RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 DENND3A2RUS2 1198 aa8.96□□□□□ -0.98
SCN1A-207ENST00000507401 C9IYK1 514 aa8.96□□□□□ -0.98
SCN1A-207ENST00000507401 SLC37A4O43826 429 aa8.96□□□□□ -0.98
SCN1A-207ENST00000507401 CCNT1O60563 726 aaKnown RBP8.96□□□□□ -0.98
SCN1A-207ENST00000507401 MAFO75444 373 aaPredicted RBP8.96□□□□□ -0.98
SCN1A-207ENST00000507401 P4HBP07237 508 aaKnown RBP8.96□□□□□ -0.98
SCN1A-207ENST00000507401 KRT2P35908 639 aa8.96□□□□□ -0.98
SCN1A-207ENST00000507401 QARSP47897 775 aaKnown RBP8.96□□□□□ -0.98
SCN1A-207ENST00000507401 GPC3P51654 580 aa8.96□□□□□ -0.98
SCN1A-207ENST00000507401 TFF2Q03403 129 aa8.96□□□□□ -0.98
SCN1A-207ENST00000507401 DSC3Q14574 896 aa8.96□□□□□ -0.98
SCN1A-207ENST00000507401 COL19A1Q14993 1142 aa8.96□□□□□ -0.98
SCN1A-207ENST00000507401 EPHA7Q15375 998 aa8.96□□□□□ -0.98
SCN1A-207ENST00000507401 UGCGQ16739 394 aa8.96□□□□□ -0.98
SCN1A-207ENST00000507401 TMEM266Q2M3C6 531 aa8.96□□□□□ -0.98
SCN1A-207ENST00000507401 TIGD5Q53EQ6 642 aa8.96□□□□□ -0.98
SCN1A-207ENST00000507401 PIK3AP1Q6ZUJ8 805 aa8.96□□□□□ -0.98
SCN1A-207ENST00000507401 TRMT1LQ7Z2T5 733 aaKnown RBP8.96□□□□□ -0.98
SCN1A-207ENST00000507401 RETREG3Q86VR2 466 aa8.96□□□□□ -0.98
SCN1A-207ENST00000507401 FAM228AQ86W67 206 aa8.96□□□□□ -0.98
SCN1A-207ENST00000507401 ADAMTS19Q8TE59 1207 aa8.96□□□□□ -0.98
SCN1A-207ENST00000507401 HAS1Q92839 578 aa8.96□□□□□ -0.98
SCN1A-207ENST00000507401 TNFRSF25Q93038 417 aa8.96□□□□□ -0.98
SCN1A-207ENST00000507401 GJA10Q969M2 543 aa8.96□□□□□ -0.98
SCN1A-207ENST00000507401 OSMRQ99650 979 aa8.96□□□□□ -0.98
SCN1A-207ENST00000507401 ADAM2Q99965 735 aa8.96□□□□□ -0.98
SCN1A-207ENST00000507401 LLPHQ9BRT6 129 aaKnown RBP8.96□□□□□ -0.98
SCN1A-207ENST00000507401 INO80BQ9C086 356 aaPredicted RBP8.96□□□□□ -0.98
SCN1A-207ENST00000507401 SLC24A3Q9HC58 644 aa8.96□□□□□ -0.98
SCN1A-207ENST00000507401 CHST12Q9NRB3 414 aa8.96□□□□□ -0.98
SCN1A-207ENST00000507401 GJB4Q9NTQ9 266 aa8.96□□□□□ -0.98
SCN1A-207ENST00000507401 TMEM161AQ9NX61 479 aa8.96□□□□□ -0.98
SCN1A-207ENST00000507401 VAV3Q9UKW4 847 aa8.96□□□□□ -0.98
SCN1A-207ENST00000507401 LIMCH1Q9UPQ0 1083 aa8.96□□□□□ -0.98
SCN1A-207ENST00000507401 AKT3Q9Y243 479 aa8.96□□□□□ -0.98
SCN1A-207ENST00000507401 COL4A4P53420 1690 aaPredicted RBP8.95□□□□□ -0.98
SCN1A-207ENST00000507401 RBAK-RBAKDNI3L0D1 243 aa8.95□□□□□ -0.98
SCN1A-207ENST00000507401 EML1O00423 815 aa8.95□□□□□ -0.98
SCN1A-207ENST00000507401 MARCH6O60337 910 aa8.95□□□□□ -0.98
SCN1A-207ENST00000507401 MGEA5O60502 916 aa8.95□□□□□ -0.98
SCN1A-207ENST00000507401 MMP1P03956 469 aa8.95□□□□□ -0.98
SCN1A-207ENST00000507401 VTNP04004 478 aa8.95□□□□□ -0.98
SCN1A-207ENST00000507401 DARSP14868 501 aaKnown RBP8.95□□□□□ -0.98
SCN1A-207ENST00000507401 JUNDP17535 347 aa8.95□□□□□ -0.98
SCN1A-207ENST00000507401 CTNNB1P35222 781 aa8.95□□□□□ -0.98
SCN1A-207ENST00000507401 MCM2P49736 904 aa8.95□□□□□ -0.98
SCN1A-207ENST00000507401 CLCN3P51790 818 aa8.95□□□□□ -0.98
SCN1A-207ENST00000507401 TRIM29Q14134 588 aa8.95□□□□□ -0.98
SCN1A-207ENST00000507401 LEXMQ3ZCV2 418 aa8.95□□□□□ -0.98
SCN1A-207ENST00000507401 ANO5Q75V66 913 aa8.95□□□□□ -0.98
SCN1A-207ENST00000507401 OTUD6AQ7L8S5 288 aa8.95□□□□□ -0.98
SCN1A-207ENST00000507401 C4orf19Q8IY42 314 aa8.95□□□□□ -0.98
SCN1A-207ENST00000507401 LRRC71Q8N4P6 559 aa8.95□□□□□ -0.98
SCN1A-207ENST00000507401 IPO4Q8TEX9 1081 aaKnown RBP8.95□□□□□ -0.98
SCN1A-207ENST00000507401 RSPH1Q8WYR4 309 aa8.95□□□□□ -0.98
SCN1A-207ENST00000507401 ZSCAN31Q96LW9 406 aaPredicted RBP8.95□□□□□ -0.98
SCN1A-207ENST00000507401 UHRF1Q96T88 793 aaPredicted RBP8.95□□□□□ -0.98
SCN1A-207ENST00000507401 TRAIPQ9BWF2 469 aa8.95□□□□□ -0.98
SCN1A-207ENST00000507401 NSUN3Q9H649 340 aaKnown RBP8.95□□□□□ -0.98
SCN1A-207ENST00000507401 ATP6V0A4Q9HBG4 840 aa8.95□□□□□ -0.98
SCN1A-207ENST00000507401 AAASQ9NRG9 546 aa8.95□□□□□ -0.98
SCN1A-207ENST00000507401 PCDHA12Q9UN75 941 aa8.95□□□□□ -0.98
SCN1A-207ENST00000507401 PLAGL2Q9UPG8 496 aa8.95□□□□□ -0.98
SCN1A-207ENST00000507401 MRPL42Q9Y6G3 142 aaKnown RBP8.95□□□□□ -0.98
SCN1A-207ENST00000507401 A0A0U1RQF3 1178 aa8.94□□□□□ -0.98
SCN1A-207ENST00000507401 BTBD18B2RXH4 712 aa8.94□□□□□ -0.98
SCN1A-207ENST00000507401 GRM6O15303 877 aa8.94□□□□□ -0.98
SCN1A-207ENST00000507401 CD2BP2O95400 341 aaKnown RBP8.94□□□□□ -0.98
SCN1A-207ENST00000507401 LARGE1O95461 756 aa8.94□□□□□ -0.98
SCN1A-207ENST00000507401 EOMESO95936 686 aa8.94□□□□□ -0.98
SCN1A-207ENST00000507401 KCNQ1P51787 676 aa8.94□□□□□ -0.98
SCN1A-207ENST00000507401 UBE3AQ05086 875 aa8.94□□□□□ -0.98
SCN1A-207ENST00000507401 SPIRE1Q08AE8 756 aa8.94□□□□□ -0.98
SCN1A-207ENST00000507401 NR5A1Q13285 461 aa8.94□□□□□ -0.98
SCN1A-207ENST00000507401 SAFBQ15424 915 aaKnown RBP eCLIP8.94□□□□□ -0.98
SCN1A-207ENST00000507401 ZSCAN23Q3MJ62 389 aa8.94□□□□□ -0.98
SCN1A-207ENST00000507401 MTERF2Q49AM1 385 aa8.94□□□□□ -0.98
SCN1A-207ENST00000507401 EARS2Q5JPH6 523 aaKnown RBP8.94□□□□□ -0.98
SCN1A-207ENST00000507401 ZNF410Q86VK4 478 aa8.94□□□□□ -0.98
SCN1A-207ENST00000507401 DIS3L2Q8IYB7 885 aaKnown RBP8.94□□□□□ -0.98
SCN1A-207ENST00000507401 SPPL3Q8TCT6 385 aa8.94□□□□□ -0.98
SCN1A-207ENST00000507401 NEK9Q8TD19 979 aa8.94□□□□□ -0.98
SCN1A-207ENST00000507401 SLC7A3Q8WY07 619 aa8.94□□□□□ -0.98
SCN1A-207ENST00000507401 PABPC5Q96DU9 382 aaKnown RBP8.94□□□□□ -0.98
SCN1A-207ENST00000507401 HSD17B14Q9BPX1 270 aa8.94□□□□□ -0.98
SCN1A-207ENST00000507401 GCOM2Q9BZD3 368 aaPredicted RBP8.94□□□□□ -0.98
SCN1A-207ENST00000507401 ZSWIM4Q9H7M6 989 aa8.94□□□□□ -0.98
SCN1A-207ENST00000507401 UBE2ZQ9H832 354 aaPredicted RBP8.94□□□□□ -0.98
SCN1A-207ENST00000507401 CYP26B1Q9NR63 512 aa8.94□□□□□ -0.98
SCN1A-207ENST00000507401 SPTLC3Q9NUV7 552 aa8.94□□□□□ -0.98
SCN1A-207ENST00000507401 TOR4AQ9NXH8 423 aa8.94□□□□□ -0.98
SCN1A-207ENST00000507401 DACT1Q9NYF0 836 aa8.94□□□□□ -0.98
SCN1A-207ENST00000507401 SUCLA2Q9P2R7 463 aaPredicted RBP8.94□□□□□ -0.98
SCN1A-207ENST00000507401 PCDHB12Q9Y5F1 795 aa8.94□□□□□ -0.98
SCN1A-207ENST00000507401 ASAP2O43150 1006 aa8.93□□□□□ -0.98
SCN1A-207ENST00000507401 GAS2O43903 313 aaKnown RBP8.93□□□□□ -0.98
SCN1A-207ENST00000507401 JAK2O60674 1132 aa8.93□□□□□ -0.98
SCN1A-207ENST00000507401 DGAT1O75907 488 aa8.93□□□□□ -0.98
SCN1A-207ENST00000507401 SLITRK3O94933 977 aa8.93□□□□□ -0.98
SCN1A-207ENST00000507401 LYPLA2O95372 231 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms