RNA–Protein interactions for RNA: ENST00000528922.1

CD44-230, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 1,319 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-230ENST00000528922 TNKSO95271 1327 aa6.4□□□□□ -1.39
CD44-230ENST00000528922 TRIM75PA6NK02 468 aa6.39□□□□□ -1.39
CD44-230ENST00000528922 FZD9O00144 591 aa6.39□□□□□ -1.39
CD44-230ENST00000528922 PDGFRBP09619 1106 aa6.39□□□□□ -1.39
CD44-230ENST00000528922 MYBL2P10244 700 aa6.39□□□□□ -1.39
CD44-230ENST00000528922 HOXA5P20719 270 aa6.39□□□□□ -1.39
CD44-230ENST00000528922 SESN2P58004 480 aaPredicted RBP6.39□□□□□ -1.39
CD44-230ENST00000528922 PPP2CBP62714 309 aa6.39□□□□□ -1.39
CD44-230ENST00000528922 PPP2CAP67775 309 aa6.39□□□□□ -1.39
CD44-230ENST00000528922 MRPS9P82933 396 aaKnown RBP6.39□□□□□ -1.39
CD44-230ENST00000528922 EXOSC10Q01780 885 aaKnown RBP6.39□□□□□ -1.39
CD44-230ENST00000528922 HGFACQ04756 655 aa6.39□□□□□ -1.39
CD44-230ENST00000528922 CD69Q07108 199 aa6.39□□□□□ -1.39
CD44-230ENST00000528922 ACAP1Q15027 740 aa6.39□□□□□ -1.39
CD44-230ENST00000528922 ZMAT1Q5H9K5 638 aa6.39□□□□□ -1.39
CD44-230ENST00000528922 PGM2L1Q6PCE3 622 aa6.39□□□□□ -1.39
CD44-230ENST00000528922 TSPEARQ8WU66 669 aa6.39□□□□□ -1.39
CD44-230ENST00000528922 GFM2Q969S9 779 aaKnown RBP6.39□□□□□ -1.39
CD44-230ENST00000528922 FAXDC2Q96IV6 333 aa6.39□□□□□ -1.39
CD44-230ENST00000528922 SMAD5Q99717 465 aaKnown RBP6.39□□□□□ -1.39
CD44-230ENST00000528922 DNAJC28Q9NX36 388 aa6.39□□□□□ -1.39
CD44-230ENST00000528922 TDRD9Q8NDG6 1382 aaKnown RBP6.39□□□□□ -1.39
CD44-230ENST00000528922 TCOF1Q13428 1488 aaKnown RBP6.39□□□□□ -1.39
CD44-230ENST00000528922 A0A0G2JLL6 359 aaPredicted RBP6.38□□□□□ -1.39
CD44-230ENST00000528922 MATN2O00339 956 aa6.38□□□□□ -1.39
CD44-230ENST00000528922 ARHGAP6O43182 974 aa6.38□□□□□ -1.39
CD44-230ENST00000528922 PCDHGA12O60330 932 aa6.38□□□□□ -1.39
CD44-230ENST00000528922 GAAP10253 952 aa6.38□□□□□ -1.39
CD44-230ENST00000528922 MTNR1BP49286 362 aa6.38□□□□□ -1.39
CD44-230ENST00000528922 CDK17Q00537 523 aa6.38□□□□□ -1.39
CD44-230ENST00000528922 NFYCQ13952 458 aa6.38□□□□□ -1.39
CD44-230ENST00000528922 PCBP2Q15366 365 aaKnown RBP eCLIP6.38□□□□□ -1.39
CD44-230ENST00000528922 NCOA2Q15596 1464 aa6.38□□□□□ -1.39
CD44-230ENST00000528922 MUM1Q2TAK8 710 aa6.38□□□□□ -1.39
CD44-230ENST00000528922 FHOD3Q2V2M9 1422 aa6.38□□□□□ -1.39
CD44-230ENST00000528922 CCDC178Q5BJE1 867 aa6.38□□□□□ -1.39
CD44-230ENST00000528922 ZFYVE27Q5T4F4 411 aa6.38□□□□□ -1.39
CD44-230ENST00000528922 ANKRD13AQ8IZ07 590 aa6.38□□□□□ -1.39
CD44-230ENST00000528922 PIK3C3Q8NEB9 887 aa6.38□□□□□ -1.39
CD44-230ENST00000528922 OR14K1Q8NGZ2 314 aa6.38□□□□□ -1.39
CD44-230ENST00000528922 CFHR4Q92496 578 aa6.38□□□□□ -1.39
CD44-230ENST00000528922 FUBP3Q96I24 572 aaKnown RBP eCLIP6.38□□□□□ -1.39
CD44-230ENST00000528922 C20orf173Q96LM9 149 aa6.38□□□□□ -1.39
CD44-230ENST00000528922 PCDHGA9Q9Y5G4 932 aaKnown RBP6.38□□□□□ -1.39
CD44-230ENST00000528922 PCDHGA8Q9Y5G5 932 aa6.38□□□□□ -1.39
CD44-230ENST00000528922 PCDHGA7Q9Y5G6 932 aa6.38□□□□□ -1.39
CD44-230ENST00000528922 PCDHGA6Q9Y5G7 932 aa6.38□□□□□ -1.39
CD44-230ENST00000528922 PCDHGA3Q9Y5H0 932 aa6.38□□□□□ -1.39
CD44-230ENST00000528922 PCDHGA2Q9Y5H1 932 aa6.38□□□□□ -1.39
CD44-230ENST00000528922 GRIN2BQ13224 1484 aa6.37□□□□□ -1.39
CD44-230ENST00000528922 FSBPO95073 299 aa6.37□□□□□ -1.39
CD44-230ENST00000528922 LY86O95711 162 aa6.37□□□□□ -1.39
CD44-230ENST00000528922 RBP3P10745 1247 aa6.37□□□□□ -1.39
CD44-230ENST00000528922 OSMP13725 252 aa6.37□□□□□ -1.39
CD44-230ENST00000528922 EPHB4P54760 987 aa6.37□□□□□ -1.39
CD44-230ENST00000528922 ATP2C1P98194 919 aaPredicted RBP6.37□□□□□ -1.39
CD44-230ENST00000528922 MGAT5Q09328 741 aa6.37□□□□□ -1.39
CD44-230ENST00000528922 DDX10Q13206 875 aaKnown RBP6.37□□□□□ -1.39
CD44-230ENST00000528922 SPIDRQ14159 915 aa6.37□□□□□ -1.39
CD44-230ENST00000528922 MAN2A1Q16706 1144 aa6.37□□□□□ -1.39
CD44-230ENST00000528922 TBC1D10BQ4KMP7 808 aaPredicted RBP6.37□□□□□ -1.39
CD44-230ENST00000528922 ARHGEF18Q6ZSZ5 1173 aa6.37□□□□□ -1.39
CD44-230ENST00000528922 TTLL10Q6ZVT0 673 aa6.37□□□□□ -1.39
CD44-230ENST00000528922 PLEKHH3Q7Z736 793 aa6.37□□□□□ -1.39
CD44-230ENST00000528922 PLA2G15Q8NCC3 412 aa6.37□□□□□ -1.39
CD44-230ENST00000528922 AUTS2Q8WXX7 1259 aa6.37□□□□□ -1.39
CD44-230ENST00000528922 SLC2A13Q96QE2 648 aa6.37□□□□□ -1.39
CD44-230ENST00000528922 MKS1Q9NXB0 559 aa6.37□□□□□ -1.39
CD44-230ENST00000528922 NR2E1Q9Y466 385 aa6.37□□□□□ -1.39
CD44-230ENST00000528922 RBM8AQ9Y5S9 174 aaKnown RBP6.37□□□□□ -1.39
CD44-230ENST00000528922 UGGT2Q9NYU1 1516 aa6.36□□□□□ -1.39
CD44-230ENST00000528922 ROCK1Q13464 1354 aa6.36□□□□□ -1.39
CD44-230ENST00000528922 ARID4BQ4LE39 1312 aaPredicted RBP6.36□□□□□ -1.39
CD44-230ENST00000528922 A0A1W2PR48 441 aa6.36□□□□□ -1.39
CD44-230ENST00000528922 SHTN1A0MZ66 631 aa6.36□□□□□ -1.39
CD44-230ENST00000528922 DAPK3O43293 454 aa6.36□□□□□ -1.39
CD44-230ENST00000528922 LAMTOR5O43504 91 aa6.36□□□□□ -1.39
CD44-230ENST00000528922 NRP2O60462 931 aa6.36□□□□□ -1.39
CD44-230ENST00000528922 AGXTP21549 392 aa6.36□□□□□ -1.39
CD44-230ENST00000528922 XPAP23025 273 aaPredicted RBP6.36□□□□□ -1.39
CD44-230ENST00000528922 ADCY7P51828 1080 aa6.36□□□□□ -1.39
CD44-230ENST00000528922 CCT2P78371 535 aaKnown RBP6.36□□□□□ -1.39
CD44-230ENST00000528922 CLUL1Q15846 466 aa6.36□□□□□ -1.39
CD44-230ENST00000528922 PTPN21Q16825 1174 aa6.36□□□□□ -1.39
CD44-230ENST00000528922 FBLN7Q53RD9 439 aa6.36□□□□□ -1.39
CD44-230ENST00000528922 UBXN11Q5T124 520 aa6.36□□□□□ -1.39
CD44-230ENST00000528922 GCDHQ92947 438 aaPredicted RBP6.36□□□□□ -1.39
CD44-230ENST00000528922 NEIL1Q96FI4 390 aaPredicted RBP6.36□□□□□ -1.39
CD44-230ENST00000528922 TEPSINQ96N21 525 aa6.36□□□□□ -1.39
CD44-230ENST00000528922 IFT122Q9HBG6 1241 aa6.36□□□□□ -1.39
CD44-230ENST00000528922 ZNF277Q9NRM2 450 aaPredicted RBP6.36□□□□□ -1.39
CD44-230ENST00000528922 GPR45Q9Y5Y3 372 aa6.36□□□□□ -1.39
CD44-230ENST00000528922 POLR1AO95602 1720 aaPredicted RBP6.36□□□□□ -1.39
CD44-230ENST00000528922 ADCY10Q96PN6 1610 aa6.36□□□□□ -1.39
CD44-230ENST00000528922 NAIPQ13075 1403 aa6.35□□□□□ -1.39
CD44-230ENST00000528922 CFBP00751 764 aa6.35□□□□□ -1.39
CD44-230ENST00000528922 MTHFD2P13995 350 aa6.35□□□□□ -1.39
CD44-230ENST00000528922 ADAM8P78325 824 aa6.35□□□□□ -1.39
CD44-230ENST00000528922 TCIRG1Q13488 830 aa6.35□□□□□ -1.39
CD44-230ENST00000528922 SURF1Q15526 300 aa6.35□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms