RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 HAS3O00219 553 aa23.21■■□□□ 1.31
VPS28-212ENST00000530836 EPB41P11171 864 aaKnown RBP23.21■■□□□ 1.31
VPS28-212ENST00000530836 CDK7P50613 346 aa23.21■■□□□ 1.31
VPS28-212ENST00000530836 LRRC26Q2I0M4 334 aa23.21■■□□□ 1.31
VPS28-212ENST00000530836 NBPF20Q3BBV1 942 aa23.21■■□□□ 1.31
VPS28-212ENST00000530836 MIIPQ5JXC2 388 aa23.21■■□□□ 1.31
VPS28-212ENST00000530836 PPFIBP1Q86W92 1011 aa23.21■■□□□ 1.31
VPS28-212ENST00000530836 MAP4K3Q8IVH8 894 aa23.21■■□□□ 1.31
VPS28-212ENST00000530836 HTATIP2Q9BUP3 242 aa23.21■■□□□ 1.31
VPS28-212ENST00000530836 TUT1Q9H6E5 874 aaKnown RBP23.21■■□□□ 1.31
VPS28-212ENST00000530836 ARHGAP28Q9P2N2 729 aa23.21■■□□□ 1.31
VPS28-212ENST00000530836 PHLPP2Q6ZVD8 1323 aa23.2■■□□□ 1.3
VPS28-212ENST00000530836 PSMC2P35998 433 aaKnown RBP23.2■■□□□ 1.3
VPS28-212ENST00000530836 PSEN2P49810 448 aa23.2■■□□□ 1.3
VPS28-212ENST00000530836 MXD4Q14582 209 aaPredicted RBP23.2■■□□□ 1.3
VPS28-212ENST00000530836 MFSD10Q14728 455 aa23.2■■□□□ 1.3
VPS28-212ENST00000530836 TRIM59Q8IWR1 403 aa23.2■■□□□ 1.3
VPS28-212ENST00000530836 BSNDQ8WZ55 320 aa23.2■■□□□ 1.3
VPS28-212ENST00000530836 DMAC2Q9NW81 257 aa23.2■■□□□ 1.3
VPS28-212ENST00000530836 ARMCX3Q9UH62 379 aaPredicted RBP23.2■■□□□ 1.3
VPS28-212ENST00000530836 FRMD4BQ9Y2L6 1034 aa23.2■■□□□ 1.3
VPS28-212ENST00000530836 DENND3A2RUS2 1198 aa23.19■■□□□ 1.3
VPS28-212ENST00000530836 ZBTB42B2RXF5 422 aa23.19■■□□□ 1.3
VPS28-212ENST00000530836 MAGEB2O15479 319 aa23.19■■□□□ 1.3
VPS28-212ENST00000530836 KIAA0753Q2KHM9 967 aa23.19■■□□□ 1.3
VPS28-212ENST00000530836 NFRKBQ6P4R8 1299 aa23.19■■□□□ 1.3
VPS28-212ENST00000530836 RETREG2Q8NC44 543 aa23.19■■□□□ 1.3
VPS28-212ENST00000530836 CCDC112Q8NEF3 446 aa23.19■■□□□ 1.3
VPS28-212ENST00000530836 CACTINQ8WUQ7 758 aaKnown RBP23.19■■□□□ 1.3
VPS28-212ENST00000530836 TMEM143Q96AN5 459 aa23.19■■□□□ 1.3
VPS28-212ENST00000530836 ERGIC2Q96RQ1 377 aa23.19■■□□□ 1.3
VPS28-212ENST00000530836 NUP58Q9BVL2 599 aa23.19■■□□□ 1.3
VPS28-212ENST00000530836 UTP18Q9Y5J1 556 aaKnown RBP eCLIP23.19■■□□□ 1.3
VPS28-212ENST00000530836 KSR1Q8IVT5 923 aa23.19■■□□□ 1.3
VPS28-212ENST00000530836 CLIC2O15247 247 aa23.18■■□□□ 1.3
VPS28-212ENST00000530836 GLRA2P23416 452 aa23.18■■□□□ 1.3
VPS28-212ENST00000530836 CHMP4BP1P59074 171 aa23.18■■□□□ 1.3
VPS28-212ENST00000530836 ANKRD33Q7Z3H0 272 aa23.18■■□□□ 1.3
VPS28-212ENST00000530836 DEPTORQ8TB45 409 aa23.18■■□□□ 1.3
VPS28-212ENST00000530836 PSPC1Q8WXF1 523 aaKnown RBP23.18■■□□□ 1.3
VPS28-212ENST00000530836 ZNF830Q96NB3 372 aaPredicted RBP23.18■■□□□ 1.3
VPS28-212ENST00000530836 KCNF1Q9H3M0 494 aa23.18■■□□□ 1.3
VPS28-212ENST00000530836 RNPEPQ9H4A4 650 aa23.18■■□□□ 1.3
VPS28-212ENST00000530836 MAPK13O15264 365 aa23.17■■□□□ 1.3
VPS28-212ENST00000530836 ASAP2O43150 1006 aa23.17■■□□□ 1.3
VPS28-212ENST00000530836 AKAP3O75969 853 aa23.17■■□□□ 1.3
VPS28-212ENST00000530836 HSP90AA2PQ14568 343 aaPredicted RBP23.17■■□□□ 1.3
VPS28-212ENST00000530836 TRIM60Q495X7 471 aa23.17■■□□□ 1.3
VPS28-212ENST00000530836 CEP135Q66GS9 1140 aa23.17■■□□□ 1.3
VPS28-212ENST00000530836 ARMCX5Q6P1M9 558 aa23.17■■□□□ 1.3
VPS28-212ENST00000530836 CNGA4Q8IV77 575 aa23.17■■□□□ 1.3
VPS28-212ENST00000530836 TOX2Q96NM4 488 aa23.17■■□□□ 1.3
VPS28-212ENST00000530836 TMEM134Q9H6X4 195 aa23.17■■□□□ 1.3
VPS28-212ENST00000530836 AKR1B15C9JRZ8 316 aaPredicted RBP23.16■■□□□ 1.3
VPS28-212ENST00000530836 EFNA5P52803 228 aa23.16■■□□□ 1.3
VPS28-212ENST00000530836 PTPN11Q06124 597 aaPredicted RBP23.16■■□□□ 1.3
VPS28-212ENST00000530836 STRN3Q13033 797 aa23.16■■□□□ 1.3
VPS28-212ENST00000530836 SESTD1Q86VW0 696 aa23.16■■□□□ 1.3
VPS28-212ENST00000530836 ASAP3Q8TDY4 903 aa23.16■■□□□ 1.3
VPS28-212ENST00000530836 CCDC51Q96ER9 411 aa23.16■■□□□ 1.3
VPS28-212ENST00000530836 MROH7Q68CQ1 1323 aa23.16■■□□□ 1.3
VPS28-212ENST00000530836 INSRRP14616 1297 aa23.15■■□□□ 1.3
VPS28-212ENST00000530836 TLE2Q04725 743 aa23.15■■□□□ 1.3
VPS28-212ENST00000530836 FIGNQ5HY92 759 aa23.15■■□□□ 1.3
VPS28-212ENST00000530836 FAM186BQ8IYM0 893 aa23.15■■□□□ 1.3
VPS28-212ENST00000530836 C7orf31Q8N865 590 aa23.15■■□□□ 1.3
VPS28-212ENST00000530836 PPP1R13LQ8WUF5 828 aa23.15■■□□□ 1.3
VPS28-212ENST00000530836 PRPF31Q8WWY3 499 aaKnown RBP23.15■■□□□ 1.3
VPS28-212ENST00000530836 DPF3Q92784 378 aa23.15■■□□□ 1.3
VPS28-212ENST00000530836 EIF2AK3Q9NZJ5 1116 aaKnown RBP23.15■■□□□ 1.3
VPS28-212ENST00000530836 HDAC6Q9UBN7 1215 aa23.15■■□□□ 1.3
VPS28-212ENST00000530836 ATP11BQ9Y2G3 1177 aa23.15■■□□□ 1.3
VPS28-212ENST00000530836 LRRIQ4A6NIV6 560 aa23.15■■□□□ 1.3
VPS28-212ENST00000530836 EXOC3O60645 756 aa23.15■■□□□ 1.3
VPS28-212ENST00000530836 PQBP1O60828 265 aaKnown RBP23.15■■□□□ 1.3
VPS28-212ENST00000530836 TFDP1Q14186 410 aa23.15■■□□□ 1.3
VPS28-212ENST00000530836 XXYLT1Q8NBI6 393 aa23.15■■□□□ 1.3
VPS28-212ENST00000530836 PANX2Q96RD6 677 aa23.15■■□□□ 1.3
VPS28-212ENST00000530836 KIFC3Q9BVG8 833 aa23.15■■□□□ 1.3
VPS28-212ENST00000530836 C2orf40Q9H1Z8 148 aa23.15■■□□□ 1.3
VPS28-212ENST00000530836 SUGCTQ9HAC7 445 aa23.15■■□□□ 1.3
VPS28-212ENST00000530836 SCN10AQ9Y5Y9 1956 aa23.14■■□□□ 1.3
VPS28-212ENST00000530836 ADGRA3Q8IWK6 1321 aa23.14■■□□□ 1.3
VPS28-212ENST00000530836 RRN3P2A6NIE6 340 aa23.14■■□□□ 1.29
VPS28-212ENST00000530836 K7ERI5 159 aa23.14■■□□□ 1.29
VPS28-212ENST00000530836 KIAA0391O15091 583 aaKnown RBP23.14■■□□□ 1.29
VPS28-212ENST00000530836 TMOD1P28289 359 aa23.14■■□□□ 1.29
VPS28-212ENST00000530836 CYP2J2P51589 502 aa23.14■■□□□ 1.29
VPS28-212ENST00000530836 SYCP1Q15431 976 aa23.14■■□□□ 1.29
VPS28-212ENST00000530836 FAM47CQ5HY64 1035 aa23.14■■□□□ 1.29
VPS28-212ENST00000530836 FAM126BQ8IXS8 530 aa23.14■■□□□ 1.29
VPS28-212ENST00000530836 BORCS6Q96GS4 357 aa23.14■■□□□ 1.29
VPS28-212ENST00000530836 DCDC2CA8MYV0 355 aa23.13■■□□□ 1.29
VPS28-212ENST00000530836 C22orf31O95567 290 aa23.13■■□□□ 1.29
VPS28-212ENST00000530836 PIGRP01833 764 aa23.13■■□□□ 1.29
VPS28-212ENST00000530836 GYPCP04921 128 aa23.13■■□□□ 1.29
VPS28-212ENST00000530836 SMIM10L2AP0DMW4 78 aa23.13■■□□□ 1.29
VPS28-212ENST00000530836 SMIM10L2BP0DMW5 78 aa23.13■■□□□ 1.29
VPS28-212ENST00000530836 SKILP12757 684 aa23.13■■□□□ 1.29
VPS28-212ENST00000530836 GARTP22102 1010 aa23.13■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms