RNA–Protein interactions for RNA: ENST00000533946.5

SSBP3-215, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 3

Gene SSBP3, Length 431 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-215ENST00000533946 SFPQP23246 707 aaKnown RBP eCLIP10.71□□□□□ -0.69
SSBP3-215ENST00000533946 RPA1P27694 616 aa10.71□□□□□ -0.69
SSBP3-215ENST00000533946 CCT6AP40227 531 aaKnown RBP10.71□□□□□ -0.69
SSBP3-215ENST00000533946 KCNC3Q14003 757 aa10.71□□□□□ -0.69
SSBP3-215ENST00000533946 PADI6Q6TGC4 694 aa10.71□□□□□ -0.69
SSBP3-215ENST00000533946 OTUD6AQ7L8S5 288 aa10.71□□□□□ -0.69
SSBP3-215ENST00000533946 C12orf76Q8N812 135 aaPredicted RBP10.71□□□□□ -0.69
SSBP3-215ENST00000533946 MICAL1Q8TDZ2 1067 aa10.71□□□□□ -0.69
SSBP3-215ENST00000533946 SYMPKQ92797 1274 aaKnown RBP10.71□□□□□ -0.69
SSBP3-215ENST00000533946 GAD1Q99259 594 aa10.71□□□□□ -0.69
SSBP3-215ENST00000533946 NAP1L4Q99733 375 aaKnown RBP10.71□□□□□ -0.69
SSBP3-215ENST00000533946 PAAF1Q9BRP4 392 aa10.71□□□□□ -0.69
SSBP3-215ENST00000533946 POLR3CQ9BUI4 534 aaPredicted RBP10.71□□□□□ -0.69
SSBP3-215ENST00000533946 INO80BQ9C086 356 aaPredicted RBP10.71□□□□□ -0.69
SSBP3-215ENST00000533946 LMAN2LQ9H0V9 348 aa10.71□□□□□ -0.69
SSBP3-215ENST00000533946 DDX19AQ9NUU7 478 aaKnown RBP10.71□□□□□ -0.69
SSBP3-215ENST00000533946 KIAA1024Q9UPX6 916 aa10.71□□□□□ -0.69
SSBP3-215ENST00000533946 IPPQ9Y573 584 aa10.71□□□□□ -0.69
SSBP3-215ENST00000533946 PCDHB12Q9Y5F1 795 aa10.71□□□□□ -0.69
SSBP3-215ENST00000533946 LRRIQ4A6NIV6 560 aa10.7□□□□□ -0.7
SSBP3-215ENST00000533946 MEFVO15553 781 aaPredicted RBP10.7□□□□□ -0.7
SSBP3-215ENST00000533946 ZNF623O75123 536 aa10.7□□□□□ -0.7
SSBP3-215ENST00000533946 NPTXRO95502 500 aa10.7□□□□□ -0.7
SSBP3-215ENST00000533946 EOMESO95936 686 aa10.7□□□□□ -0.7
SSBP3-215ENST00000533946 SSBP05455 408 aaKnown RBP eCLIP10.7□□□□□ -0.7
SSBP3-215ENST00000533946 SP100P23497 879 aaPredicted RBP10.7□□□□□ -0.7
SSBP3-215ENST00000533946 FXR2P51116 673 aaKnown RBP eCLIP10.7□□□□□ -0.78e-6■■■■□ 21.8
SSBP3-215ENST00000533946 RAD51AP2Q09MP3 1159 aa10.7□□□□□ -0.7
SSBP3-215ENST00000533946 MAPK7Q13164 816 aa10.7□□□□□ -0.7
SSBP3-215ENST00000533946 ZRSR1Q15695 479 aaKnown RBP10.7□□□□□ -0.7
SSBP3-215ENST00000533946 DUSP6Q16828 381 aa10.7□□□□□ -0.7
SSBP3-215ENST00000533946 NOMO2Q5JPE7 1267 aa10.7□□□□□ -0.7
SSBP3-215ENST00000533946 NT5DC1Q5TFE4 455 aa10.7□□□□□ -0.7
SSBP3-215ENST00000533946 SYCE2Q6PIF2 218 aa10.7□□□□□ -0.7
SSBP3-215ENST00000533946 USP49Q70CQ1 688 aa10.7□□□□□ -0.7
SSBP3-215ENST00000533946 TAS1R3Q7RTX0 852 aa10.7□□□□□ -0.7
SSBP3-215ENST00000533946 SRGAP1Q7Z6B7 1085 aa10.7□□□□□ -0.7
SSBP3-215ENST00000533946 LRRC43Q8N309 656 aa10.7□□□□□ -0.7
SSBP3-215ENST00000533946 IGSF22Q8N9C0 903 aa10.7□□□□□ -0.7
SSBP3-215ENST00000533946 MRPS27Q92552 414 aaKnown RBP10.7□□□□□ -0.7
SSBP3-215ENST00000533946 ZNF558Q96NG5 402 aa10.7□□□□□ -0.7
SSBP3-215ENST00000533946 TCF25Q9BQ70 676 aa10.7□□□□□ -0.7
SSBP3-215ENST00000533946 TRAIPQ9BWF2 469 aa10.7□□□□□ -0.7
SSBP3-215ENST00000533946 BHMT2Q9H2M3 363 aa10.7□□□□□ -0.7
SSBP3-215ENST00000533946 TLE6Q9H808 572 aa10.7□□□□□ -0.7
SSBP3-215ENST00000533946 TUFT1Q9NNX1 390 aa10.7□□□□□ -0.7
SSBP3-215ENST00000533946 TLR9Q9NR96 1032 aa10.7□□□□□ -0.7
SSBP3-215ENST00000533946 CHST12Q9NRB3 414 aa10.7□□□□□ -0.7
SSBP3-215ENST00000533946 MARCH5Q9NX47 278 aa10.7□□□□□ -0.7
SSBP3-215ENST00000533946 LRWD1Q9UFC0 647 aa10.7□□□□□ -0.7
SSBP3-215ENST00000533946 DOCK6Q96HP0 2047 aa10.7□□□□□ -0.7
SSBP3-215ENST00000533946 TDRD15B5MCY1 1934 aaKnown RBP10.7□□□□□ -0.7
SSBP3-215ENST00000533946 PLXNA3P51805 1871 aa10.7□□□□□ -0.7
SSBP3-215ENST00000533946 C2orf71A6NGG8 1288 aa10.69□□□□□ -0.7
SSBP3-215ENST00000533946 ARL5CA6NH57 179 aa10.69□□□□□ -0.7
SSBP3-215ENST00000533946 DGAT1O75907 488 aa10.69□□□□□ -0.7
SSBP3-215ENST00000533946 LAG3P18627 525 aa10.69□□□□□ -0.7
SSBP3-215ENST00000533946 CYP11B2P19099 503 aa10.69□□□□□ -0.7
SSBP3-215ENST00000533946 MLH1P40692 756 aa10.69□□□□□ -0.7
SSBP3-215ENST00000533946 SCNN1GP51170 649 aa10.69□□□□□ -0.7
SSBP3-215ENST00000533946 PLCB3Q01970 1234 aa10.69□□□□□ -0.7
SSBP3-215ENST00000533946 CACNB1Q02641 598 aaPredicted RBP10.69□□□□□ -0.7
SSBP3-215ENST00000533946 ZP2Q05996 745 aa10.69□□□□□ -0.7
SSBP3-215ENST00000533946 CUL4AQ13619 759 aa10.69□□□□□ -0.7
SSBP3-215ENST00000533946 GNL2Q13823 731 aaKnown RBP10.69□□□□□ -0.7
SSBP3-215ENST00000533946 SPECC1Q5M775 1068 aa10.69□□□□□ -0.7
SSBP3-215ENST00000533946 ODR4Q5SWX8 454 aa10.69□□□□□ -0.7
SSBP3-215ENST00000533946 IFNLR1Q8IU57 520 aaPredicted RBP10.69□□□□□ -0.7
SSBP3-215ENST00000533946 ABI1Q8IZP0 508 aa10.69□□□□□ -0.7
SSBP3-215ENST00000533946 EFHBQ8N7U6 833 aa10.69□□□□□ -0.7
SSBP3-215ENST00000533946 SNX29Q8TEQ0 813 aa10.69□□□□□ -0.7
SSBP3-215ENST00000533946 CCDC113Q9H0I3 377 aa10.69□□□□□ -0.7
SSBP3-215ENST00000533946 S1PR5Q9H228 398 aa10.69□□□□□ -0.7
SSBP3-215ENST00000533946 SPG21Q9NZD8 308 aa10.69□□□□□ -0.7
SSBP3-215ENST00000533946 DBR1Q9UK59 544 aaKnown RBP10.69□□□□□ -0.7
SSBP3-215ENST00000533946 PRG3Q9Y2Y8 225 aaPredicted RBP10.69□□□□□ -0.7
SSBP3-215ENST00000533946 RWDD3Q9Y3V2 267 aa10.69□□□□□ -0.7
SSBP3-215ENST00000533946 VWA3AA6NCI4 1184 aa10.68□□□□□ -0.7
SSBP3-215ENST00000533946 NRP1O14786 923 aa10.68□□□□□ -0.7
SSBP3-215ENST00000533946 ST18O60284 1047 aa10.68□□□□□ -0.7
SSBP3-215ENST00000533946 DKC1O60832 514 aaKnown RBP eCLIP10.68□□□□□ -0.7
SSBP3-215ENST00000533946 CLASP2O75122 1294 aaKnown RBP10.68□□□□□ -0.7
SSBP3-215ENST00000533946 CXCL14O95715 111 aa10.68□□□□□ -0.7
SSBP3-215ENST00000533946 EPCAMP16422 314 aa10.68□□□□□ -0.7
SSBP3-215ENST00000533946 NCLP19338 710 aaKnown RBP10.68□□□□□ -0.7
SSBP3-215ENST00000533946 NDUFV1P49821 464 aa10.68□□□□□ -0.7
SSBP3-215ENST00000533946 ATP2C1P98194 919 aaPredicted RBP10.68□□□□□ -0.7
SSBP3-215ENST00000533946 AAK1Q2M2I8 961 aa10.68□□□□□ -0.7
SSBP3-215ENST00000533946 NAALADL2Q58DX5 795 aa10.68□□□□□ -0.7
SSBP3-215ENST00000533946 CDCA2Q69YH5 1023 aaPredicted RBP10.68□□□□□ -0.7
SSBP3-215ENST00000533946 VPS52Q8N1B4 723 aa10.68□□□□□ -0.7
SSBP3-215ENST00000533946 CEP120Q8N960 986 aa10.68□□□□□ -0.7
SSBP3-215ENST00000533946 IL27Q8NEV9 243 aa10.68□□□□□ -0.7
SSBP3-215ENST00000533946 TCP11Q8WWU5 503 aa10.68□□□□□ -0.7
SSBP3-215ENST00000533946 IGSF21Q96ID5 467 aa10.68□□□□□ -0.7
SSBP3-215ENST00000533946 ZBTB45Q96K62 511 aaPredicted RBP10.68□□□□□ -0.7
SSBP3-215ENST00000533946 NACC1Q96RE7 527 aa10.68□□□□□ -0.7
SSBP3-215ENST00000533946 ZBP1Q9H171 429 aa10.68□□□□□ -0.7
SSBP3-215ENST00000533946 CSRNP2Q9H175 543 aa10.68□□□□□ -0.7
SSBP3-215ENST00000533946 IKZF4Q9H2S9 585 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms