RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 CRACR2BQ8N4Y2 399 aaPredicted RBP13.3□□□□□ -0.28
USP3-203ENST00000538686 METTL13Q8N6R0 699 aa13.3□□□□□ -0.28
USP3-203ENST00000538686 SPZ1Q9BXG8 430 aa13.3□□□□□ -0.28
USP3-203ENST00000538686 MAGEF1Q9HAY2 307 aa13.3□□□□□ -0.28
USP3-203ENST00000538686 LY9Q9HBG7 655 aa13.3□□□□□ -0.28
USP3-203ENST00000538686 EURLQ9NYK6 297 aa13.3□□□□□ -0.28
USP3-203ENST00000538686 CLIC5Q9NZA1 410 aa13.3□□□□□ -0.28
USP3-203ENST00000538686 CEP72Q9P209 647 aa13.3□□□□□ -0.28
USP3-203ENST00000538686 DMTF1Q9Y222 760 aa13.3□□□□□ -0.28
USP3-203ENST00000538686 ACTL7BQ9Y614 415 aa13.3□□□□□ -0.28
USP3-203ENST00000538686 WNK3Q9BYP7 1800 aa13.29□□□□□ -0.28
USP3-203ENST00000538686 STK10O94804 968 aaKnown RBP13.29□□□□□ -0.28
USP3-203ENST00000538686 TAC1P20366 129 aa13.29□□□□□ -0.28
USP3-203ENST00000538686 NEK3P51956 506 aa13.29□□□□□ -0.28
USP3-203ENST00000538686 ARFIP2P53365 341 aa13.29□□□□□ -0.28
USP3-203ENST00000538686 ASPHQ12797 758 aa13.29□□□□□ -0.28
USP3-203ENST00000538686 MED21Q13503 144 aa13.29□□□□□ -0.28
USP3-203ENST00000538686 MOGSQ13724 837 aa13.29□□□□□ -0.28
USP3-203ENST00000538686 TMEM67Q5HYA8 995 aa13.29□□□□□ -0.28
USP3-203ENST00000538686 ZNF280DQ6N043 979 aa13.29□□□□□ -0.28
USP3-203ENST00000538686 SAPCD2Q86UD0 394 aa13.29□□□□□ -0.28
USP3-203ENST00000538686 SFR1Q86XK3 245 aa13.29□□□□□ -0.28
USP3-203ENST00000538686 IGDCC4Q8TDY8 1250 aa13.29□□□□□ -0.28
USP3-203ENST00000538686 MCUR1Q96AQ8 359 aa13.29□□□□□ -0.28
USP3-203ENST00000538686 ZFRQ96KR1 1074 aaKnown RBP13.29□□□□□ -0.28
USP3-203ENST00000538686 EYA1Q99502 592 aa13.29□□□□□ -0.28
USP3-203ENST00000538686 KCNK9Q9NPC2 374 aa13.29□□□□□ -0.28
USP3-203ENST00000538686 QPCTLQ9NXS2 382 aa13.29□□□□□ -0.28
USP3-203ENST00000538686 PLK2Q9NYY3 685 aa13.29□□□□□ -0.28
USP3-203ENST00000538686 DKK3Q9UBP4 350 aa13.29□□□□□ -0.28
USP3-203ENST00000538686 ZFP69BQ9UJL9 534 aa13.29□□□□□ -0.28
USP3-203ENST00000538686 ATP6V0A2Q9Y487 856 aa13.29□□□□□ -0.28
USP3-203ENST00000538686 TTLL3Q9Y4R7 772 aa13.29□□□□□ -0.28
USP3-203ENST00000538686 METP08581 1390 aa13.29□□□□□ -0.28
USP3-203ENST00000538686 SPECC1L-ADORA2AF8WAN1 911 aa13.28□□□□□ -0.28
USP3-203ENST00000538686 EIF3FO00303 357 aaPredicted RBP13.28□□□□□ -0.28
USP3-203ENST00000538686 FOXP2O15409 715 aa13.28□□□□□ -0.28
USP3-203ENST00000538686 PHF2O75151 1096 aa13.28□□□□□ -0.28
USP3-203ENST00000538686 IFIT1P09914 478 aaKnown RBP13.28□□□□□ -0.28
USP3-203ENST00000538686 ZBTB48P10074 688 aaPredicted RBP13.28□□□□□ -0.28
USP3-203ENST00000538686 HOXA7P31268 230 aaPredicted RBP13.28□□□□□ -0.28
USP3-203ENST00000538686 LONP1P36776 959 aaKnown RBP13.28□□□□□ -0.28
USP3-203ENST00000538686 TRAPPC10P48553 1259 aa13.28□□□□□ -0.28
USP3-203ENST00000538686 TMED10P49755 219 aaKnown RBP13.28□□□□□ -0.28
USP3-203ENST00000538686 RELAQ04206 551 aa13.28□□□□□ -0.28
USP3-203ENST00000538686 KIAA1755Q5JYT7 1200 aa13.28□□□□□ -0.28
USP3-203ENST00000538686 C6orf163Q5TEZ5 329 aa13.28□□□□□ -0.28
USP3-203ENST00000538686 TREML1Q86YW5 311 aa13.28□□□□□ -0.28
USP3-203ENST00000538686 FAM133AQ8N9E0 248 aa13.28□□□□□ -0.28
USP3-203ENST00000538686 SPATA5Q8NB90 893 aa13.28□□□□□ -0.28
USP3-203ENST00000538686 APPBP2Q92624 585 aa13.28□□□□□ -0.28
USP3-203ENST00000538686 CADM1Q9BY67 442 aaKnown RBP13.28□□□□□ -0.28
USP3-203ENST00000538686 NDE1Q9NXR1 346 aa13.28□□□□□ -0.28
USP3-203ENST00000538686 TELO2Q9Y4R8 837 aa13.28□□□□□ -0.28
USP3-203ENST00000538686 RIMBP3CA6NJZ7 1639 aa13.28□□□□□ -0.28
USP3-203ENST00000538686 RIMBP3BA6NNM3 1639 aa13.28□□□□□ -0.28
USP3-203ENST00000538686 RIMBP3Q9UFD9 1639 aa13.28□□□□□ -0.28
USP3-203ENST00000538686 PODXLO00592 558 aa13.28□□□□□ -0.28
USP3-203ENST00000538686 HGSO14964 777 aaPredicted RBP13.28□□□□□ -0.28
USP3-203ENST00000538686 GSTT2P0CG29 244 aa13.28□□□□□ -0.28
USP3-203ENST00000538686 GSTT2BP0CG30 244 aa13.28□□□□□ -0.28
USP3-203ENST00000538686 CA8P35219 290 aa13.28□□□□□ -0.28
USP3-203ENST00000538686 AP2B1P63010 937 aa13.28□□□□□ -0.28
USP3-203ENST00000538686 RTN1Q16799 776 aa13.28□□□□□ -0.28
USP3-203ENST00000538686 CERKLQ49MI3 558 aaPredicted RBP13.28□□□□□ -0.28
USP3-203ENST00000538686 ARL6IP4Q66PJ3 421 aaKnown RBP13.28□□□□□ -0.28
USP3-203ENST00000538686 RFWD3Q6PCD5 774 aa13.28□□□□□ -0.28
USP3-203ENST00000538686 BORAQ6PGQ7 559 aa13.28□□□□□ -0.28
USP3-203ENST00000538686 DSTYKQ6XUX3 929 aa13.28□□□□□ -0.28
USP3-203ENST00000538686 MIGA2Q7L4E1 593 aa13.28□□□□□ -0.28
USP3-203ENST00000538686 TMC4Q7Z404 712 aa13.28□□□□□ -0.28
USP3-203ENST00000538686 SATL1Q86VE3 508 aa13.28□□□□□ -0.28
USP3-203ENST00000538686 ANKRD42Q8N9B4 389 aa13.28□□□□□ -0.28
USP3-203ENST00000538686 LRRC57Q8N9N7 239 aa13.28□□□□□ -0.28
USP3-203ENST00000538686 CEP70Q8NHQ1 597 aa13.28□□□□□ -0.28
USP3-203ENST00000538686 PPP1R14CQ8TAE6 165 aa13.28□□□□□ -0.28
USP3-203ENST00000538686 GDAP1Q8TB36 358 aa13.28□□□□□ -0.28
USP3-203ENST00000538686 PRICKLE1Q96MT3 831 aaPredicted RBP13.28□□□□□ -0.28
USP3-203ENST00000538686 DRC3Q9H069 523 aa13.28□□□□□ -0.28
USP3-203ENST00000538686 METTL5Q9NRN9 209 aaKnown RBP13.28□□□□□ -0.28
USP3-203ENST00000538686 EMILIN3Q9NT22 766 aa13.28□□□□□ -0.28
USP3-203ENST00000538686 DBR1Q9UK59 544 aaKnown RBP13.28□□□□□ -0.28
USP3-203ENST00000538686 FAF1Q9UNN5 650 aaPredicted RBP13.28□□□□□ -0.28
USP3-203ENST00000538686 TSC22D4Q9Y3Q8 395 aa13.28□□□□□ -0.28
USP3-203ENST00000538686 SLIT3O75094 1523 aa13.27□□□□□ -0.28
USP3-203ENST00000538686 GOLGA8TH3BQL2 631 aa13.27□□□□□ -0.28
USP3-203ENST00000538686 VILLO15195 856 aa13.27□□□□□ -0.28
USP3-203ENST00000538686 GSC2O15499 205 aa13.27□□□□□ -0.28
USP3-203ENST00000538686 KDM1AO60341 852 aa13.27□□□□□ -0.28
USP3-203ENST00000538686 RNASEH1O60930 286 aaKnown RBP13.27□□□□□ -0.28
USP3-203ENST00000538686 ZBED1O96006 694 aa13.27□□□□□ -0.28
USP3-203ENST00000538686 GOLGA8HP0CJ92 632 aa13.27□□□□□ -0.28
USP3-203ENST00000538686 BRAFP15056 766 aa13.27□□□□□ -0.28
USP3-203ENST00000538686 TCF7P36402 384 aaPredicted RBP13.27□□□□□ -0.28
USP3-203ENST00000538686 PLTPP55058 493 aa13.27□□□□□ -0.28
USP3-203ENST00000538686 LPIN1Q14693 890 aa13.27□□□□□ -0.28
USP3-203ENST00000538686 PPP2R5BQ15173 497 aa13.27□□□□□ -0.28
USP3-203ENST00000538686 TTC38Q5R3I4 469 aa13.27□□□□□ -0.28
USP3-203ENST00000538686 SPTY2D1Q68D10 685 aaPredicted RBP13.27□□□□□ -0.28
USP3-203ENST00000538686 PACS1Q6VY07 963 aa13.27□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms