RNA–Protein interactions for RNA: ENST00000539232.1

LMO3-220, Transcript of LIM domain only 3, humanhuman

TSL 5

Gene LMO3, Length 580 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-220ENST00000539232 SLC24A5Q71RS6 500 aa8.06□□□□□ -1.12
LMO3-220ENST00000539232 CDR2LQ86X02 465 aaPredicted RBP8.06□□□□□ -1.12
LMO3-220ENST00000539232 ECHDC2Q86YB7 292 aa8.06□□□□□ -1.12
LMO3-220ENST00000539232 NPAS4Q8IUM7 802 aa8.06□□□□□ -1.12
LMO3-220ENST00000539232 FIBCD1Q8N539 461 aa8.06□□□□□ -1.12
LMO3-220ENST00000539232 TNPO1Q92973 898 aaKnown RBP8.06□□□□□ -1.12
LMO3-220ENST00000539232 CLP1Q92989 425 aaKnown RBP8.06□□□□□ -1.12
LMO3-220ENST00000539232 CHAMP1Q96JM3 812 aa8.06□□□□□ -1.12
LMO3-220ENST00000539232 SCLT1Q96NL6 688 aa8.06□□□□□ -1.12
LMO3-220ENST00000539232 PNMA5Q96PV4 448 aa8.06□□□□□ -1.12
LMO3-220ENST00000539232 NAP1L4Q99733 375 aaKnown RBP8.06□□□□□ -1.12
LMO3-220ENST00000539232 KIFC3Q9BVG8 833 aa8.06□□□□□ -1.12
LMO3-220ENST00000539232 CXCL16Q9H2A7 254 aa8.06□□□□□ -1.12
LMO3-220ENST00000539232 RNF39Q9H2S5 420 aa8.06□□□□□ -1.12
LMO3-220ENST00000539232 CEP131Q9UPN4 1083 aa8.06□□□□□ -1.12
LMO3-220ENST00000539232 COL4A3BPQ9Y5P4 624 aa8.06□□□□□ -1.12
LMO3-220ENST00000539232 E9PMD0 336 aa8.05□□□□□ -1.12
LMO3-220ENST00000539232 H3BNC9 293 aa8.05□□□□□ -1.12
LMO3-220ENST00000539232 MBTPS2O43462 519 aa8.05□□□□□ -1.12
LMO3-220ENST00000539232 TMOD1P28289 359 aa8.05□□□□□ -1.12
LMO3-220ENST00000539232 CTNNB1P35222 781 aa8.05□□□□□ -1.12
LMO3-220ENST00000539232 CCT6AP40227 531 aaKnown RBP8.05□□□□□ -1.12
LMO3-220ENST00000539232 RFC5P40937 340 aa8.05□□□□□ -1.12
LMO3-220ENST00000539232 FXR2P51116 673 aaKnown RBP eCLIP8.05□□□□□ -1.12
LMO3-220ENST00000539232 RBM10P98175 930 aaKnown RBP8.05□□□□□ -1.12
LMO3-220ENST00000539232 RESTQ13127 1097 aa8.05□□□□□ -1.12
LMO3-220ENST00000539232 GPM6BQ13491 265 aa8.05□□□□□ -1.12
LMO3-220ENST00000539232 GNL2Q13823 731 aaKnown RBP8.05□□□□□ -1.12
LMO3-220ENST00000539232 CAPSQ13938 189 aa8.05□□□□□ -1.12
LMO3-220ENST00000539232 BECN1Q14457 450 aa8.05□□□□□ -1.12
LMO3-220ENST00000539232 TCEAL5Q5H9L2 206 aa8.05□□□□□ -1.12
LMO3-220ENST00000539232 LARP1BQ659C4 914 aaKnown RBP8.05□□□□□ -1.12
LMO3-220ENST00000539232 USP49Q70CQ1 688 aa8.05□□□□□ -1.12
LMO3-220ENST00000539232 MTERF4Q7Z6M4 381 aaKnown RBP8.05□□□□□ -1.12
LMO3-220ENST00000539232 DAW1Q8N136 415 aa8.05□□□□□ -1.12
LMO3-220ENST00000539232 IGSF22Q8N9C0 903 aa8.05□□□□□ -1.12
LMO3-220ENST00000539232 KLHL23Q8NBE8 558 aa8.05□□□□□ -1.12
LMO3-220ENST00000539232 RNF149Q8NC42 400 aa8.05□□□□□ -1.12
LMO3-220ENST00000539232 FEZF2Q8TBJ5 459 aa8.05□□□□□ -1.12
LMO3-220ENST00000539232 BCL7CQ8WUZ0 217 aaPredicted RBP8.05□□□□□ -1.12
LMO3-220ENST00000539232 CPB2Q96IY4 423 aa8.05□□□□□ -1.12
LMO3-220ENST00000539232 POLR3CQ9BUI4 534 aaPredicted RBP8.05□□□□□ -1.12
LMO3-220ENST00000539232 RUSC1Q9BVN2 902 aa8.05□□□□□ -1.12
LMO3-220ENST00000539232 FTHL17Q9BXU8 183 aa8.05□□□□□ -1.12
LMO3-220ENST00000539232 EIF2AQ9BY44 585 aaKnown RBP8.05□□□□□ -1.12
LMO3-220ENST00000539232 GCOM2Q9BZD3 368 aaPredicted RBP8.05□□□□□ -1.12
LMO3-220ENST00000539232 POLR3FQ9H1D9 316 aaPredicted RBP8.05□□□□□ -1.12
LMO3-220ENST00000539232 CWH43Q9H720 699 aa8.05□□□□□ -1.12
LMO3-220ENST00000539232 ANKEF1Q9NU02 776 aa8.05□□□□□ -1.12
LMO3-220ENST00000539232 TYW1Q9NV66 732 aaKnown RBP8.05□□□□□ -1.12
LMO3-220ENST00000539232 CLDND1Q9NY35 253 aa8.05□□□□□ -1.12
LMO3-220ENST00000539232 PLAGL2Q9UPG8 496 aa8.05□□□□□ -1.12
LMO3-220ENST00000539232 MTMR6Q9Y217 621 aa8.05□□□□□ -1.12
LMO3-220ENST00000539232 HES2Q9Y543 173 aa8.05□□□□□ -1.12
LMO3-220ENST00000539232 PCDHB7Q9Y5E2 793 aa8.05□□□□□ -1.12
LMO3-220ENST00000539232 CLIC4Q9Y696 253 aa8.05□□□□□ -1.12
LMO3-220ENST00000539232 UNC79Q9P2D8 2635 aa8.04□□□□□ -1.12
LMO3-220ENST00000539232 MYH7BA7E2Y1 1941 aa8.04□□□□□ -1.12
LMO3-220ENST00000539232 NPHP3-ACAD11A0A0J9YXS1 232 aa8.04□□□□□ -1.12
LMO3-220ENST00000539232 A0A0U1RQF3 1178 aa8.04□□□□□ -1.12
LMO3-220ENST00000539232 VPS37CA5D8V6 355 aaPredicted RBP8.04□□□□□ -1.12
LMO3-220ENST00000539232 H3BQV1 296 aa8.04□□□□□ -1.12
LMO3-220ENST00000539232 LINC01565O15544 149 aa8.04□□□□□ -1.12
LMO3-220ENST00000539232 TSPAN1O60635 241 aa8.04□□□□□ -1.12
LMO3-220ENST00000539232 RPLP2P05387 115 aaKnown RBP8.04□□□□□ -1.12
LMO3-220ENST00000539232 SYT1P21579 422 aa8.04□□□□□ -1.12
LMO3-220ENST00000539232 IGFBP6P24592 240 aaPredicted RBP8.04□□□□□ -1.12
LMO3-220ENST00000539232 RPA1P27694 616 aa8.04□□□□□ -1.12
LMO3-220ENST00000539232 LTBRP36941 435 aa8.04□□□□□ -1.12
LMO3-220ENST00000539232 TRAPPC10P48553 1259 aa8.04□□□□□ -1.12
LMO3-220ENST00000539232 DNM2P50570 870 aa8.04□□□□□ -1.12
LMO3-220ENST00000539232 PTENP60484 403 aa8.04□□□□□ -1.12
LMO3-220ENST00000539232 ATP2C1P98194 919 aaPredicted RBP8.04□□□□□ -1.12
LMO3-220ENST00000539232 MBTD1Q05BQ5 628 aa8.04□□□□□ -1.12
LMO3-220ENST00000539232 DLX2Q07687 328 aaPredicted RBP8.04□□□□□ -1.12
LMO3-220ENST00000539232 SMAD4Q13485 552 aaKnown RBP8.04□□□□□ -1.12
LMO3-220ENST00000539232 SPECC1Q5M775 1068 aa8.04□□□□□ -1.12
LMO3-220ENST00000539232 FOXD4L5Q5VV16 416 aaPredicted RBP8.04□□□□□ -1.12
LMO3-220ENST00000539232 PADI6Q6TGC4 694 aa8.04□□□□□ -1.12
LMO3-220ENST00000539232 CATSPER4Q7RTX7 472 aa8.04□□□□□ -1.12
LMO3-220ENST00000539232 ADGRD2Q7Z7M1 963 aa8.04□□□□□ -1.12
LMO3-220ENST00000539232 TMEM173Q86WV6 379 aaPredicted RBP8.04□□□□□ -1.12
LMO3-220ENST00000539232 KIAA2013Q8IYS2 634 aa8.04□□□□□ -1.12
LMO3-220ENST00000539232 CMTR2Q8IYT2 770 aaKnown RBP8.04□□□□□ -1.12
LMO3-220ENST00000539232 TMEM130Q8N3G9 435 aa8.04□□□□□ -1.12
LMO3-220ENST00000539232 SPRYD3Q8NCJ5 442 aa8.04□□□□□ -1.12
LMO3-220ENST00000539232 SMG8Q8ND04 991 aaKnown RBP8.04□□□□□ -1.12
LMO3-220ENST00000539232 SPPL3Q8TCT6 385 aa8.04□□□□□ -1.12
LMO3-220ENST00000539232 HELQQ8TDG4 1101 aa8.04□□□□□ -1.12
LMO3-220ENST00000539232 PSPC1Q8WXF1 523 aaKnown RBP8.04□□□□□ -1.12
LMO3-220ENST00000539232 FOXD4L4Q8WXT5 416 aaPredicted RBP8.04□□□□□ -1.12
LMO3-220ENST00000539232 SLC7A3Q8WY07 619 aa8.04□□□□□ -1.12
LMO3-220ENST00000539232 DDX19AQ9NUU7 478 aaKnown RBP8.04□□□□□ -1.12
LMO3-220ENST00000539232 TMEM161AQ9NX61 479 aa8.04□□□□□ -1.12
LMO3-220ENST00000539232 CACNG4Q9UBN1 327 aa8.04□□□□□ -1.12
LMO3-220ENST00000539232 LRWD1Q9UFC0 647 aa8.04□□□□□ -1.12
LMO3-220ENST00000539232 KIAA1024Q9UPX6 916 aa8.04□□□□□ -1.12
LMO3-220ENST00000539232 PIN4Q9Y237 131 aaKnown RBP8.04□□□□□ -1.12
LMO3-220ENST00000539232 TANC1Q9C0D5 1861 aa8.04□□□□□ -1.12
LMO3-220ENST00000539232 TRIP12Q14669 1992 aaPredicted RBP8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 82.3 ms