RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 TAS1R2Q8TE23 839 aa12.03□□□□□ -0.48
CUX1-212ENST00000547394 RIN2Q8WYP3 895 aaPredicted RBP12.03□□□□□ -0.48
CUX1-212ENST00000547394 COPS5Q92905 334 aa12.03□□□□□ -0.48
CUX1-212ENST00000547394 TMEM206Q9H813 350 aa12.03□□□□□ -0.48
CUX1-212ENST00000547394 FAM53CQ9NYF3 392 aa12.03□□□□□ -0.48
CUX1-212ENST00000547394 ANKFY1Q9P2R3 1169 aa12.03□□□□□ -0.48
CUX1-212ENST00000547394 LRRIQ4A6NIV6 560 aa12.03□□□□□ -0.48
CUX1-212ENST00000547394 TMEM110-MUSTN1A8MSY1 372 aa12.03□□□□□ -0.48
CUX1-212ENST00000547394 SPATA31C2B4DYI2 1134 aa12.03□□□□□ -0.48
CUX1-212ENST00000547394 LYPLA2O95372 231 aa12.03□□□□□ -0.48
CUX1-212ENST00000547394 EDN1P05305 212 aa12.03□□□□□ -0.48
CUX1-212ENST00000547394 GJB1P08034 283 aa12.03□□□□□ -0.48
CUX1-212ENST00000547394 POTEJP0CG39 1038 aa12.03□□□□□ -0.48
CUX1-212ENST00000547394 UBA1P22314 1058 aaKnown RBP12.03□□□□□ -0.48
CUX1-212ENST00000547394 MXI1P50539 228 aa12.03□□□□□ -0.48
CUX1-212ENST00000547394 SMTNP53814 917 aa12.03□□□□□ -0.48
CUX1-212ENST00000547394 POLGP54098 1239 aaPredicted RBP12.03□□□□□ -0.48
CUX1-212ENST00000547394 NCKAP1LP55160 1127 aa12.03□□□□□ -0.48
CUX1-212ENST00000547394 STXBP2Q15833 593 aa12.03□□□□□ -0.48
CUX1-212ENST00000547394 C2CD6Q53TS8 623 aa12.03□□□□□ -0.48
CUX1-212ENST00000547394 NAA35Q5VZE5 725 aa12.03□□□□□ -0.48
CUX1-212ENST00000547394 KLHL7Q8IXQ5 586 aa12.03□□□□□ -0.48
CUX1-212ENST00000547394 TMEM130Q8N3G9 435 aa12.03□□□□□ -0.48
CUX1-212ENST00000547394 ASAP3Q8TDY4 903 aa12.03□□□□□ -0.48
CUX1-212ENST00000547394 ATP6V0A1Q93050 837 aa12.03□□□□□ -0.48
CUX1-212ENST00000547394 PPP1R16BQ96T49 567 aa12.03□□□□□ -0.48
CUX1-212ENST00000547394 MKNK1Q9BUB5 465 aa12.03□□□□□ -0.48
CUX1-212ENST00000547394 AP1M1Q9BXS5 423 aa12.03□□□□□ -0.48
CUX1-212ENST00000547394 STK33Q9BYT3 514 aa12.03□□□□□ -0.48
CUX1-212ENST00000547394 ASCC2Q9H1I8 757 aaPredicted RBP12.03□□□□□ -0.48
CUX1-212ENST00000547394 GINM1Q9NU53 330 aa12.03□□□□□ -0.48
CUX1-212ENST00000547394 RAB21Q9UL25 225 aa12.03□□□□□ -0.48
CUX1-212ENST00000547394 POTEB2H3BUK9 544 aa12.02□□□□□ -0.48
CUX1-212ENST00000547394 CYP26A1O43174 497 aa12.02□□□□□ -0.48
CUX1-212ENST00000547394 ARIH2O95376 493 aa12.02□□□□□ -0.48
CUX1-212ENST00000547394 SGPL1O95470 568 aa12.02□□□□□ -0.48
CUX1-212ENST00000547394 CYP2C8P10632 490 aa12.02□□□□□ -0.48
CUX1-212ENST00000547394 ALDH5A1P51649 535 aaPredicted RBP12.02□□□□□ -0.48
CUX1-212ENST00000547394 TUBB2AQ13885 445 aa12.02□□□□□ -0.48
CUX1-212ENST00000547394 BRD3Q15059 726 aa12.02□□□□□ -0.48
CUX1-212ENST00000547394 GNPTABQ3T906 1256 aa12.02□□□□□ -0.48
CUX1-212ENST00000547394 LBX2Q6XYB7 198 aa12.02□□□□□ -0.48
CUX1-212ENST00000547394 CDR2LQ86X02 465 aaPredicted RBP12.02□□□□□ -0.48
CUX1-212ENST00000547394 TUBB2BQ9BVA1 445 aa12.02□□□□□ -0.48
CUX1-212ENST00000547394 SPATC1LQ9H0A9 340 aa12.02□□□□□ -0.48
CUX1-212ENST00000547394 THAP2Q9H0W7 228 aa12.02□□□□□ -0.48
CUX1-212ENST00000547394 ADARB2Q9NS39 739 aaKnown RBP12.02□□□□□ -0.48
CUX1-212ENST00000547394 H2AFZP0C0S5 128 aa12.02□□□□□ -0.49
CUX1-212ENST00000547394 COPB2P35606 906 aa12.02□□□□□ -0.49
CUX1-212ENST00000547394 PPARDQ03181 441 aa12.02□□□□□ -0.49
CUX1-212ENST00000547394 CKAP4Q07065 602 aaKnown RBP12.02□□□□□ -0.49
CUX1-212ENST00000547394 CASP8Q14790 479 aa12.02□□□□□ -0.49
CUX1-212ENST00000547394 H2AFVQ71UI9 128 aa12.02□□□□□ -0.49
CUX1-212ENST00000547394 INTS8Q75QN2 995 aaKnown RBP12.02□□□□□ -0.49
CUX1-212ENST00000547394 OTUD6AQ7L8S5 288 aa12.02□□□□□ -0.49
CUX1-212ENST00000547394 DAAM2Q86T65 1068 aa12.02□□□□□ -0.49
CUX1-212ENST00000547394 SLC47A2Q86VL8 602 aa12.02□□□□□ -0.49
CUX1-212ENST00000547394 GOLGA5Q8TBA6 731 aa12.02□□□□□ -0.49
CUX1-212ENST00000547394 PPP1R13LQ8WUF5 828 aa12.02□□□□□ -0.49
CUX1-212ENST00000547394 TRAPPC12Q8WVT3 735 aa12.02□□□□□ -0.49
CUX1-212ENST00000547394 TATDN2Q93075 761 aa12.02□□□□□ -0.49
CUX1-212ENST00000547394 SPON1Q9HCB6 807 aa12.02□□□□□ -0.49
CUX1-212ENST00000547394 MAP3K20Q9NYL2 800 aaKnown RBP12.02□□□□□ -0.49
CUX1-212ENST00000547394 L1RE1Q9UN81 338 aa12.02□□□□□ -0.49
CUX1-212ENST00000547394 PARP14Q460N5 1801 aa12.02□□□□□ -0.49
CUX1-212ENST00000547394 SUPT20HL2P0C7V6 817 aa12.01□□□□□ -0.49
CUX1-212ENST00000547394 MAPTP10636 758 aaKnown RBP12.01□□□□□ -0.49
CUX1-212ENST00000547394 EMC2Q15006 297 aa12.01□□□□□ -0.49
CUX1-212ENST00000547394 SPOPLQ6IQ16 392 aa12.01□□□□□ -0.49
CUX1-212ENST00000547394 KCTD17Q8N5Z5 321 aa12.01□□□□□ -0.49
CUX1-212ENST00000547394 KREMEN1Q96MU8 473 aa12.01□□□□□ -0.49
CUX1-212ENST00000547394 KRT12Q99456 494 aa12.01□□□□□ -0.49
CUX1-212ENST00000547394 SYT17Q9BSW7 474 aa12.01□□□□□ -0.49
CUX1-212ENST00000547394 ZNF302Q9NR11 478 aa12.01□□□□□ -0.49
CUX1-212ENST00000547394 ANKEF1Q9NU02 776 aa12.01□□□□□ -0.49
CUX1-212ENST00000547394 UBE4BO95155 1302 aa12.01□□□□□ -0.49
CUX1-212ENST00000547394 ERICH4A6NGS2 130 aa12.01□□□□□ -0.49
CUX1-212ENST00000547394 CEP104O60308 925 aa12.01□□□□□ -0.49
CUX1-212ENST00000547394 CSDE1O75534 798 aaKnown RBP12.01□□□□□ -0.49
CUX1-212ENST00000547394 FERP16591 822 aa12.01□□□□□ -0.49
CUX1-212ENST00000547394 TNFAIP3P21580 790 aa12.01□□□□□ -0.49
CUX1-212ENST00000547394 OAZ1P54368 228 aa12.01□□□□□ -0.49
CUX1-212ENST00000547394 PPP2R5AQ15172 486 aa12.01□□□□□ -0.49
CUX1-212ENST00000547394 MEI1Q5TIA1 1274 aa12.01□□□□□ -0.49
CUX1-212ENST00000547394 AADACL2Q6P093 401 aa12.01□□□□□ -0.49
CUX1-212ENST00000547394 FBXO16Q8IX29 292 aaPredicted RBP12.01□□□□□ -0.49
CUX1-212ENST00000547394 LRRC71Q8N4P6 559 aa12.01□□□□□ -0.49
CUX1-212ENST00000547394 CCDC102AQ96A19 550 aa12.01□□□□□ -0.49
CUX1-212ENST00000547394 CDCA5Q96FF9 252 aa12.01□□□□□ -0.49
CUX1-212ENST00000547394 BTBD6Q96KE9 485 aa12.01□□□□□ -0.49
CUX1-212ENST00000547394 PCYT2Q99447 389 aa12.01□□□□□ -0.49
CUX1-212ENST00000547394 HAPLN2Q9GZV7 340 aa12.01□□□□□ -0.49
CUX1-212ENST00000547394 LUC7LQ9NQ29 371 aaKnown RBP12.01□□□□□ -0.49
CUX1-212ENST00000547394 SYNGAP1Q96PV0 1343 aa12.01□□□□□ -0.49
CUX1-212ENST00000547394 GTPBP10A4D1E9 387 aaKnown RBP12.01□□□□□ -0.49
CUX1-212ENST00000547394 GGPS1O95749 300 aa12.01□□□□□ -0.49
CUX1-212ENST00000547394 FDX1P10109 184 aa12.01□□□□□ -0.49
CUX1-212ENST00000547394 PRKCIP41743 596 aa12.01□□□□□ -0.49
CUX1-212ENST00000547394 NLRP11P59045 1033 aaKnown RBP12.01□□□□□ -0.49
CUX1-212ENST00000547394 ZNF211Q13398 564 aaPredicted RBP12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms