RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 MAPK13O15264 365 aa22.97■■□□□ 1.27
VPS28-208ENST00000527797 ADAMTS4O75173 837 aa22.97■■□□□ 1.27
VPS28-208ENST00000527797 TPM1P09493 284 aa22.97■■□□□ 1.27
VPS28-208ENST00000527797 SFPQP23246 707 aaKnown RBP eCLIP22.97■■□□□ 1.27
VPS28-208ENST00000527797 PTENP60484 403 aa22.97■■□□□ 1.27
VPS28-208ENST00000527797 ARID5BQ14865 1188 aa22.97■■□□□ 1.27
VPS28-208ENST00000527797 SYCP1Q15431 976 aa22.97■■□□□ 1.27
VPS28-208ENST00000527797 MAPK6Q16659 721 aa22.97■■□□□ 1.27
VPS28-208ENST00000527797 SLFN12LQ6IEE8 588 aa22.97■■□□□ 1.27
VPS28-208ENST00000527797 RDH13Q8NBN7 331 aa22.97■■□□□ 1.27
VPS28-208ENST00000527797 NFKBIZQ9BYH8 718 aa22.97■■□□□ 1.27
VPS28-208ENST00000527797 CCDC113Q9H0I3 377 aa22.97■■□□□ 1.27
VPS28-208ENST00000527797 DDX20Q9UHI6 824 aaKnown RBP22.97■■□□□ 1.27
VPS28-208ENST00000527797 TSKSQ9UJT2 592 aa22.97■■□□□ 1.27
VPS28-208ENST00000527797 MBLAC1A4D2B0 266 aaPredicted RBP22.96■■□□□ 1.27
VPS28-208ENST00000527797 AFPP02771 609 aaKnown RBP22.96■■□□□ 1.27
VPS28-208ENST00000527797 KRT13P13646 458 aa22.96■■□□□ 1.27
VPS28-208ENST00000527797 PHKA2P46019 1235 aa22.96■■□□□ 1.27
VPS28-208ENST00000527797 KCNH2Q12809 1159 aa22.96■■□□□ 1.27
VPS28-208ENST00000527797 DCAF17Q5H9S7 520 aaPredicted RBP22.96■■□□□ 1.27
VPS28-208ENST00000527797 TCERG1LQ5VWI1 586 aa22.96■■□□□ 1.27
VPS28-208ENST00000527797 KIAA0319LQ8IZA0 1049 aa22.96■■□□□ 1.27
VPS28-208ENST00000527797 C7orf31Q8N865 590 aa22.96■■□□□ 1.27
VPS28-208ENST00000527797 PCMTD1Q96MG8 357 aaPredicted RBP22.96■■□□□ 1.27
VPS28-208ENST00000527797 TRIM17Q9Y577 477 aa22.96■■□□□ 1.27
VPS28-208ENST00000527797 STYXL1Q9Y6J8 313 aa22.96■■□□□ 1.27
VPS28-208ENST00000527797 KIAA0391O15091 583 aaKnown RBP22.95■■□□□ 1.26
VPS28-208ENST00000527797 PRKCBP05771 671 aa22.95■■□□□ 1.26
VPS28-208ENST00000527797 GNAT1P11488 350 aa22.95■■□□□ 1.26
VPS28-208ENST00000527797 RBL2Q08999 1139 aa22.95■■□□□ 1.26
VPS28-208ENST00000527797 ZPBP2Q6X784 338 aa22.95■■□□□ 1.26
VPS28-208ENST00000527797 INTS8Q75QN2 995 aaKnown RBP22.95■■□□□ 1.26
VPS28-208ENST00000527797 SLC35C1Q96A29 364 aa22.95■■□□□ 1.26
VPS28-208ENST00000527797 ZNF668Q96K58 619 aaPredicted RBP22.95■■□□□ 1.26
VPS28-208ENST00000527797 NUP58Q9BVL2 599 aa22.95■■□□□ 1.26
VPS28-208ENST00000527797 TARS2Q9BW92 718 aaKnown RBP22.95■■□□□ 1.26
VPS28-208ENST00000527797 MRPL4Q9BYD3 311 aaKnown RBP22.95■■□□□ 1.26
VPS28-208ENST00000527797 KCNF1Q9H3M0 494 aa22.95■■□□□ 1.26
VPS28-208ENST00000527797 C17orf102A2RUQ5 167 aa22.94■■□□□ 1.26
VPS28-208ENST00000527797 AKR1B15C9JRZ8 316 aaPredicted RBP22.94■■□□□ 1.26
VPS28-208ENST00000527797 VTNP04004 478 aa22.94■■□□□ 1.26
VPS28-208ENST00000527797 INHAP05111 366 aa22.94■■□□□ 1.26
VPS28-208ENST00000527797 GRK4P32298 578 aa22.94■■□□□ 1.26
VPS28-208ENST00000527797 PPP1R13LQ8WUF5 828 aa22.94■■□□□ 1.26
VPS28-208ENST00000527797 CPLX3Q8WVH0 158 aa22.94■■□□□ 1.26
VPS28-208ENST00000527797 ZKSCAN5Q9Y2L8 839 aa22.94■■□□□ 1.26
VPS28-208ENST00000527797 A0A087WZ62 844 aa22.93■■□□□ 1.26
VPS28-208ENST00000527797 SMIM35A0A1B0GVV1 85 aa22.93■■□□□ 1.26
VPS28-208ENST00000527797 GOLGA8IPA6NC78 632 aa22.93■■□□□ 1.26
VPS28-208ENST00000527797 GOLGA8JA6NMD2 632 aa22.93■■□□□ 1.26
VPS28-208ENST00000527797 INO80B-WBP1J3KQ70 363 aa22.93■■□□□ 1.26
VPS28-208ENST00000527797 MSCO60682 206 aa22.93■■□□□ 1.26
VPS28-208ENST00000527797 CYP2C9P11712 490 aa22.93■■□□□ 1.26
VPS28-208ENST00000527797 CST5P28325 142 aaPredicted RBP22.93■■□□□ 1.26
VPS28-208ENST00000527797 ADAM17P78536 824 aa22.93■■□□□ 1.26
VPS28-208ENST00000527797 CDC42EP1Q00587 391 aa22.93■■□□□ 1.26
VPS28-208ENST00000527797 BFSP1Q12934 665 aa22.93■■□□□ 1.26
VPS28-208ENST00000527797 HSP90AA2PQ14568 343 aaPredicted RBP22.93■■□□□ 1.26
VPS28-208ENST00000527797 CXCL17Q6UXB2 119 aa22.93■■□□□ 1.26
VPS28-208ENST00000527797 ZSCAN30Q86W11 494 aa22.93■■□□□ 1.26
VPS28-208ENST00000527797 IFNLR1Q8IU57 520 aaPredicted RBP22.93■■□□□ 1.26
VPS28-208ENST00000527797 GPD1LQ8N335 351 aa22.93■■□□□ 1.26
VPS28-208ENST00000527797 KLHDC9Q8NEP7 349 aa22.93■■□□□ 1.26
VPS28-208ENST00000527797 SAAL1Q96ER3 474 aa22.93■■□□□ 1.26
VPS28-208ENST00000527797 FDXACB1Q9BRP7 624 aaPredicted RBP22.93■■□□□ 1.26
VPS28-208ENST00000527797 INO80BQ9C086 356 aaPredicted RBP22.93■■□□□ 1.26
VPS28-208ENST00000527797 FZD8Q9H461 694 aa22.93■■□□□ 1.26
VPS28-208ENST00000527797 HDAC6Q9UBN7 1215 aa22.93■■□□□ 1.26
VPS28-208ENST00000527797 USP20Q9Y2K6 914 aa22.93■■□□□ 1.26
VPS28-208ENST00000527797 MYCNP04198 464 aaPredicted RBP22.93■■□□□ 1.26
VPS28-208ENST00000527797 GYPCP04921 128 aa22.93■■□□□ 1.26
VPS28-208ENST00000527797 CASP14P31944 242 aa22.93■■□□□ 1.26
VPS28-208ENST00000527797 MBTD1Q05BQ5 628 aa22.93■■□□□ 1.26
VPS28-208ENST00000527797 LRMPQ12912 555 aa22.93■■□□□ 1.26
VPS28-208ENST00000527797 SNRNP35Q16560 246 aaKnown RBP22.93■■□□□ 1.26
VPS28-208ENST00000527797 ZNF410Q86VK4 478 aa22.93■■□□□ 1.26
VPS28-208ENST00000527797 PCSK9Q8NBP7 692 aaKnown RBP22.93■■□□□ 1.26
VPS28-208ENST00000527797 NLRP7Q8WX94 980 aa22.93■■□□□ 1.26
VPS28-208ENST00000527797 IQCDQ96DY2 449 aa22.93■■□□□ 1.26
VPS28-208ENST00000527797 FBXL18Q96ME1 805 aa22.93■■□□□ 1.26
VPS28-208ENST00000527797 SCLT1Q96NL6 688 aa22.93■■□□□ 1.26
VPS28-208ENST00000527797 PPP1R16BQ96T49 567 aa22.93■■□□□ 1.26
VPS28-208ENST00000527797 IFT122Q9HBG6 1241 aa22.93■■□□□ 1.26
VPS28-208ENST00000527797 KIAA1586Q9HCI6 787 aa22.93■■□□□ 1.26
VPS28-208ENST00000527797 SIK3Q9Y2K2 1263 aa22.93■■□□□ 1.26
VPS28-208ENST00000527797 PTCH2Q9Y6C5 1203 aa22.93■■□□□ 1.26
VPS28-208ENST00000527797 ACKR2O00590 384 aa22.92■■□□□ 1.26
VPS28-208ENST00000527797 NRDCO43847 1150 aa22.92■■□□□ 1.26
VPS28-208ENST00000527797 EDN1P05305 212 aa22.92■■□□□ 1.26
VPS28-208ENST00000527797 MATR3P43243 847 aaKnown RBP eCLIP22.92■■□□□ 1.26
VPS28-208ENST00000527797 GPC3P51654 580 aa22.92■■□□□ 1.26
VPS28-208ENST00000527797 VAMP7P51809 220 aa22.92■■□□□ 1.26
VPS28-208ENST00000527797 ADKP55263 362 aaKnown RBP22.92■■□□□ 1.26
VPS28-208ENST00000527797 HIC1Q14526 733 aa22.92■■□□□ 1.26
VPS28-208ENST00000527797 KCNA10Q16322 511 aa22.92■■□□□ 1.26
VPS28-208ENST00000527797 CNGA4Q8IV77 575 aa22.92■■□□□ 1.26
VPS28-208ENST00000527797 CCDC155Q8N6L0 562 aa22.92■■□□□ 1.26
VPS28-208ENST00000527797 TC2NQ8N9U0 490 aa22.92■■□□□ 1.26
VPS28-208ENST00000527797 ZSWIM2Q8NEG5 633 aa22.92■■□□□ 1.26
VPS28-208ENST00000527797 FAM49AQ9H0Q0 323 aaPredicted RBP22.92■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms