RNA–Protein interactions for RNA: ENST00000535717.1

CHD4-203, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 2

Gene CHD4, Length 660 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-203ENST00000535717 GAP43P17677 238 aa13.29□□□□□ -0.28
CHD4-203ENST00000535717 ARF4P18085 180 aaPredicted RBP13.29□□□□□ -0.28
CHD4-203ENST00000535717 LIG1P18858 919 aa13.29□□□□□ -0.28
CHD4-203ENST00000535717 NCKAP1LP55160 1127 aa13.29□□□□□ -0.28
CHD4-203ENST00000535717 ASIC1P78348 528 aa13.29□□□□□ -0.28
CHD4-203ENST00000535717 CUL4BQ13620 913 aa13.29□□□□□ -0.28
CHD4-203ENST00000535717 MAPK6Q16659 721 aa13.29□□□□□ -0.28
CHD4-203ENST00000535717 SFR1Q86XK3 245 aa13.29□□□□□ -0.28
CHD4-203ENST00000535717 MYOCDQ8IZQ8 938 aa13.29□□□□□ -0.28
CHD4-203ENST00000535717 CNNM3Q8NE01 707 aa13.29□□□□□ -0.28
CHD4-203ENST00000535717 PHOSPHO2Q8TCD6 241 aa13.29□□□□□ -0.28
CHD4-203ENST00000535717 CPB2Q96IY4 423 aa13.29□□□□□ -0.28
CHD4-203ENST00000535717 SLC9A7Q96T83 725 aa13.29□□□□□ -0.28
CHD4-203ENST00000535717 TMEM134Q9H6X4 195 aa13.29□□□□□ -0.28
CHD4-203ENST00000535717 PANK4Q9NVE7 773 aa13.29□□□□□ -0.28
CHD4-203ENST00000535717 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.28□□□□□ -0.28
CHD4-203ENST00000535717 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.28□□□□□ -0.28
CHD4-203ENST00000535717 ACKR2O00590 384 aa13.28□□□□□ -0.28
CHD4-203ENST00000535717 NR1I2O75469 434 aa13.28□□□□□ -0.28
CHD4-203ENST00000535717 NMT1P30419 496 aaKnown RBP13.28□□□□□ -0.28
CHD4-203ENST00000535717 AXLP30530 894 aa13.28□□□□□ -0.28
CHD4-203ENST00000535717 SARSP49591 514 aaKnown RBP13.28□□□□□ -0.28
CHD4-203ENST00000535717 UBE2HP62256 183 aa13.28□□□□□ -0.28
CHD4-203ENST00000535717 FAM189BP81408 668 aa13.28□□□□□ -0.28
CHD4-203ENST00000535717 NCBP1Q09161 790 aaKnown RBP13.28□□□□□ -0.28
CHD4-203ENST00000535717 PRPF4BQ13523 1007 aaKnown RBP13.28□□□□□ -0.28
CHD4-203ENST00000535717 LRIT3Q3SXY7 679 aa13.28□□□□□ -0.28
CHD4-203ENST00000535717 HERC4Q5GLZ8 1057 aaPredicted RBP13.28□□□□□ -0.28
CHD4-203ENST00000535717 UBXN11Q5T124 520 aa13.28□□□□□ -0.28
CHD4-203ENST00000535717 NT5DC1Q5TFE4 455 aa13.28□□□□□ -0.28
CHD4-203ENST00000535717 TWF2Q6IBS0 349 aaKnown RBP13.28□□□□□ -0.28
CHD4-203ENST00000535717 FAM117BQ6P1L5 589 aa13.28□□□□□ -0.28
CHD4-203ENST00000535717 SLC24A5Q71RS6 500 aa13.28□□□□□ -0.28
CHD4-203ENST00000535717 HAUS6Q7Z4H7 955 aa13.28□□□□□ -0.28
CHD4-203ENST00000535717 HERC6Q8IVU3 1022 aa13.28□□□□□ -0.28
CHD4-203ENST00000535717 FAM178BQ8IXR5 827 aa13.28□□□□□ -0.28
CHD4-203ENST00000535717 CCDC65Q8IXS2 484 aa13.28□□□□□ -0.28
CHD4-203ENST00000535717 CRIPAKQ8N1N5 446 aa13.28□□□□□ -0.28
CHD4-203ENST00000535717 TOP1MTQ969P6 601 aa13.28□□□□□ -0.28
CHD4-203ENST00000535717 PRIMPOLQ96LW4 560 aa13.28□□□□□ -0.28
CHD4-203ENST00000535717 C1orf112Q9NSG2 853 aa13.28□□□□□ -0.28
CHD4-203ENST00000535717 DACT1Q9NYF0 836 aa13.28□□□□□ -0.28
CHD4-203ENST00000535717 SEL1LQ9UBV2 794 aa13.28□□□□□ -0.28
CHD4-203ENST00000535717 PHLPP2Q6ZVD8 1323 aa13.28□□□□□ -0.28
CHD4-203ENST00000535717 CNTNAP2Q9UHC6 1331 aa13.28□□□□□ -0.28
CHD4-203ENST00000535717 TTC3P53804 2025 aa13.28□□□□□ -0.28
CHD4-203ENST00000535717 A0A1B0GUA9 196 aa13.27□□□□□ -0.29
CHD4-203ENST00000535717 H0YCG3 227 aa13.27□□□□□ -0.29
CHD4-203ENST00000535717 K7ENM7 598 aa13.27□□□□□ -0.29
CHD4-203ENST00000535717 GTPBP6O43824 516 aaPredicted RBP13.27□□□□□ -0.29
CHD4-203ENST00000535717 UPP2O95045 317 aa13.27□□□□□ -0.29
CHD4-203ENST00000535717 GJB5O95377 273 aa13.27□□□□□ -0.29
CHD4-203ENST00000535717 PRR29P0C7W0 189 aa13.27□□□□□ -0.29
CHD4-203ENST00000535717 IBSPP21815 317 aaPredicted RBP13.27□□□□□ -0.29
CHD4-203ENST00000535717 RABGGTBP53611 331 aa13.27□□□□□ -0.29
CHD4-203ENST00000535717 COASYQ13057 564 aa13.27□□□□□ -0.29
CHD4-203ENST00000535717 ZC2HC1CQ53FD0 456 aaPredicted RBP13.27□□□□□ -0.29
CHD4-203ENST00000535717 NOTUMQ6P988 496 aa13.27□□□□□ -0.29
CHD4-203ENST00000535717 UNC13DQ70J99 1090 aa13.27□□□□□ -0.29
CHD4-203ENST00000535717 ZNF720Q7Z2F6 126 aa13.27□□□□□ -0.29
CHD4-203ENST00000535717 CDR2LQ86X02 465 aaPredicted RBP13.27□□□□□ -0.29
CHD4-203ENST00000535717 ECHDC2Q86YB7 292 aa13.27□□□□□ -0.29
CHD4-203ENST00000535717 NPAS4Q8IUM7 802 aa13.27□□□□□ -0.29
CHD4-203ENST00000535717 KCNN1Q92952 543 aa13.27□□□□□ -0.29
CHD4-203ENST00000535717 HPS3Q969F9 1004 aa13.27□□□□□ -0.29
CHD4-203ENST00000535717 GBP4Q96PP9 640 aa13.27□□□□□ -0.29
CHD4-203ENST00000535717 TRAIPQ9BWF2 469 aa13.27□□□□□ -0.29
CHD4-203ENST00000535717 ST6GALNAC4Q9H4F1 302 aa13.27□□□□□ -0.29
CHD4-203ENST00000535717 MRPL44Q9H9J2 332 aaKnown RBP13.27□□□□□ -0.29
CHD4-203ENST00000535717 OLFML3Q9NRN5 406 aa13.27□□□□□ -0.29
CHD4-203ENST00000535717 TBC1D7Q9P0N9 293 aa13.27□□□□□ -0.29
CHD4-203ENST00000535717 A0A0U1RQF3 1178 aa13.26□□□□□ -0.29
CHD4-203ENST00000535717 PVALEFA0A1B0GWK0 134 aa13.26□□□□□ -0.29
CHD4-203ENST00000535717 SOX1O00570 391 aaPredicted RBP13.26□□□□□ -0.29
CHD4-203ENST00000535717 KLRC4O43908 158 aa13.26□□□□□ -0.29
CHD4-203ENST00000535717 MYL1P05976 194 aa13.26□□□□□ -0.29
CHD4-203ENST00000535717 ATF7P17544 494 aaPredicted RBP13.26□□□□□ -0.29
CHD4-203ENST00000535717 SCP2P22307 547 aa13.26□□□□□ -0.29
CHD4-203ENST00000535717 PBX2P40425 430 aa13.26□□□□□ -0.29
CHD4-203ENST00000535717 CASP5P51878 434 aa13.26□□□□□ -0.29
CHD4-203ENST00000535717 SMAD3P84022 425 aaKnown RBP13.26□□□□□ -0.29
CHD4-203ENST00000535717 GTF2BQ00403 316 aa13.26□□□□□ -0.29
CHD4-203ENST00000535717 STRN3Q13033 797 aa13.26□□□□□ -0.29
CHD4-203ENST00000535717 HABP4Q5JVS0 413 aaKnown RBP13.26□□□□□ -0.29
CHD4-203ENST00000535717 KANK3Q6NY19 840 aa13.26□□□□□ -0.29
CHD4-203ENST00000535717 ZNF598Q86UK7 904 aaKnown RBP13.26□□□□□ -0.29
CHD4-203ENST00000535717 CCDC51Q96ER9 411 aa13.26□□□□□ -0.29
CHD4-203ENST00000535717 TIGD1Q96MW7 591 aa13.26□□□□□ -0.29
CHD4-203ENST00000535717 ACO2Q99798 780 aaKnown RBP13.26□□□□□ -0.29
CHD4-203ENST00000535717 ZBED2Q9BTP6 218 aa13.26□□□□□ -0.29
CHD4-203ENST00000535717 TARS2Q9BW92 718 aaKnown RBP13.26□□□□□ -0.29
CHD4-203ENST00000535717 STRA6Q9BX79 667 aa13.26□□□□□ -0.29
CHD4-203ENST00000535717 EIF2AQ9BY44 585 aaKnown RBP13.26□□□□□ -0.29
CHD4-203ENST00000535717 MRPL4Q9BYD3 311 aaKnown RBP13.26□□□□□ -0.29
CHD4-203ENST00000535717 FGFBP2Q9BYJ0 223 aa13.26□□□□□ -0.29
CHD4-203ENST00000535717 PDZD7Q9H5P4 517 aa13.26□□□□□ -0.29
CHD4-203ENST00000535717 LMBRD1Q9NUN5 540 aa13.26□□□□□ -0.29
CHD4-203ENST00000535717 FAM105AQ9NUU6 356 aa13.26□□□□□ -0.29
CHD4-203ENST00000535717 TBX20Q9UMR3 447 aa13.26□□□□□ -0.29
CHD4-203ENST00000535717 PCDHB2Q9Y5E7 798 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms