RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 C17orf75Q9HAS0 396 aa10.75□□□□□ -0.69
RNF4-221ENST00000513643 PRMT7Q9NVM4 692 aaPredicted RBP10.75□□□□□ -0.69
RNF4-221ENST00000513643 KCND2Q9NZV8 630 aa10.75□□□□□ -0.69
RNF4-221ENST00000513643 ARHGAP28Q9P2N2 729 aa10.75□□□□□ -0.69
RNF4-221ENST00000513643 RALGAPA2Q2PPJ7 1873 aa10.74□□□□□ -0.69
RNF4-221ENST00000513643 EFEMP2O95967 443 aa10.74□□□□□ -0.69
RNF4-221ENST00000513643 PLA2G4BP0C869 781 aa10.74□□□□□ -0.69
RNF4-221ENST00000513643 AFF1P51825 1210 aaKnown RBP10.74□□□□□ -0.69
RNF4-221ENST00000513643 UBE3AQ05086 875 aa10.74□□□□□ -0.69
RNF4-221ENST00000513643 PPP2R5AQ15172 486 aa10.74□□□□□ -0.69
RNF4-221ENST00000513643 CCDC85BQ15834 202 aaPredicted RBP10.74□□□□□ -0.69
RNF4-221ENST00000513643 CSPP1Q1MSJ5 1256 aa10.74□□□□□ -0.69
RNF4-221ENST00000513643 CTC1Q2NKJ3 1217 aa10.74□□□□□ -0.69
RNF4-221ENST00000513643 PAN2Q504Q3 1202 aaKnown RBP10.74□□□□□ -0.69
RNF4-221ENST00000513643 NOTUMQ6P988 496 aa10.74□□□□□ -0.69
RNF4-221ENST00000513643 TAS1R3Q7RTX0 852 aa10.74□□□□□ -0.69
RNF4-221ENST00000513643 LRRC43Q8N309 656 aa10.74□□□□□ -0.69
RNF4-221ENST00000513643 COLGALT1Q8NBJ5 622 aa10.74□□□□□ -0.69
RNF4-221ENST00000513643 CNNM3Q8NE01 707 aa10.74□□□□□ -0.69
RNF4-221ENST00000513643 GSTCDQ8NEC7 633 aa10.74□□□□□ -0.69
RNF4-221ENST00000513643 HELQQ8TDG4 1101 aa10.74□□□□□ -0.69
RNF4-221ENST00000513643 SPIRE2Q8WWL2 714 aa10.74□□□□□ -0.69
RNF4-221ENST00000513643 ATXN2LQ8WWM7 1075 aaKnown RBP10.74□□□□□ -0.69
RNF4-221ENST00000513643 LPPQ93052 612 aa10.74□□□□□ -0.69
RNF4-221ENST00000513643 CCDC43Q96MW1 224 aaKnown RBP10.74□□□□□ -0.69
RNF4-221ENST00000513643 C2orf40Q9H1Z8 148 aa10.74□□□□□ -0.69
RNF4-221ENST00000513643 RNF39Q9H2S5 420 aa10.74□□□□□ -0.69
RNF4-221ENST00000513643 TMEM134Q9H6X4 195 aa10.74□□□□□ -0.69
RNF4-221ENST00000513643 POLD4Q9HCU8 107 aa10.74□□□□□ -0.69
RNF4-221ENST00000513643 PTPRHQ9HD43 1115 aa10.74□□□□□ -0.69
RNF4-221ENST00000513643 LZTS1Q9Y250 596 aa10.74□□□□□ -0.69
RNF4-221ENST00000513643 CNTNAP2Q9UHC6 1331 aa10.74□□□□□ -0.69
RNF4-221ENST00000513643 COL4A4P53420 1690 aaPredicted RBP10.73□□□□□ -0.69
RNF4-221ENST00000513643 LRRIQ4A6NIV6 560 aa10.73□□□□□ -0.69
RNF4-221ENST00000513643 ABLIM1O14639 778 aa10.73□□□□□ -0.69
RNF4-221ENST00000513643 FSCN2O14926 492 aa10.73□□□□□ -0.69
RNF4-221ENST00000513643 B4GALT3O60512 393 aa10.73□□□□□ -0.69
RNF4-221ENST00000513643 HIP1RO75146 1068 aa10.73□□□□□ -0.69
RNF4-221ENST00000513643 ZSCAN22P10073 491 aaPredicted RBP10.73□□□□□ -0.69
RNF4-221ENST00000513643 LAG3P18627 525 aa10.73□□□□□ -0.69
RNF4-221ENST00000513643 MARCKSP29966 332 aaPredicted RBP10.73□□□□□ -0.69
RNF4-221ENST00000513643 DDIT3P35638 169 aa10.73□□□□□ -0.69
RNF4-221ENST00000513643 UBA7P41226 1012 aa10.73□□□□□ -0.69
RNF4-221ENST00000513643 NPTX2P47972 431 aa10.73□□□□□ -0.69
RNF4-221ENST00000513643 ZNF131P52739 623 aa10.73□□□□□ -0.69
RNF4-221ENST00000513643 EFNA5P52803 228 aa10.73□□□□□ -0.69
RNF4-221ENST00000513643 PKP1Q13835 747 aa10.73□□□□□ -0.69
RNF4-221ENST00000513643 PTPROQ16827 1216 aa10.73□□□□□ -0.69
RNF4-221ENST00000513643 NOMO2Q5JPE7 1267 aa10.73□□□□□ -0.69
RNF4-221ENST00000513643 NT5DC1Q5TFE4 455 aa10.73□□□□□ -0.69
RNF4-221ENST00000513643 SLC27A1Q6PCB7 646 aa10.73□□□□□ -0.69
RNF4-221ENST00000513643 KCNT2Q6UVM3 1135 aa10.73□□□□□ -0.69
RNF4-221ENST00000513643 SLC39A11Q8N1S5 342 aa10.73□□□□□ -0.69
RNF4-221ENST00000513643 PGBD4Q96DM1 585 aa10.73□□□□□ -0.69
RNF4-221ENST00000513643 CPB2Q96IY4 423 aa10.73□□□□□ -0.69
RNF4-221ENST00000513643 EPSTI1Q96J88 318 aa10.73□□□□□ -0.69
RNF4-221ENST00000513643 CLIC6Q96NY7 704 aa10.73□□□□□ -0.69
RNF4-221ENST00000513643 FIZ1Q96SL8 496 aa10.73□□□□□ -0.69
RNF4-221ENST00000513643 MRPL9Q9BYD2 267 aaKnown RBP10.73□□□□□ -0.69
RNF4-221ENST00000513643 ALG13Q9NP73 1137 aaKnown RBP10.73□□□□□ -0.69
RNF4-221ENST00000513643 UBN1Q9NPG3 1134 aa10.73□□□□□ -0.69
RNF4-221ENST00000513643 AAASQ9NRG9 546 aa10.73□□□□□ -0.69
RNF4-221ENST00000513643 TBC1D13Q9NVG8 400 aa10.73□□□□□ -0.69
RNF4-221ENST00000513643 COG5Q9UP83 839 aa10.73□□□□□ -0.69
RNF4-221ENST00000513643 ZDHHC9Q9Y397 364 aa10.73□□□□□ -0.69
RNF4-221ENST00000513643 IPPQ9Y573 584 aa10.73□□□□□ -0.69
RNF4-221ENST00000513643 ZMYM2Q9UBW7 1377 aa10.73□□□□□ -0.69
RNF4-221ENST00000513643 PPP6R2O75170 966 aa10.72□□□□□ -0.69
RNF4-221ENST00000513643 FGF18O76093 207 aa10.72□□□□□ -0.69
RNF4-221ENST00000513643 ERLIN2O94905 339 aa10.72□□□□□ -0.69
RNF4-221ENST00000513643 F13A1P00488 732 aa10.72□□□□□ -0.69
RNF4-221ENST00000513643 GALTP07902 379 aa10.72□□□□□ -0.69
RNF4-221ENST00000513643 PLS3P13797 630 aa10.72□□□□□ -0.69
RNF4-221ENST00000513643 PLCG1P19174 1290 aa10.72□□□□□ -0.69
RNF4-221ENST00000513643 PROZP22891 400 aa10.72□□□□□ -0.69
RNF4-221ENST00000513643 IRS1P35568 1242 aa10.72□□□□□ -0.69
RNF4-221ENST00000513643 DSC1Q08554 894 aa10.72□□□□□ -0.69
RNF4-221ENST00000513643 NCBP1Q09161 790 aaKnown RBP10.72□□□□□ -0.69
RNF4-221ENST00000513643 KARSQ15046 597 aaKnown RBP10.72□□□□□ -0.69
RNF4-221ENST00000513643 MAPK6Q16659 721 aa10.72□□□□□ -0.69
RNF4-221ENST00000513643 TIGD5Q53EQ6 642 aa10.72□□□□□ -0.69
RNF4-221ENST00000513643 TCEAL5Q5H9L2 206 aa10.72□□□□□ -0.69
RNF4-221ENST00000513643 GLB1LQ6UWU2 654 aa10.72□□□□□ -0.69
RNF4-221ENST00000513643 ZNF280BQ86YH2 543 aa10.72□□□□□ -0.69
RNF4-221ENST00000513643 ZBTB8OSQ8IWT0 167 aa10.72□□□□□ -0.69
RNF4-221ENST00000513643 TMEM161BQ8NDZ6 487 aa10.72□□□□□ -0.69
RNF4-221ENST00000513643 POF1BQ8WVV4 589 aa10.72□□□□□ -0.69
RNF4-221ENST00000513643 PPM1EQ8WY54 764 aa10.72□□□□□ -0.69
RNF4-221ENST00000513643 RAD54LQ92698 747 aa10.72□□□□□ -0.69
RNF4-221ENST00000513643 SYMPKQ92797 1274 aaKnown RBP10.72□□□□□ -0.69
RNF4-221ENST00000513643 IFT74Q96LB3 600 aa10.72□□□□□ -0.69
RNF4-221ENST00000513643 DRC1Q96MC2 740 aa10.72□□□□□ -0.69
RNF4-221ENST00000513643 ASB2Q96Q27 587 aa10.72□□□□□ -0.69
RNF4-221ENST00000513643 PLIN2Q99541 437 aa10.72□□□□□ -0.69
RNF4-221ENST00000513643 KIFC3Q9BVG8 833 aa10.72□□□□□ -0.69
RNF4-221ENST00000513643 PDZD7Q9H5P4 517 aa10.72□□□□□ -0.69
RNF4-221ENST00000513643 NSUN3Q9H649 340 aaKnown RBP10.72□□□□□ -0.69
RNF4-221ENST00000513643 NRDE2Q9H7Z3 1164 aa10.72□□□□□ -0.69
RNF4-221ENST00000513643 RSAD1Q9HA92 442 aa10.72□□□□□ -0.69
RNF4-221ENST00000513643 MIOSQ9NXC5 875 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms