RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 NECTIN4Q96NY8 510 aa16.42■□□□□ 0.22
VPS28-215ENST00000531924 EIF2AK1Q9BQI3 630 aaKnown RBP16.42■□□□□ 0.22
VPS28-215ENST00000531924 S1PR5Q9H228 398 aa16.42■□□□□ 0.22
VPS28-215ENST00000531924 NRDE2Q9H7Z3 1164 aa16.42■□□□□ 0.22
VPS28-215ENST00000531924 TTC12Q9H892 705 aaPredicted RBP16.42■□□□□ 0.22
VPS28-215ENST00000531924 RSAD1Q9HA92 442 aa16.42■□□□□ 0.22
VPS28-215ENST00000531924 UBN1Q9NPG3 1134 aa16.42■□□□□ 0.22
VPS28-215ENST00000531924 CNTNAP2Q9UHC6 1331 aa16.42■□□□□ 0.22
VPS28-215ENST00000531924 MEIS3P2A8K0S8 358 aa16.41■□□□□ 0.22
VPS28-215ENST00000531924 BTBD18B2RXH4 712 aa16.41■□□□□ 0.22
VPS28-215ENST00000531924 INO80B-WBP1J3KQ70 363 aa16.41■□□□□ 0.22
VPS28-215ENST00000531924 SLITRK3O94933 977 aa16.41■□□□□ 0.22
VPS28-215ENST00000531924 ALDH2P05091 517 aa16.41■□□□□ 0.22
VPS28-215ENST00000531924 FDPSP14324 419 aaKnown RBP16.41■□□□□ 0.22
VPS28-215ENST00000531924 SP100P23497 879 aaPredicted RBP16.41■□□□□ 0.22
VPS28-215ENST00000531924 ZXDAP98168 799 aa16.41■□□□□ 0.22
VPS28-215ENST00000531924 PCBP1Q15365 356 aaKnown RBP eCLIP16.41■□□□□ 0.22
VPS28-215ENST00000531924 ERICH6BQ5W0A0 696 aa16.41■□□□□ 0.22
VPS28-215ENST00000531924 SUGP1Q8IWZ8 645 aaKnown RBP16.41■□□□□ 0.22
VPS28-215ENST00000531924 HACE1Q8IYU2 909 aa16.41■□□□□ 0.22
VPS28-215ENST00000531924 AUTS2Q8WXX7 1259 aa16.41■□□□□ 0.22
VPS28-215ENST00000531924 RIPOR3Q96MK2 946 aa16.41■□□□□ 0.22
VPS28-215ENST00000531924 TRIM6Q9C030 488 aaPredicted RBP16.41■□□□□ 0.22
VPS28-215ENST00000531924 KCNH6Q9H252 994 aa16.41■□□□□ 0.22
VPS28-215ENST00000531924 ADAM7Q9H2U9 754 aa16.41■□□□□ 0.22
VPS28-215ENST00000531924 MINDY3Q9H8M7 445 aa16.41■□□□□ 0.22
VPS28-215ENST00000531924 DZANK1Q9NVP4 752 aa16.41■□□□□ 0.22
VPS28-215ENST00000531924 ZBTB39O15060 712 aa16.4■□□□□ 0.22
VPS28-215ENST00000531924 CTSAP10619 480 aa16.4■□□□□ 0.22
VPS28-215ENST00000531924 ITGA4P13612 1032 aa16.4■□□□□ 0.22
VPS28-215ENST00000531924 ATP2B1P20020 1258 aa16.4■□□□□ 0.22
VPS28-215ENST00000531924 AXLP30530 894 aa16.4■□□□□ 0.22
VPS28-215ENST00000531924 MTHFRP42898 656 aa16.4■□□□□ 0.22
VPS28-215ENST00000531924 SLC11A1P49279 550 aa16.4■□□□□ 0.22
VPS28-215ENST00000531924 SPIRE1Q08AE8 756 aa16.4■□□□□ 0.22
VPS28-215ENST00000531924 NOTUMQ6P988 496 aa16.4■□□□□ 0.22
VPS28-215ENST00000531924 AGMOQ6ZNB7 445 aa16.4■□□□□ 0.22
VPS28-215ENST00000531924 MRPL10Q7Z7H8 261 aaKnown RBP16.4■□□□□ 0.22
VPS28-215ENST00000531924 PPFIBP1Q86W92 1011 aa16.4■□□□□ 0.22
VPS28-215ENST00000531924 TMEM173Q86WV6 379 aaPredicted RBP16.4■□□□□ 0.22
VPS28-215ENST00000531924 NSUN7Q8NE18 718 aaKnown RBP16.4■□□□□ 0.22
VPS28-215ENST00000531924 EMILIN2Q9BXX0 1053 aa16.4■□□□□ 0.22
VPS28-215ENST00000531924 ZBP1Q9H171 429 aa16.4■□□□□ 0.22
VPS28-215ENST00000531924 ANKEF1Q9NU02 776 aa16.4■□□□□ 0.22
VPS28-215ENST00000531924 DNAJB4Q9UDY4 337 aa16.4■□□□□ 0.22
VPS28-215ENST00000531924 FAN1Q9Y2M0 1017 aa16.4■□□□□ 0.22
VPS28-215ENST00000531924 WDR81Q562E7 1941 aa16.4■□□□□ 0.22
VPS28-215ENST00000531924 JAK2O60674 1132 aa16.39■□□□□ 0.21
VPS28-215ENST00000531924 NR1I2O75469 434 aa16.39■□□□□ 0.21
VPS28-215ENST00000531924 DGAT1O75907 488 aa16.39■□□□□ 0.21
VPS28-215ENST00000531924 LARGE1O95461 756 aa16.39■□□□□ 0.21
VPS28-215ENST00000531924 POMCP01189 267 aa16.39■□□□□ 0.21
VPS28-215ENST00000531924 SSBP05455 408 aaKnown RBP eCLIP16.39■□□□□ 0.21
VPS28-215ENST00000531924 HOXA11P31270 313 aaPredicted RBP16.39■□□□□ 0.21
VPS28-215ENST00000531924 HOXD11P31277 338 aaPredicted RBP16.39■□□□□ 0.21
VPS28-215ENST00000531924 PTPN21Q16825 1174 aa16.39■□□□□ 0.21
VPS28-215ENST00000531924 ATAT1Q5SQI0 421 aa16.39■□□□□ 0.21
VPS28-215ENST00000531924 RARS2Q5T160 578 aaKnown RBP16.39■□□□□ 0.21
VPS28-215ENST00000531924 CABP7Q86V35 215 aa16.39■□□□□ 0.21
VPS28-215ENST00000531924 ZNF280BQ86YH2 543 aa16.39■□□□□ 0.21
VPS28-215ENST00000531924 TNFRSF25Q93038 417 aa16.39■□□□□ 0.21
VPS28-215ENST00000531924 CCDC51Q96ER9 411 aa16.39■□□□□ 0.21
VPS28-215ENST00000531924 HSD17B14Q9BPX1 270 aa16.39■□□□□ 0.21
VPS28-215ENST00000531924 TMEM175Q9BSA9 504 aa16.39■□□□□ 0.21
VPS28-215ENST00000531924 LYPLA2O95372 231 aa16.38■□□□□ 0.21
VPS28-215ENST00000531924 NCLP19338 710 aaKnown RBP16.38■□□□□ 0.21
VPS28-215ENST00000531924 KLRC2P26717 231 aa16.38■□□□□ 0.21
VPS28-215ENST00000531924 PTENP60484 403 aa16.38■□□□□ 0.21
VPS28-215ENST00000531924 UBXN11Q5T124 520 aa16.38■□□□□ 0.21
VPS28-215ENST00000531924 BMP8AQ7Z5Y6 402 aa16.38■□□□□ 0.21
VPS28-215ENST00000531924 FBXL18Q96ME1 805 aa16.38■□□□□ 0.21
VPS28-215ENST00000531924 APOL6Q9BWW8 343 aa16.38■□□□□ 0.21
VPS28-215ENST00000531924 MRPL17Q9NRX2 175 aaKnown RBP16.38■□□□□ 0.21
VPS28-215ENST00000531924 DBR1Q9UK59 544 aaKnown RBP16.38■□□□□ 0.21
VPS28-215ENST00000531924 IRAK3Q9Y616 596 aa16.38■□□□□ 0.21
VPS28-215ENST00000531924 TSPAN1O60635 241 aa16.37■□□□□ 0.21
VPS28-215ENST00000531924 DDHD2O94830 711 aa16.37■□□□□ 0.21
VPS28-215ENST00000531924 EPCAMP16422 314 aa16.37■□□□□ 0.21
VPS28-215ENST00000531924 MCM7P33993 719 aa16.37■□□□□ 0.21
VPS28-215ENST00000531924 OR1G1P47890 313 aa16.37■□□□□ 0.21
VPS28-215ENST00000531924 GUCY1B3Q02153 619 aa16.37■□□□□ 0.21
VPS28-215ENST00000531924 SIGLEC14Q08ET2 396 aa16.37■□□□□ 0.21
VPS28-215ENST00000531924 GNL2Q13823 731 aaKnown RBP16.37■□□□□ 0.21
VPS28-215ENST00000531924 ELMSAN1Q6PJG2 1045 aa16.37■□□□□ 0.21
VPS28-215ENST00000531924 C12orf76Q8N812 135 aaPredicted RBP16.37■□□□□ 0.21
VPS28-215ENST00000531924 PIGOQ8TEQ8 1089 aa16.37■□□□□ 0.21
VPS28-215ENST00000531924 BCL7CQ8WUZ0 217 aaPredicted RBP16.37■□□□□ 0.21
VPS28-215ENST00000531924 CPB2Q96IY4 423 aa16.37■□□□□ 0.21
VPS28-215ENST00000531924 CSRNP2Q9H175 543 aa16.37■□□□□ 0.21
VPS28-215ENST00000531924 XPNPEP1Q9NQW7 623 aa16.37■□□□□ 0.21
VPS28-215ENST00000531924 SSX2IPQ9Y2D8 614 aa16.37■□□□□ 0.21
VPS28-215ENST00000531924 PRG3Q9Y2Y8 225 aaPredicted RBP16.37■□□□□ 0.21
VPS28-215ENST00000531924 IPPQ9Y573 584 aa16.37■□□□□ 0.21
VPS28-215ENST00000531924 C2CD2LO14523 706 aa16.36■□□□□ 0.21
VPS28-215ENST00000531924 NRP1O14786 923 aa16.36■□□□□ 0.21
VPS28-215ENST00000531924 USO1O60763 962 aaKnown RBP16.36■□□□□ 0.21
VPS28-215ENST00000531924 URODP06132 367 aa16.36■□□□□ 0.21
VPS28-215ENST00000531924 WEE2P0C1S8 567 aa16.36■□□□□ 0.21
VPS28-215ENST00000531924 XRCC6P12956 609 aaKnown RBP eCLIP16.36■□□□□ 0.217e-6■□□□□ 8.8
VPS28-215ENST00000531924 POU5F1BQ06416 359 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms