIMA1-204ENST00000549064 DCLK2Q8N568 766 aa7.56□□□□□ -1.2
LIMA1-204ENST00000549064 PHC3Q8NDX5 983 aa7.56□□□□□ -1.2
LIMA1-204ENST00000549064 MICAL1Q8TDZ2 1067 aa7.56□□□□□ -1.2
LIMA1-204ENST00000549064 NSUN6Q8TEA1 469 aaKnown RBP7.56□□□□□ -1.2
LIMA1-204ENST00000549064 SPATA33Q96N06 139 aa7.56□□□□□ -1.2
LIMA1-204ENST00000549064 NEK1Q96PY6 1258 aa7.56□□□□□ -1.2
LIMA1-204ENST00000549064 RMDN3Q96TC7 470 aa7.56□□□□□ -1.2
LIMA1-204ENST00000549064 BCAS3Q9H6U6 928 aa7.56□□□□□ -1.2
LIMA1-204ENST00000549064 SETD4Q9NVD3 440 aa7.56□□□□□ -1.2
LIMA1-204ENST00000549064 DLL3Q9NYJ7 618 aa7.56□□□□□ -1.2
LIMA1-204ENST00000549064 DNMT3LQ9UJW3 386 aa7.56□□□□□ -1.2
LIMA1-204ENST00000549064 R4GN57 208 aa7.56□□□□□ -1.2
LIMA1-204ENST00000549064 ASPMQ8IZT6 3477 aa7.55□□□□□ -1.2
LIMA1-204ENST00000549064 K7ELQ4 463 aaPredicted RBP7.55□□□□□ -1.2
LIMA1-204ENST00000549064 RNF113AO15541 343 aaKnown RBP7.55□□□□□ -1.2
LIMA1-204ENST00000549064 EFSO43281 561 aa7.55□□□□□ -1.2
LIMA1-204ENST00000549064 RANBP6O60518 1105 aaKnown RBP7.55□□□□□ -1.2
LIMA1-204ENST00000549064 CAND2O75155 1236 aa7.55□□□□□ -1.2
LIMA1-204ENST00000549064 LMNAP02545 664 aaKnown RBP7.55□□□□□ -1.2
LIMA1-204ENST00000549064 PF4P02776 101 aa7.55□□□□□ -1.2
LIMA1-204ENST00000549064 LGALS2P05162 132 aa7.55□□□□□ -1.2
LIMA1-204ENST00000549064 SLC3A2P08195 630 aaKnown RBP7.55□□□□□ -1.2
LIMA1-204ENST00000549064 WEE2P0C1S8 567 aa7.55□□□□□ -1.2
LIMA1-204ENST00000549064 PDHBP11177 359 aa7.55□□□□□ -1.2
LIMA1-204ENST00000549064 GNAT2P19087 354 aa7.55□□□□□ -1.2
LIMA1-204ENST00000549064 IBSPP21815 317 aaPredicted RBP7.55□□□□□ -1.2
LIMA1-204ENST00000549064 GARTP22102 1010 aa7.55□□□□□ -1.2
LIMA1-204ENST00000549064 GRIA4P48058 902 aa7.55□□□□□ -1.2
LIMA1-204ENST00000549064 NOVP48745 357 aa7.55□□□□□ -1.2
LIMA1-204ENST00000549064 CLCN5P51795 746 aa7.55□□□□□ -1.2
LIMA1-204ENST00000549064 ERVFC1P60507 584 aa7.55□□□□□ -1.2
LIMA1-204ENST00000549064 SP2Q02086 613 aa7.55□□□□□ -1.2
LIMA1-204ENST00000549064 SERINC3Q13530 473 aa7.55□□□□□ -1.2
LIMA1-204ENST00000549064 KCNC3Q14003 757 aa7.55□□□□□ -1.2
LIMA1-204ENST00000549064 LPIN1Q14693 890 aa7.55□□□□□ -1.2
LIMA1-204ENST00000549064 DUSP6Q16828 381 aa7.55□□□□□ -1.2
LIMA1-204ENST00000549064 ST3GAL2Q16842 350 aa7.55□□□□□ -1.2
LIMA1-204ENST00000549064 RSPO4Q2I0M5 234 aaPredicted RBP7.55□□□□□ -1.2
LIMA1-204ENST00000549064 SPRED3Q2MJR0 410 aa7.55□□□□□ -1.2
LIMA1-204ENST00000549064 CELF3Q5SZQ8 465 aaKnown RBP7.55□□□□□ -1.2
LIMA1-204ENST00000549064 ARHGEF16Q5VV41 709 aa7.55□□□□□ -1.2
LIMA1-204ENST00000549064 RUFY4Q6ZNE9 571 aa7.55□□□□□ -1.2
LIMA1-204ENST00000549064 RIPOR1Q6ZS17 1223 aa7.55□□□□□ -1.2
LIMA1-204ENST00000549064 CCDC105Q8IYK2 499 aa7.55□□□□□ -1.2
LIMA1-204ENST00000549064 CMTR2Q8IYT2 770 aaKnown RBP7.55□□□□□ -1.2
LIMA1-204ENST00000549064 KBTBD3Q8NAB2 608 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms