RNA–Protein interactions for RNA: ENST00000524023.1

HDAC9-228, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 2,199 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-228ENST00000524023 C11orf63Q6NUN7 778 aa11.96□□□□□ -0.49
HDAC9-228ENST00000524023 MICALCLQ6ZW33 695 aa11.96□□□□□ -0.49
HDAC9-228ENST00000524023 CNKSR1Q969H4 720 aa11.96□□□□□ -0.49
HDAC9-228ENST00000524023 CBWD1Q9BRT8 395 aa11.96□□□□□ -0.49
HDAC9-228ENST00000524023 PPANQ9NQ55 473 aaKnown RBP11.96□□□□□ -0.49
HDAC9-228ENST00000524023 KCNH7Q9NS40 1196 aa11.96□□□□□ -0.49
HDAC9-228ENST00000524023 ZDHHC18Q9NUE0 388 aa11.96□□□□□ -0.49
HDAC9-228ENST00000524023 PKD2L1Q9P0L9 805 aa11.96□□□□□ -0.49
HDAC9-228ENST00000524023 CTTNBP2NLQ9P2B4 639 aa11.96□□□□□ -0.49
HDAC9-228ENST00000524023 ZNF70Q9UC06 446 aaPredicted RBP11.96□□□□□ -0.49
HDAC9-228ENST00000524023 NOVA2Q9UNW9 492 aaKnown RBP11.96□□□□□ -0.49
HDAC9-228ENST00000524023 ZHX2Q9Y6X8 837 aa11.96□□□□□ -0.49
HDAC9-228ENST00000524023 PFASO15067 1338 aa11.96□□□□□ -0.49
HDAC9-228ENST00000524023 PSME4Q14997 1843 aa11.96□□□□□ -0.49
HDAC9-228ENST00000524023 MIF4GDA9UHW6 222 aaKnown RBP11.96□□□□□ -0.5
HDAC9-228ENST00000524023 DHX15O43143 795 aaKnown RBP11.96□□□□□ -0.5
HDAC9-228ENST00000524023 PPIP5K2O43314 1243 aa11.96□□□□□ -0.5
HDAC9-228ENST00000524023 KIAA0754O94854 1291 aa11.96□□□□□ -0.5
HDAC9-228ENST00000524023 GCLMP48507 274 aa11.96□□□□□ -0.5
HDAC9-228ENST00000524023 GPC5P78333 572 aa11.96□□□□□ -0.5
HDAC9-228ENST00000524023 CNTNAP1P78357 1384 aa11.96□□□□□ -0.5
HDAC9-228ENST00000524023 KRT71Q3SY84 523 aa11.96□□□□□ -0.5
HDAC9-228ENST00000524023 GRIPAP1Q4V328 841 aa11.96□□□□□ -0.5
HDAC9-228ENST00000524023 YTHDF3Q7Z739 585 aaKnown RBP11.96□□□□□ -0.5
HDAC9-228ENST00000524023 RPUSD2Q8IZ73 545 aaKnown RBP11.96□□□□□ -0.5
HDAC9-228ENST00000524023 ZSWIM2Q8NEG5 633 aa11.96□□□□□ -0.5
HDAC9-228ENST00000524023 GLG1Q92896 1179 aa11.96□□□□□ -0.5
HDAC9-228ENST00000524023 AGBL1Q96MI9 1066 aa11.96□□□□□ -0.5
HDAC9-228ENST00000524023 SYNGAP1Q96PV0 1343 aa11.96□□□□□ -0.5
HDAC9-228ENST00000524023 HSPBP1Q9NZL4 362 aa11.96□□□□□ -0.5
HDAC9-228ENST00000524023 CNOT8Q9UFF9 292 aaKnown RBP11.96□□□□□ -0.5
HDAC9-228ENST00000524023 DBR1Q9UK59 544 aaKnown RBP11.96□□□□□ -0.5
HDAC9-228ENST00000524023 ATP8A1Q9Y2Q0 1164 aa11.96□□□□□ -0.5
HDAC9-228ENST00000524023 RPTORQ8N122 1335 aa11.95□□□□□ -0.5
HDAC9-228ENST00000524023 VGLL3A8MV65 326 aa11.95□□□□□ -0.5
HDAC9-228ENST00000524023 PLS3P13797 630 aa11.95□□□□□ -0.5
HDAC9-228ENST00000524023 TMOD1P28289 359 aa11.95□□□□□ -0.5
HDAC9-228ENST00000524023 RARRES1P49788 294 aa11.95□□□□□ -0.5
HDAC9-228ENST00000524023 AADACL2Q6P093 401 aa11.95□□□□□ -0.5
HDAC9-228ENST00000524023 JAMLQ86YT9 394 aa11.95□□□□□ -0.5
HDAC9-228ENST00000524023 OTUD6BQ8N6M0 293 aa11.95□□□□□ -0.5
HDAC9-228ENST00000524023 UBL4BQ8N7F7 174 aa11.95□□□□□ -0.5
HDAC9-228ENST00000524023 XXYLT1Q8NBI6 393 aa11.95□□□□□ -0.5
HDAC9-228ENST00000524023 IL31RAQ8NI17 732 aa11.95□□□□□ -0.5
HDAC9-228ENST00000524023 PLEKHO2Q8TD55 490 aa11.95□□□□□ -0.5
HDAC9-228ENST00000524023 KRT35Q92764 455 aa11.95□□□□□ -0.5
HDAC9-228ENST00000524023 KAT2BQ92831 832 aa11.95□□□□□ -0.5
HDAC9-228ENST00000524023 GLIS2Q9BZE0 524 aaPredicted RBP11.95□□□□□ -0.5
HDAC9-228ENST00000524023 LRRC4CQ9HCJ2 640 aa11.95□□□□□ -0.5
HDAC9-228ENST00000524023 SLTMQ9NWH9 1034 aaKnown RBP eCLIP11.95□□□□□ -0.5
HDAC9-228ENST00000524023 COL20A1Q9P218 1284 aa11.95□□□□□ -0.5
HDAC9-228ENST00000524023 GGA2Q9UJY4 613 aa11.95□□□□□ -0.5
HDAC9-228ENST00000524023 GMNCA6NCL1 334 aa11.95□□□□□ -0.5
HDAC9-228ENST00000524023 DCDC2CA8MYV0 355 aa11.95□□□□□ -0.5
HDAC9-228ENST00000524023 KIAA0391O15091 583 aaKnown RBP11.95□□□□□ -0.5
HDAC9-228ENST00000524023 TRAPPC3O43617 180 aa11.95□□□□□ -0.5
HDAC9-228ENST00000524023 PHF2O75151 1096 aa11.95□□□□□ -0.5
HDAC9-228ENST00000524023 RTN2O75298 545 aa11.95□□□□□ -0.5
HDAC9-228ENST00000524023 PTGER2P43116 358 aa11.95□□□□□ -0.5
HDAC9-228ENST00000524023 DRG2P55039 364 aaKnown RBP11.95□□□□□ -0.5
HDAC9-228ENST00000524023 EIF3BP55884 814 aaKnown RBP11.95□□□□□ -0.5
HDAC9-228ENST00000524023 MAGOHP61326 146 aaKnown RBP11.95□□□□□ -0.5
HDAC9-228ENST00000524023 GTF2BQ00403 316 aa11.95□□□□□ -0.5
HDAC9-228ENST00000524023 TNIP1Q15025 636 aa11.95□□□□□ -0.5
HDAC9-228ENST00000524023 NIPA1Q7RTP0 329 aa11.95□□□□□ -0.5
HDAC9-228ENST00000524023 CDAN1Q8IWY9 1227 aa11.95□□□□□ -0.5
HDAC9-228ENST00000524023 SUPT20HQ8NEM7 779 aa11.95□□□□□ -0.5
HDAC9-228ENST00000524023 KAT5Q92993 513 aa11.95□□□□□ -0.5
HDAC9-228ENST00000524023 MAGOHBQ96A72 148 aaKnown RBP11.95□□□□□ -0.5
HDAC9-228ENST00000524023 PCDHB18PQ96TA0 734 aa11.95□□□□□ -0.5
HDAC9-228ENST00000524023 ZSWIM1Q9BR11 485 aa11.95□□□□□ -0.5
HDAC9-228ENST00000524023 CCPG1Q9ULG6 757 aa11.95□□□□□ -0.5
HDAC9-228ENST00000524023 ZNF536O15090 1300 aa11.94□□□□□ -0.5
HDAC9-228ENST00000524023 MAPK13O15264 365 aa11.94□□□□□ -0.5
HDAC9-228ENST00000524023 PMM2O15305 246 aa11.94□□□□□ -0.5
HDAC9-228ENST00000524023 SGPL1O95470 568 aa11.94□□□□□ -0.5
HDAC9-228ENST00000524023 ICAM1P05362 532 aa11.94□□□□□ -0.5
HDAC9-228ENST00000524023 PAEPP09466 180 aa11.94□□□□□ -0.5
HDAC9-228ENST00000524023 HSPA6P17066 643 aa11.94□□□□□ -0.5
HDAC9-228ENST00000524023 CHRNB2P17787 502 aa11.94□□□□□ -0.5
HDAC9-228ENST00000524023 HSPA1LP34931 641 aa11.94□□□□□ -0.5
HDAC9-228ENST00000524023 CAP2P40123 477 aa11.94□□□□□ -0.5
HDAC9-228ENST00000524023 USP8P40818 1118 aa11.94□□□□□ -0.5
HDAC9-228ENST00000524023 PTGIRP43119 386 aa11.94□□□□□ -0.5
HDAC9-228ENST00000524023 QARSP47897 775 aaKnown RBP11.94□□□□□ -0.5
HDAC9-228ENST00000524023 MARCKSL1P49006 195 aa11.94□□□□□ -0.5
HDAC9-228ENST00000524023 MXI1P50539 228 aa11.94□□□□□ -0.5
HDAC9-228ENST00000524023 PEX5P50542 639 aa11.94□□□□□ -0.5
HDAC9-228ENST00000524023 PPARDQ03181 441 aa11.94□□□□□ -0.5
HDAC9-228ENST00000524023 IFFO1Q0D2I5 559 aa11.94□□□□□ -0.5
HDAC9-228ENST00000524023 DLGAP5Q15398 846 aa11.94□□□□□ -0.5
HDAC9-228ENST00000524023 TKFCQ3LXA3 575 aa11.94□□□□□ -0.5
HDAC9-228ENST00000524023 ZNF746Q6NUN9 644 aaPredicted RBP11.94□□□□□ -0.5
HDAC9-228ENST00000524023 RSBN1LQ6PCB5 846 aaPredicted RBP11.94□□□□□ -0.5
HDAC9-228ENST00000524023 ZDHHC24Q6UX98 284 aa11.94□□□□□ -0.5
HDAC9-228ENST00000524023 MIGA2Q7L4E1 593 aa11.94□□□□□ -0.5
HDAC9-228ENST00000524023 HAUS6Q7Z4H7 955 aa11.94□□□□□ -0.5
HDAC9-228ENST00000524023 C3orf20Q8ND61 904 aa11.94□□□□□ -0.5
HDAC9-228ENST00000524023 EPS8L1Q8TE68 723 aa11.94□□□□□ -0.5
HDAC9-228ENST00000524023 TLCD1Q96CP7 247 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms