RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 LRRC27Q9C0I9 530 aa9.38□□□□□ -0.91
VPS29-203ENST00000546588 TIMMDC1Q9NPL8 285 aa9.38□□□□□ -0.91
VPS29-203ENST00000546588 RMND1Q9NWS8 449 aa9.38□□□□□ -0.91
VPS29-203ENST00000546588 MAN1B1Q9UKM7 699 aa9.38□□□□□ -0.91
VPS29-203ENST00000546588 EPB41L3Q9Y2J2 1087 aaPredicted RBP9.38□□□□□ -0.91
VPS29-203ENST00000546588 IGSF9BQ9UPX0 1349 aa9.37□□□□□ -0.91
VPS29-203ENST00000546588 IGKV6D-21A0A0A0MT36 114 aa9.37□□□□□ -0.91
VPS29-203ENST00000546588 TTC36A6NLP5 189 aa9.37□□□□□ -0.91
VPS29-203ENST00000546588 TLR2O60603 784 aa9.37□□□□□ -0.91
VPS29-203ENST00000546588 PHACTR2O75167 634 aa9.37□□□□□ -0.91
VPS29-203ENST00000546588 MED24O75448 989 aa9.37□□□□□ -0.91
VPS29-203ENST00000546588 HOXC6P09630 235 aa9.37□□□□□ -0.91
VPS29-203ENST00000546588 CYP2C8P10632 490 aa9.37□□□□□ -0.91
VPS29-203ENST00000546588 XRCC6P12956 609 aaKnown RBP eCLIP9.37□□□□□ -0.91
VPS29-203ENST00000546588 MAPK4P31152 587 aa9.37□□□□□ -0.91
VPS29-203ENST00000546588 PPP1R2P41236 205 aa9.37□□□□□ -0.91
VPS29-203ENST00000546588 ZNF157P51786 506 aaPredicted RBP9.37□□□□□ -0.91
VPS29-203ENST00000546588 JAK3P52333 1124 aa9.37□□□□□ -0.91
VPS29-203ENST00000546588 AMPD3Q01432 767 aa9.37□□□□□ -0.91
VPS29-203ENST00000546588 SREBF2Q12772 1141 aa9.37□□□□□ -0.91
VPS29-203ENST00000546588 STXBP2Q15833 593 aa9.37□□□□□ -0.91
VPS29-203ENST00000546588 ZNF792Q3KQV3 632 aa9.37□□□□□ -0.91
VPS29-203ENST00000546588 DPCR1Q3MIW9 517 aa9.37□□□□□ -0.91
VPS29-203ENST00000546588 GNPTABQ3T906 1256 aa9.37□□□□□ -0.91
VPS29-203ENST00000546588 ANO6Q4KMQ2 910 aa9.37□□□□□ -0.91
VPS29-203ENST00000546588 ZNF658Q5TYW1 1059 aaPredicted RBP9.37□□□□□ -0.91
VPS29-203ENST00000546588 KCNV1Q6PIU1 500 aa9.37□□□□□ -0.91
VPS29-203ENST00000546588 SARM1Q6SZW1 724 aa9.37□□□□□ -0.91
VPS29-203ENST00000546588 C1orf229Q6ZS94 237 aaPredicted RBP9.37□□□□□ -0.91
VPS29-203ENST00000546588 C11orf57Q6ZUT1 292 aaPredicted RBP9.37□□□□□ -0.91
VPS29-203ENST00000546588 KCNK18Q7Z418 384 aa9.37□□□□□ -0.91
VPS29-203ENST00000546588 BTLAQ7Z6A9 289 aa9.37□□□□□ -0.91
VPS29-203ENST00000546588 ANKRD35Q8N283 1001 aa9.37□□□□□ -0.91
VPS29-203ENST00000546588 SYT2Q8N9I0 419 aaPredicted RBP9.37□□□□□ -0.91
VPS29-203ENST00000546588 MLKLQ8NB16 471 aa9.37□□□□□ -0.91
VPS29-203ENST00000546588 GIMAP8Q8ND71 665 aaPredicted RBP9.37□□□□□ -0.91
VPS29-203ENST00000546588 SMARCE1Q969G3 411 aa9.37□□□□□ -0.91
VPS29-203ENST00000546588 DNAJC19Q96DA6 116 aa9.37□□□□□ -0.91
VPS29-203ENST00000546588 MPHOSPH6Q99547 160 aaKnown RBP9.37□□□□□ -0.91
VPS29-203ENST00000546588 PORCNQ9H237 461 aa9.37□□□□□ -0.91
VPS29-203ENST00000546588 DMGDHQ9UI17 866 aaKnown RBP9.37□□□□□ -0.91
VPS29-203ENST00000546588 PCDHGB7Q9Y5F8 929 aa9.37□□□□□ -0.91
VPS29-203ENST00000546588 SYNGAP1Q96PV0 1343 aa9.36□□□□□ -0.91
VPS29-203ENST00000546588 KRBA1A5PL33 1030 aa9.36□□□□□ -0.91
VPS29-203ENST00000546588 SHISA8B8ZZ34 492 aa9.36□□□□□ -0.91
VPS29-203ENST00000546588 GAS7O60861 476 aa9.36□□□□□ -0.91
VPS29-203ENST00000546588 SLITRK3O94933 977 aa9.36□□□□□ -0.91
VPS29-203ENST00000546588 EYA4O95677 639 aa9.36□□□□□ -0.91
VPS29-203ENST00000546588 RPN1P04843 607 aaKnown RBP9.36□□□□□ -0.91
VPS29-203ENST00000546588 FCER1AP12319 257 aa9.36□□□□□ -0.91
VPS29-203ENST00000546588 ZNF165P49910 485 aa9.36□□□□□ -0.91
VPS29-203ENST00000546588 UBXN2AP68543 259 aa9.36□□□□□ -0.91
VPS29-203ENST00000546588 CNTN2Q02246 1040 aa9.36□□□□□ -0.91
VPS29-203ENST00000546588 CUL4BQ13620 913 aa9.36□□□□□ -0.91
VPS29-203ENST00000546588 PLS1Q14651 629 aa9.36□□□□□ -0.91
VPS29-203ENST00000546588 KCTD2Q14681 263 aa9.36□□□□□ -0.91
VPS29-203ENST00000546588 NCAPHQ15003 741 aa9.36□□□□□ -0.91
VPS29-203ENST00000546588 TRIP4Q15650 581 aaPredicted RBP9.36□□□□□ -0.91
VPS29-203ENST00000546588 ZNF394Q53GI3 561 aa9.36□□□□□ -0.91
VPS29-203ENST00000546588 IER5Q5VY09 327 aa9.36□□□□□ -0.91
VPS29-203ENST00000546588 UNC13DQ70J99 1090 aa9.36□□□□□ -0.91
VPS29-203ENST00000546588 NCAPG2Q86XI2 1143 aa9.36□□□□□ -0.91
VPS29-203ENST00000546588 DHX40Q8IX18 779 aaKnown RBP9.36□□□□□ -0.91
VPS29-203ENST00000546588 C4orf19Q8IY42 314 aa9.36□□□□□ -0.91
VPS29-203ENST00000546588 SMCR8Q8TEV9 937 aaPredicted RBP9.36□□□□□ -0.91
VPS29-203ENST00000546588 USP6NLQ92738 828 aa9.36□□□□□ -0.91
VPS29-203ENST00000546588 GJA10Q969M2 543 aa9.36□□□□□ -0.91
VPS29-203ENST00000546588 MMP19Q99542 508 aa9.36□□□□□ -0.91
VPS29-203ENST00000546588 EIF2AK1Q9BQI3 630 aaKnown RBP9.36□□□□□ -0.91
VPS29-203ENST00000546588 TINF2Q9BSI4 451 aa9.36□□□□□ -0.91
VPS29-203ENST00000546588 PAGR1Q9BTK6 254 aa9.36□□□□□ -0.91
VPS29-203ENST00000546588 KATNBL1Q9H079 304 aa9.36□□□□□ -0.91
VPS29-203ENST00000546588 NAT10Q9H0A0 1025 aaKnown RBP9.36□□□□□ -0.91
VPS29-203ENST00000546588 HSD3B7Q9H2F3 369 aa9.36□□□□□ -0.91
VPS29-203ENST00000546588 UNC45AQ9H3U1 944 aa9.36□□□□□ -0.91
VPS29-203ENST00000546588 R3HDMLQ9H3Y0 253 aa9.36□□□□□ -0.91
VPS29-203ENST00000546588 DBR1Q9UK59 544 aaKnown RBP9.36□□□□□ -0.91
VPS29-203ENST00000546588 MYMKA6NI61 221 aa9.35□□□□□ -0.91
VPS29-203ENST00000546588 SLC15A5A6NIM6 579 aa9.35□□□□□ -0.91
VPS29-203ENST00000546588 ASB14A6NK59 587 aa9.35□□□□□ -0.91
VPS29-203ENST00000546588 WDR64B1ANS9 1081 aa9.35□□□□□ -0.91
VPS29-203ENST00000546588 PEX10O60683 326 aa9.35□□□□□ -0.91
VPS29-203ENST00000546588 ATP9AO75110 1047 aa9.35□□□□□ -0.91
VPS29-203ENST00000546588 CCNE2O96020 404 aa9.35□□□□□ -0.91
VPS29-203ENST00000546588 CYP11B2P19099 503 aa9.35□□□□□ -0.91
VPS29-203ENST00000546588 ATP4AP20648 1035 aa9.35□□□□□ -0.91
VPS29-203ENST00000546588 DNAJA1P31689 397 aaKnown RBP9.35□□□□□ -0.91
VPS29-203ENST00000546588 CCT6AP40227 531 aaKnown RBP9.35□□□□□ -0.91
VPS29-203ENST00000546588 ZNF131P52739 623 aa9.35□□□□□ -0.91
VPS29-203ENST00000546588 NCAPH2Q6IBW4 605 aa9.35□□□□□ -0.91
VPS29-203ENST00000546588 SV2BQ7L1I2 683 aa9.35□□□□□ -0.91
VPS29-203ENST00000546588 GRAMD1CQ8IYS0 662 aa9.35□□□□□ -0.91
VPS29-203ENST00000546588 ANKRD13CQ8N6S4 541 aa9.35□□□□□ -0.91
VPS29-203ENST00000546588 ENOX1Q8TC92 643 aaKnown RBP9.35□□□□□ -0.91
VPS29-203ENST00000546588 AFAP1L1Q8TED9 768 aa9.35□□□□□ -0.91
VPS29-203ENST00000546588 TIPINQ9BVW5 301 aa9.35□□□□□ -0.91
VPS29-203ENST00000546588 C12orf49Q9H741 205 aa9.35□□□□□ -0.91
VPS29-203ENST00000546588 CBX8Q9HC52 389 aa9.35□□□□□ -0.91
VPS29-203ENST00000546588 PRKAG2Q9UGJ0 569 aa9.35□□□□□ -0.91
VPS29-203ENST00000546588 PCDHA2Q9Y5H9 948 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms