RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 ATP2C1P98194 919 aaPredicted RBP5.12□□□□□ -1.59
CD44-233ENST00000531141 CDK17Q00537 523 aa5.12□□□□□ -1.59
CD44-233ENST00000531141 CD69Q07108 199 aa5.12□□□□□ -1.59
CD44-233ENST00000531141 MALLQ13021 153 aa5.12□□□□□ -1.59
CD44-233ENST00000531141 RIN1Q13671 783 aa5.12□□□□□ -1.59
CD44-233ENST00000531141 PTPN21Q16825 1174 aa5.12□□□□□ -1.59
CD44-233ENST00000531141 GLB1LQ6UWU2 654 aa5.12□□□□□ -1.59
CD44-233ENST00000531141 ZBTB46Q86UZ6 589 aa5.12□□□□□ -1.59
CD44-233ENST00000531141 PNMA8AQ86V59 439 aaPredicted RBP5.12□□□□□ -1.59
CD44-233ENST00000531141 CIR1Q86X95 450 aaPredicted RBP5.12□□□□□ -1.59
CD44-233ENST00000531141 ANKRD53Q8N9V6 530 aa5.12□□□□□ -1.59
CD44-233ENST00000531141 SHCBP1Q8NEM2 672 aa5.12□□□□□ -1.59
CD44-233ENST00000531141 CXorf38Q8TB03 319 aa5.12□□□□□ -1.59
CD44-233ENST00000531141 FATE1Q969F0 183 aa5.12□□□□□ -1.59
CD44-233ENST00000531141 FAXDC2Q96IV6 333 aa5.12□□□□□ -1.59
CD44-233ENST00000531141 DPYSL5Q9BPU6 564 aa5.12□□□□□ -1.59
CD44-233ENST00000531141 BDH2Q9BUT1 245 aa5.12□□□□□ -1.59
CD44-233ENST00000531141 KRTAP17-1Q9BYP8 105 aa5.12□□□□□ -1.59
CD44-233ENST00000531141 C12orf65Q9H3J6 166 aaKnown RBP5.12□□□□□ -1.59
CD44-233ENST00000531141 NELFAQ9H3P2 528 aa5.12□□□□□ -1.59
CD44-233ENST00000531141 ZBTB21Q9ULJ3 1066 aa5.12□□□□□ -1.59
CD44-233ENST00000531141 KLHL33A6NCF5 533 aa5.11□□□□□ -1.59
CD44-233ENST00000531141 NPEPPSL1A6NEC2 478 aa5.11□□□□□ -1.59
CD44-233ENST00000531141 CTSWP56202 376 aa5.11□□□□□ -1.59
CD44-233ENST00000531141 DUSP8Q13202 625 aa5.11□□□□□ -1.59
CD44-233ENST00000531141 MST1LQ2TV78 715 aa5.11□□□□□ -1.59
CD44-233ENST00000531141 PLEKHG6Q3KR16 790 aa5.11□□□□□ -1.59
CD44-233ENST00000531141 MUM1L1Q5H9M0 696 aa5.11□□□□□ -1.59
CD44-233ENST00000531141 TAS1R1Q7RTX1 841 aa5.11□□□□□ -1.59
CD44-233ENST00000531141 ZNF480Q8WV37 535 aa5.11□□□□□ -1.59
CD44-233ENST00000531141 GREM2Q9H772 168 aa5.11□□□□□ -1.59
CD44-233ENST00000531141 IL23AQ9NPF7 189 aa5.11□□□□□ -1.59
CD44-233ENST00000531141 SCOCQ9UIL1 159 aa5.11□□□□□ -1.59
CD44-233ENST00000531141 SLC30A1Q9Y6M5 507 aa5.11□□□□□ -1.59
CD44-233ENST00000531141 TNKSO95271 1327 aa5.11□□□□□ -1.59
CD44-233ENST00000531141 A0A1W2PRX2 142 aa5.1□□□□□ -1.59
CD44-233ENST00000531141 PHF2O75151 1096 aa5.1□□□□□ -1.59
CD44-233ENST00000531141 ALDH1L1O75891 902 aa5.1□□□□□ -1.59
CD44-233ENST00000531141 S100BP04271 92 aaPredicted RBP5.1□□□□□ -1.59
CD44-233ENST00000531141 ITGB3P05106 788 aa5.1□□□□□ -1.59
CD44-233ENST00000531141 GYPEP15421 78 aa5.1□□□□□ -1.59
CD44-233ENST00000531141 CTSSP25774 331 aa5.1□□□□□ -1.59
CD44-233ENST00000531141 CCT2P78371 535 aaKnown RBP5.1□□□□□ -1.59
CD44-233ENST00000531141 SAFB2Q14151 953 aaKnown RBP eCLIP5.1□□□□□ -1.59
CD44-233ENST00000531141 ACAP2Q15057 778 aa5.1□□□□□ -1.59
CD44-233ENST00000531141 C19orf54Q5BKX5 351 aa5.1□□□□□ -1.59
CD44-233ENST00000531141 TMEM240Q5SV17 173 aa5.1□□□□□ -1.59
CD44-233ENST00000531141 ODR4Q5SWX8 454 aa5.1□□□□□ -1.59
CD44-233ENST00000531141 FAM180AQ6UWF9 173 aa5.1□□□□□ -1.59
CD44-233ENST00000531141 MSL3Q8N5Y2 521 aaKnown RBP5.1□□□□□ -1.59
CD44-233ENST00000531141 GIMAP8Q8ND71 665 aaPredicted RBP5.1□□□□□ -1.59
CD44-233ENST00000531141 ABCF1Q8NE71 845 aaKnown RBP eCLIP5.1□□□□□ -1.59
CD44-233ENST00000531141 SNX33Q8WV41 574 aa5.1□□□□□ -1.59
CD44-233ENST00000531141 TEKT5Q96M29 485 aa5.1□□□□□ -1.59
CD44-233ENST00000531141 PUS7Q96PZ0 661 aaKnown RBP5.1□□□□□ -1.59
CD44-233ENST00000531141 GPHA2Q96T91 129 aa5.1□□□□□ -1.59
CD44-233ENST00000531141 ADI1Q9BV57 179 aa5.1□□□□□ -1.59
CD44-233ENST00000531141 PLA2G12BQ9BX93 195 aa5.1□□□□□ -1.59
CD44-233ENST00000531141 RCAN3Q9UKA8 241 aa5.1□□□□□ -1.59
CD44-233ENST00000531141 RPTORQ8N122 1335 aa5.09□□□□□ -1.59
CD44-233ENST00000531141 KRTAP9-7A8MTY7 169 aa5.09□□□□□ -1.59
CD44-233ENST00000531141 FAM171A2A8MVW0 826 aa5.09□□□□□ -1.59
CD44-233ENST00000531141 PPM1GO15355 546 aaPredicted RBP5.09□□□□□ -1.59
CD44-233ENST00000531141 GPR42O15529 346 aa5.09□□□□□ -1.59
CD44-233ENST00000531141 PCDHGA12O60330 932 aa5.09□□□□□ -1.59
CD44-233ENST00000531141 RAD17O75943 681 aa5.09□□□□□ -1.59
CD44-233ENST00000531141 MCAMP43121 646 aa5.09□□□□□ -1.59
CD44-233ENST00000531141 RECQLP46063 649 aaPredicted RBP5.09□□□□□ -1.59
CD44-233ENST00000531141 SLC16A1P53985 500 aa5.09□□□□□ -1.59
CD44-233ENST00000531141 EPHB1P54762 984 aa5.09□□□□□ -1.59
CD44-233ENST00000531141 DUSP2Q05923 314 aa5.09□□□□□ -1.59
CD44-233ENST00000531141 MGAT2Q10469 447 aa5.09□□□□□ -1.59
CD44-233ENST00000531141 TTF1Q15361 905 aaPredicted RBP5.09□□□□□ -1.59
CD44-233ENST00000531141 PCBP2Q15366 365 aaKnown RBP eCLIP5.09□□□□□ -1.59
CD44-233ENST00000531141 UBE3CQ15386 1083 aa5.09□□□□□ -1.59
CD44-233ENST00000531141 ADGRE4PQ86SQ3 457 aa5.09□□□□□ -1.59
CD44-233ENST00000531141 TAX1BP1Q86VP1 789 aa5.09□□□□□ -1.59
CD44-233ENST00000531141 GPR135Q8IZ08 494 aa5.09□□□□□ -1.59
CD44-233ENST00000531141 TTC9BQ8N6N2 239 aa5.09□□□□□ -1.59
CD44-233ENST00000531141 JADE3Q92613 823 aa5.09□□□□□ -1.59
CD44-233ENST00000531141 RPL10LQ96L21 214 aaKnown RBP5.09□□□□□ -1.59
CD44-233ENST00000531141 C20orf173Q96LM9 149 aa5.09□□□□□ -1.59
CD44-233ENST00000531141 GNRHR2Q96P88 292 aa5.09□□□□□ -1.59
CD44-233ENST00000531141 OR14A2Q96R54 314 aa5.09□□□□□ -1.59
CD44-233ENST00000531141 RBM15Q96T37 977 aaKnown RBP eCLIP5.09□□□□□ -1.59
CD44-233ENST00000531141 PTPN18Q99952 460 aa5.09□□□□□ -1.59
CD44-233ENST00000531141 SSBP3Q9BWW4 388 aaPredicted RBP5.09□□□□□ -1.59
CD44-233ENST00000531141 TLR9Q9NR96 1032 aa5.09□□□□□ -1.59
CD44-233ENST00000531141 RBM12Q9NTZ6 932 aaKnown RBP5.09□□□□□ -1.59
CD44-233ENST00000531141 ING3Q9NXR8 418 aa5.09□□□□□ -1.59
CD44-233ENST00000531141 SAP30BPQ9UHR5 308 aaKnown RBP5.09□□□□□ -1.59
CD44-233ENST00000531141 PCDHGA9Q9Y5G4 932 aaKnown RBP5.09□□□□□ -1.59
CD44-233ENST00000531141 PCDHGA8Q9Y5G5 932 aa5.09□□□□□ -1.59
CD44-233ENST00000531141 PCDHGA7Q9Y5G6 932 aa5.09□□□□□ -1.59
CD44-233ENST00000531141 PCDHGA6Q9Y5G7 932 aa5.09□□□□□ -1.59
CD44-233ENST00000531141 PCDHGA3Q9Y5H0 932 aa5.09□□□□□ -1.59
CD44-233ENST00000531141 PCDHGA2Q9Y5H1 932 aa5.09□□□□□ -1.59
CD44-233ENST00000531141 E2F8A0AVK6 867 aa5.08□□□□□ -1.6
CD44-233ENST00000531141 K7ESM1 405 aa5.08□□□□□ -1.6
CD44-233ENST00000531141 NDUFS2O75306 463 aa5.08□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms