RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 TTLL1O95922 423 aa4.73□□□□□ -1.65
CD44-226ENST00000527889 GH2P01242 217 aa4.73□□□□□ -1.65
CD44-226ENST00000527889 CAPNS1P04632 268 aa4.73□□□□□ -1.65
CD44-226ENST00000527889 PARP1P09874 1014 aaKnown RBP4.73□□□□□ -1.65
CD44-226ENST00000527889 NID1P14543 1247 aa4.73□□□□□ -1.65
CD44-226ENST00000527889 VEGFAP15692 232 aaPredicted RBP4.73□□□□□ -1.65
CD44-226ENST00000527889 RAG1P15918 1043 aa4.73□□□□□ -1.65
CD44-226ENST00000527889 EPS15P42566 896 aa4.73□□□□□ -1.65
CD44-226ENST00000527889 ARL4DP49703 201 aa4.73□□□□□ -1.65
CD44-226ENST00000527889 EPHB1P54762 984 aa4.73□□□□□ -1.65
CD44-226ENST00000527889 PPP2R2AP63151 447 aa4.73□□□□□ -1.65
CD44-226ENST00000527889 KRT85P78386 507 aa4.73□□□□□ -1.65
CD44-226ENST00000527889 AKAP17AQ02040 695 aaKnown RBP4.73□□□□□ -1.65
CD44-226ENST00000527889 KIF23Q02241 960 aaPredicted RBP4.73□□□□□ -1.65
CD44-226ENST00000527889 ICA1Q05084 483 aa4.73□□□□□ -1.65
CD44-226ENST00000527889 HSP90AA2PQ14568 343 aaPredicted RBP4.73□□□□□ -1.65
CD44-226ENST00000527889 CCDC96Q2M329 555 aa4.73□□□□□ -1.65
CD44-226ENST00000527889 ABCB5Q2M3G0 1257 aa4.73□□□□□ -1.65
CD44-226ENST00000527889 BBS9Q3SYG4 887 aa4.73□□□□□ -1.65
CD44-226ENST00000527889 SV2CQ496J9 727 aa4.73□□□□□ -1.65
CD44-226ENST00000527889 FKBP1CQ5VVH2 108 aa4.73□□□□□ -1.65
CD44-226ENST00000527889 TATDN1Q6P1N9 297 aa4.73□□□□□ -1.65
CD44-226ENST00000527889 STRA8Q7Z7C7 330 aa4.73□□□□□ -1.65
CD44-226ENST00000527889 LRRTM3Q86VH5 581 aa4.73□□□□□ -1.65
CD44-226ENST00000527889 FOXP4Q8IVH2 680 aaPredicted RBP4.73□□□□□ -1.65
CD44-226ENST00000527889 SCUBE1Q8IWY4 988 aa4.73□□□□□ -1.65
CD44-226ENST00000527889 CCAR1Q8IX12 1150 aaKnown RBP4.73□□□□□ -1.65
CD44-226ENST00000527889 TMEM192Q8IY95 271 aa4.73□□□□□ -1.65
CD44-226ENST00000527889 SLFN12Q8IYM2 578 aa4.73□□□□□ -1.65
CD44-226ENST00000527889 FBXO18Q8NFZ0 1043 aa4.73□□□□□ -1.65
CD44-226ENST00000527889 GPT2Q8TD30 523 aa4.73□□□□□ -1.65
CD44-226ENST00000527889 WASF1Q92558 559 aa4.73□□□□□ -1.65
CD44-226ENST00000527889 DPF2Q92785 391 aa4.73□□□□□ -1.65
CD44-226ENST00000527889 RELTQ969Z4 430 aa4.73□□□□□ -1.65
CD44-226ENST00000527889 DHRS1Q96LJ7 313 aa4.73□□□□□ -1.65
CD44-226ENST00000527889 RNF26Q9BY78 433 aaPredicted RBP4.73□□□□□ -1.65
CD44-226ENST00000527889 WNT10AQ9GZT5 417 aa4.73□□□□□ -1.65
CD44-226ENST00000527889 INTS7Q9NVH2 962 aaKnown RBP4.73□□□□□ -1.65
CD44-226ENST00000527889 GPRC5DQ9NZD1 345 aa4.73□□□□□ -1.65
CD44-226ENST00000527889 HACL1Q9UJ83 578 aa4.73□□□□□ -1.65
CD44-226ENST00000527889 ATP6V1DQ9Y5K8 247 aa4.73□□□□□ -1.65
CD44-226ENST00000527889 CSADQ9Y600 493 aa4.73□□□□□ -1.65
CD44-226ENST00000527889 DDX49Q9Y6V7 483 aaKnown RBP4.73□□□□□ -1.65
CD44-226ENST00000527889 SSC5DA1L4H1 1573 aa4.73□□□□□ -1.65
CD44-226ENST00000527889 ANKRD34BA5PLL1 514 aa4.72□□□□□ -1.65
CD44-226ENST00000527889 BTBD18B2RXH4 712 aa4.72□□□□□ -1.65
CD44-226ENST00000527889 KLRF2D3W0D1 207 aa4.72□□□□□ -1.65
CD44-226ENST00000527889 GNB5O14775 395 aa4.72□□□□□ -1.65
CD44-226ENST00000527889 RGS13O14921 159 aa4.72□□□□□ -1.65
CD44-226ENST00000527889 FSCN2O14926 492 aa4.72□□□□□ -1.65
CD44-226ENST00000527889 ADAMTS3O15072 1205 aa4.72□□□□□ -1.65
CD44-226ENST00000527889 TSPAN6O43657 245 aa4.72□□□□□ -1.65
CD44-226ENST00000527889 CYTH3O43739 400 aa4.72□□□□□ -1.65
CD44-226ENST00000527889 CREB3O43889 395 aa4.72□□□□□ -1.65
CD44-226ENST00000527889 EIF3JO75822 258 aaKnown RBP4.72□□□□□ -1.65
CD44-226ENST00000527889 UBOX5O94941 541 aa4.72□□□□□ -1.65
CD44-226ENST00000527889 MMP1P03956 469 aa4.72□□□□□ -1.65
CD44-226ENST00000527889 ITGAVP06756 1048 aa4.72□□□□□ -1.65
CD44-226ENST00000527889 PDHBP11177 359 aa4.72□□□□□ -1.65
CD44-226ENST00000527889 NAT2P11245 290 aa4.72□□□□□ -1.65
CD44-226ENST00000527889 SCG2P13521 617 aa4.72□□□□□ -1.65
CD44-226ENST00000527889 EEF2P13639 858 aaKnown RBP4.72□□□□□ -1.65
CD44-226ENST00000527889 KIF5BP33176 963 aa4.72□□□□□ -1.65
CD44-226ENST00000527889 NOVP48745 357 aa4.72□□□□□ -1.65
CD44-226ENST00000527889 NT5C2P49902 561 aa4.72□□□□□ -1.65
CD44-226ENST00000527889 GUCY2FP51841 1108 aa4.72□□□□□ -1.65
CD44-226ENST00000527889 ETF1P62495 437 aaKnown RBP4.72□□□□□ -1.65
CD44-226ENST00000527889 MAP2K1Q02750 393 aaPredicted RBP4.72□□□□□ -1.65
CD44-226ENST00000527889 MCL1Q07820 350 aa4.72□□□□□ -1.65
CD44-226ENST00000527889 TRIM29Q14134 588 aa4.72□□□□□ -1.65
CD44-226ENST00000527889 PPP2R5BQ15173 497 aa4.72□□□□□ -1.65
CD44-226ENST00000527889 NBPF12Q5TAG4 269 aaPredicted RBP4.72□□□□□ -1.65
CD44-226ENST00000527889 ANGEL2Q5VTE6 544 aaKnown RBP4.72□□□□□ -1.65
CD44-226ENST00000527889 PRAMEF18Q5VWM3 479 aa4.72□□□□□ -1.65
CD44-226ENST00000527889 TDRD10Q5VZ19 366 aaKnown RBP4.72□□□□□ -1.65
CD44-226ENST00000527889 FAM117BQ6P1L5 589 aa4.72□□□□□ -1.65
CD44-226ENST00000527889 CNNM4Q6P4Q7 775 aa4.72□□□□□ -1.65
CD44-226ENST00000527889 TMEM179Q6ZVK1 233 aa4.72□□□□□ -1.65
CD44-226ENST00000527889 KCTD1Q719H9 257 aa4.72□□□□□ -1.65
CD44-226ENST00000527889 FAM83AQ86UY5 434 aa4.72□□□□□ -1.65
CD44-226ENST00000527889 SIAH1Q8IUQ4 282 aa4.72□□□□□ -1.65
CD44-226ENST00000527889 MCATQ8IVS2 390 aaKnown RBP4.72□□□□□ -1.65
CD44-226ENST00000527889 GPC2Q8N158 579 aa4.72□□□□□ -1.65
CD44-226ENST00000527889 ZNF513Q8N8E2 541 aaPredicted RBP4.72□□□□□ -1.65
CD44-226ENST00000527889 FAM13CQ8NE31 585 aa4.72□□□□□ -1.65
CD44-226ENST00000527889 ATL2Q8NHH9 583 aa4.72□□□□□ -1.65
CD44-226ENST00000527889 RIN3Q8TB24 985 aa4.72□□□□□ -1.65
CD44-226ENST00000527889 LEO1Q8WVC0 666 aaPredicted RBP4.72□□□□□ -1.65
CD44-226ENST00000527889 DDX1Q92499 740 aaKnown RBP4.72□□□□□ -1.65
CD44-226ENST00000527889 PMM1Q92871 262 aa4.72□□□□□ -1.65
CD44-226ENST00000527889 TRIM44Q96DX7 344 aaPredicted RBP4.72□□□□□ -1.65
CD44-226ENST00000527889 CCDC17Q96LX7 622 aa4.72□□□□□ -1.65
CD44-226ENST00000527889 TEPSINQ96N21 525 aa4.72□□□□□ -1.65
CD44-226ENST00000527889 SLC6A18Q96N87 628 aa4.72□□□□□ -1.65
CD44-226ENST00000527889 USP28Q96RU2 1077 aa4.72□□□□□ -1.65
CD44-226ENST00000527889 MAP3K14Q99558 947 aa4.72□□□□□ -1.65
CD44-226ENST00000527889 APBA2Q99767 749 aa4.72□□□□□ -1.65
CD44-226ENST00000527889 AARSD1Q9BTE6 412 aaKnown RBP4.72□□□□□ -1.65
CD44-226ENST00000527889 WDR18Q9BV38 432 aa4.72□□□□□ -1.65
CD44-226ENST00000527889 PLVAPQ9BX97 442 aa4.72□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms