RNA–Protein interactions for RNA: ENST00000539506.5

SFSWAP-208, Transcript of splicing factor SWAP, humanhuman

TSL 5

Gene SFSWAP, Length 3,149 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-208ENST00000539506 ZNF577Q9BSK1 485 aa13.59□□□□□ -0.23
SFSWAP-208ENST00000539506 STRA6Q9BX79 667 aa13.59□□□□□ -0.23
SFSWAP-208ENST00000539506 DNAJC17Q9NVM6 304 aaKnown RBP13.59□□□□□ -0.23
SFSWAP-208ENST00000539506 TMOD4Q9NZQ9 345 aa13.59□□□□□ -0.23
SFSWAP-208ENST00000539506 PKD2L1Q9P0L9 805 aa13.59□□□□□ -0.23
SFSWAP-208ENST00000539506 ZNF70Q9UC06 446 aaPredicted RBP13.59□□□□□ -0.23
SFSWAP-208ENST00000539506 SLC12A6Q9UHW9 1150 aa13.59□□□□□ -0.23
SFSWAP-208ENST00000539506 HERC5Q9UII4 1024 aaKnown RBP13.59□□□□□ -0.23
SFSWAP-208ENST00000539506 STK24Q9Y6E0 443 aa13.59□□□□□ -0.23
SFSWAP-208ENST00000539506 COL4A5P29400 1685 aa13.59□□□□□ -0.23
SFSWAP-208ENST00000539506 ELF1P32519 619 aa13.59□□□□□ -0.23
SFSWAP-208ENST00000539506 DLG4P78352 724 aa13.59□□□□□ -0.23
SFSWAP-208ENST00000539506 DRAP1Q14919 205 aaPredicted RBP13.59□□□□□ -0.23
SFSWAP-208ENST00000539506 IL31RAQ8NI17 732 aa13.59□□□□□ -0.23
SFSWAP-208ENST00000539506 AGBL1Q96MI9 1066 aa13.59□□□□□ -0.23
SFSWAP-208ENST00000539506 SH2D3AQ9BRG2 576 aa13.59□□□□□ -0.23
SFSWAP-208ENST00000539506 LXNQ9BS40 222 aa13.59□□□□□ -0.23
SFSWAP-208ENST00000539506 TACO1Q9BSH4 297 aaKnown RBP13.59□□□□□ -0.23
SFSWAP-208ENST00000539506 KCNG1Q9UIX4 513 aa13.59□□□□□ -0.23
SFSWAP-208ENST00000539506 DNAJC12Q9UKB3 198 aa13.59□□□□□ -0.23
SFSWAP-208ENST00000539506 FLOT1O75955 427 aa13.58□□□□□ -0.24
SFSWAP-208ENST00000539506 VIMP08670 466 aaKnown RBP13.58□□□□□ -0.24
SFSWAP-208ENST00000539506 ODR4Q5SWX8 454 aa13.58□□□□□ -0.24
SFSWAP-208ENST00000539506 PHLDB3Q6NSJ2 640 aa13.58□□□□□ -0.24
SFSWAP-208ENST00000539506 NT5DC3Q86UY8 548 aa13.58□□□□□ -0.24
SFSWAP-208ENST00000539506 CCDC25Q86WR0 208 aa13.58□□□□□ -0.24
SFSWAP-208ENST00000539506 ARHGEF10LQ9HCE6 1279 aa13.58□□□□□ -0.24
SFSWAP-208ENST00000539506 SOX5P35711 763 aa13.58□□□□□ -0.24
SFSWAP-208ENST00000539506 CLNS1AP54105 237 aaKnown RBP13.58□□□□□ -0.24
SFSWAP-208ENST00000539506 DGKZQ13574 1117 aa13.58□□□□□ -0.24
SFSWAP-208ENST00000539506 NFIL3Q16649 462 aa13.58□□□□□ -0.24
SFSWAP-208ENST00000539506 LDHDQ86WU2 507 aa13.58□□□□□ -0.24
SFSWAP-208ENST00000539506 FAM178BQ8IXR5 827 aa13.58□□□□□ -0.24
SFSWAP-208ENST00000539506 LMO3Q8TAP4 145 aa13.58□□□□□ -0.24
SFSWAP-208ENST00000539506 ACTRT1Q8TDG2 376 aa13.58□□□□□ -0.24
SFSWAP-208ENST00000539506 DBR1Q9UK59 544 aaKnown RBP13.58□□□□□ -0.24
SFSWAP-208ENST00000539506 COL2A1P02458 1487 aaPredicted RBP13.58□□□□□ -0.24
SFSWAP-208ENST00000539506 HIP1RO75146 1068 aa13.57□□□□□ -0.24
SFSWAP-208ENST00000539506 NEBLO76041 1014 aa13.57□□□□□ -0.24
SFSWAP-208ENST00000539506 H2AFZP0C0S5 128 aa13.57□□□□□ -0.24
SFSWAP-208ENST00000539506 KRT13P13646 458 aa13.57□□□□□ -0.24
SFSWAP-208ENST00000539506 CHN1P15882 459 aa13.57□□□□□ -0.24
SFSWAP-208ENST00000539506 H2AFVQ71UI9 128 aa13.57□□□□□ -0.24
SFSWAP-208ENST00000539506 KIF2BQ8N4N8 673 aa13.57□□□□□ -0.24
SFSWAP-208ENST00000539506 GMLQ99445 158 aa13.57□□□□□ -0.24
SFSWAP-208ENST00000539506 WDR11Q9BZH6 1224 aa13.57□□□□□ -0.24
SFSWAP-208ENST00000539506 ERVK-5Q9HDB9 667 aa13.57□□□□□ -0.24
SFSWAP-208ENST00000539506 PPP1R9AQ9ULJ8 1098 aa13.57□□□□□ -0.24
SFSWAP-208ENST00000539506 TMEM150BA6NC51 233 aa13.57□□□□□ -0.24
SFSWAP-208ENST00000539506 BHMG1C9JSJ3 638 aaPredicted RBP13.57□□□□□ -0.24
SFSWAP-208ENST00000539506 IPO5O00410 1097 aaKnown RBP13.57□□□□□ -0.24
SFSWAP-208ENST00000539506 CES2O00748 559 aa13.57□□□□□ -0.24
SFSWAP-208ENST00000539506 NEDD9Q14511 834 aa13.57□□□□□ -0.24
SFSWAP-208ENST00000539506 GRIPAP1Q4V328 841 aa13.57□□□□□ -0.24
SFSWAP-208ENST00000539506 GKAP1Q5VSY0 366 aaPredicted RBP13.57□□□□□ -0.24
SFSWAP-208ENST00000539506 DCAF12L1Q5VU92 463 aa13.57□□□□□ -0.24
SFSWAP-208ENST00000539506 PRCCQ92733 491 aaPredicted RBP13.57□□□□□ -0.24
SFSWAP-208ENST00000539506 ARHGEF26Q96DR7 871 aa13.57□□□□□ -0.24
SFSWAP-208ENST00000539506 HOOK2Q96ED9 719 aa13.57□□□□□ -0.24
SFSWAP-208ENST00000539506 STAMBPL1Q96FJ0 436 aa13.57□□□□□ -0.24
SFSWAP-208ENST00000539506 NACC1Q96RE7 527 aa13.57□□□□□ -0.24
SFSWAP-208ENST00000539506 STK33Q9BYT3 514 aa13.57□□□□□ -0.24
SFSWAP-208ENST00000539506 SYNPO2Q9UMS6 1093 aa13.57□□□□□ -0.24
SFSWAP-208ENST00000539506 ZNF536O15090 1300 aa13.57□□□□□ -0.24
SFSWAP-208ENST00000539506 PGRMC1O00264 195 aaKnown RBP13.57□□□□□ -0.24
SFSWAP-208ENST00000539506 GBP2P32456 591 aaPredicted RBP13.57□□□□□ -0.24
SFSWAP-208ENST00000539506 STAT1P42224 750 aa13.57□□□□□ -0.24
SFSWAP-208ENST00000539506 SPP2Q13103 211 aa13.57□□□□□ -0.24
SFSWAP-208ENST00000539506 FLAD1Q8NFF5 587 aa13.57□□□□□ -0.24
SFSWAP-208ENST00000539506 SLC35G2Q8TBE7 412 aa13.57□□□□□ -0.24
SFSWAP-208ENST00000539506 FAM151AQ8WW52 585 aa13.57□□□□□ -0.24
SFSWAP-208ENST00000539506 ELMO3Q96BJ8 720 aa13.57□□□□□ -0.24
SFSWAP-208ENST00000539506 HES6Q96HZ4 224 aa13.57□□□□□ -0.24
SFSWAP-208ENST00000539506 PRMT1Q99873 361 aaKnown RBP13.57□□□□□ -0.24
SFSWAP-208ENST00000539506 INTS2Q9H0H0 1204 aaKnown RBP13.57□□□□□ -0.24
SFSWAP-208ENST00000539506 AZI2Q9H6S1 392 aa13.57□□□□□ -0.24
SFSWAP-208ENST00000539506 PTPN22Q9Y2R2 807 aa13.57□□□□□ -0.24
SFSWAP-208ENST00000539506 CEP83Q9Y592 693 aa13.57□□□□□ -0.24
SFSWAP-208ENST00000539506 NFIBO00712 420 aa13.56□□□□□ -0.24
SFSWAP-208ENST00000539506 DHX15O43143 795 aaKnown RBP13.56□□□□□ -0.24
SFSWAP-208ENST00000539506 FERP16591 822 aa13.56□□□□□ -0.24
SFSWAP-208ENST00000539506 FGFR4P22455 802 aa13.56□□□□□ -0.24
SFSWAP-208ENST00000539506 PPP2R5AQ15172 486 aa13.56□□□□□ -0.24
SFSWAP-208ENST00000539506 RSBN1LQ6PCB5 846 aaPredicted RBP13.56□□□□□ -0.24
SFSWAP-208ENST00000539506 MREGQ8N565 214 aa13.56□□□□□ -0.24
SFSWAP-208ENST00000539506 PCIF1Q9H4Z3 704 aa13.56□□□□□ -0.24
SFSWAP-208ENST00000539506 MCM8Q9UJA3 840 aa13.56□□□□□ -0.24
SFSWAP-208ENST00000539506 COG5Q9UP83 839 aa13.56□□□□□ -0.24
SFSWAP-208ENST00000539506 STK38LQ9Y2H1 464 aa13.56□□□□□ -0.24
SFSWAP-208ENST00000539506 A8MUI8 341 aa13.56□□□□□ -0.24
SFSWAP-208ENST00000539506 FOXN3O00409 490 aaPredicted RBP13.56□□□□□ -0.24
SFSWAP-208ENST00000539506 MYBL1P10243 752 aa13.56□□□□□ -0.24
SFSWAP-208ENST00000539506 MYO1EQ12965 1108 aa13.56□□□□□ -0.24
SFSWAP-208ENST00000539506 ARHGAP44Q17R89 818 aa13.56□□□□□ -0.24
SFSWAP-208ENST00000539506 TMC3Q7Z5M5 1100 aa13.56□□□□□ -0.24
SFSWAP-208ENST00000539506 LRRC34Q8IZ02 419 aa13.56□□□□□ -0.24
SFSWAP-208ENST00000539506 RASGEF1CQ8N431 466 aa13.56□□□□□ -0.24
SFSWAP-208ENST00000539506 ARFGAP2Q8N6H7 521 aa13.56□□□□□ -0.24
SFSWAP-208ENST00000539506 CNKSR1Q969H4 720 aa13.56□□□□□ -0.24
SFSWAP-208ENST00000539506 LRRC45Q96CN5 670 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms