RNA–Protein interactions for RNA: ENST00000507293.1

HMGCS1-204, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 1 (best)

Gene HMGCS1, Length 708 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-204ENST00000507293 NHLH1Q02575 133 aa12.88□□□□□ -0.35
HMGCS1-204ENST00000507293 ME3Q16798 604 aa12.88□□□□□ -0.35
HMGCS1-204ENST00000507293 PTPN21Q16825 1174 aa12.88□□□□□ -0.35
HMGCS1-204ENST00000507293 UBXN11Q5T124 520 aa12.88□□□□□ -0.35
HMGCS1-204ENST00000507293 CES5AQ6NT32 575 aa12.88□□□□□ -0.35
HMGCS1-204ENST00000507293 ZNF280BQ86YH2 543 aa12.88□□□□□ -0.35
HMGCS1-204ENST00000507293 TPH2Q8IWU9 490 aa12.88□□□□□ -0.35
HMGCS1-204ENST00000507293 TMEM87AQ8NBN3 555 aa12.88□□□□□ -0.35
HMGCS1-204ENST00000507293 RNF149Q8NC42 400 aa12.88□□□□□ -0.35
HMGCS1-204ENST00000507293 URGCPQ8TCY9 931 aa12.88□□□□□ -0.35
HMGCS1-204ENST00000507293 GTF3C6Q969F1 213 aa12.88□□□□□ -0.35
HMGCS1-204ENST00000507293 PBXIP1Q96AQ6 731 aa12.88□□□□□ -0.35
HMGCS1-204ENST00000507293 MTRQ99707 1265 aa12.88□□□□□ -0.35
HMGCS1-204ENST00000507293 ADAM7Q9H2U9 754 aa12.88□□□□□ -0.35
HMGCS1-204ENST00000507293 POMKQ9H5K3 350 aa12.88□□□□□ -0.35
HMGCS1-204ENST00000507293 RSAD1Q9HA92 442 aa12.88□□□□□ -0.35
HMGCS1-204ENST00000507293 TSHZ2Q9NRE2 1034 aa12.88□□□□□ -0.35
HMGCS1-204ENST00000507293 ASAP2O43150 1006 aa12.87□□□□□ -0.35
HMGCS1-204ENST00000507293 DDHD2O94830 711 aa12.87□□□□□ -0.35
HMGCS1-204ENST00000507293 ERLIN2O94905 339 aa12.87□□□□□ -0.35
HMGCS1-204ENST00000507293 WEE2P0C1S8 567 aa12.87□□□□□ -0.35
HMGCS1-204ENST00000507293 EPCAMP16422 314 aa12.87□□□□□ -0.35
HMGCS1-204ENST00000507293 HOXA11P31270 313 aaPredicted RBP12.87□□□□□ -0.35
HMGCS1-204ENST00000507293 AFF1P51825 1210 aaKnown RBP12.87□□□□□ -0.35
HMGCS1-204ENST00000507293 ITIH3Q06033 890 aa12.87□□□□□ -0.35
HMGCS1-204ENST00000507293 SIGLEC14Q08ET2 396 aa12.87□□□□□ -0.35
HMGCS1-204ENST00000507293 GIT2Q14161 759 aa12.87□□□□□ -0.35
HMGCS1-204ENST00000507293 CALCRLQ16602 461 aa12.87□□□□□ -0.35
HMGCS1-204ENST00000507293 RARS2Q5T160 578 aaKnown RBP12.87□□□□□ -0.35
HMGCS1-204ENST00000507293 MRPL10Q7Z7H8 261 aaKnown RBP12.87□□□□□ -0.35
HMGCS1-204ENST00000507293 ALYREFQ86V81 257 aaKnown RBP12.87□□□□□ -0.35
HMGCS1-204ENST00000507293 C12orf76Q8N812 135 aaPredicted RBP12.87□□□□□ -0.35
HMGCS1-204ENST00000507293 NSUN7Q8NE18 718 aaKnown RBP12.87□□□□□ -0.35
HMGCS1-204ENST00000507293 NECTIN4Q96NY8 510 aa12.87□□□□□ -0.35
HMGCS1-204ENST00000507293 FAM193BQ96PV7 902 aaPredicted RBP12.87□□□□□ -0.35
HMGCS1-204ENST00000507293 EIF2AK1Q9BQI3 630 aaKnown RBP12.87□□□□□ -0.35
HMGCS1-204ENST00000507293 VN1R3Q9BXE9 311 aa12.87□□□□□ -0.35
HMGCS1-204ENST00000507293 XPNPEP1Q9NQW7 623 aa12.87□□□□□ -0.35
HMGCS1-204ENST00000507293 IRAK3Q9Y616 596 aa12.87□□□□□ -0.35
HMGCS1-204ENST00000507293 MYO10Q9HD67 2058 aa12.87□□□□□ -0.35
HMGCS1-204ENST00000507293 CNTNAP2Q9UHC6 1331 aa12.87□□□□□ -0.35
HMGCS1-204ENST00000507293 BTBD18B2RXH4 712 aa12.86□□□□□ -0.35
HMGCS1-204ENST00000507293 WNT7AO00755 349 aa12.86□□□□□ -0.35
HMGCS1-204ENST00000507293 TSPAN1O60635 241 aa12.86□□□□□ -0.35
HMGCS1-204ENST00000507293 JAK2O60674 1132 aa12.86□□□□□ -0.35
HMGCS1-204ENST00000507293 SLITRK3O94933 977 aa12.86□□□□□ -0.35
HMGCS1-204ENST00000507293 POMCP01189 267 aa12.86□□□□□ -0.35
HMGCS1-204ENST00000507293 NCLP19338 710 aaKnown RBP12.86□□□□□ -0.35
HMGCS1-204ENST00000507293 MTHFRP42898 656 aa12.86□□□□□ -0.35
HMGCS1-204ENST00000507293 PTPN14Q15678 1187 aa12.86□□□□□ -0.35
HMGCS1-204ENST00000507293 KANK3Q6NY19 840 aa12.86□□□□□ -0.35
HMGCS1-204ENST00000507293 ZBTB33Q86T24 672 aa12.86□□□□□ -0.35
HMGCS1-204ENST00000507293 SUGP1Q8IWZ8 645 aaKnown RBP12.86□□□□□ -0.35
HMGCS1-204ENST00000507293 DIS3L2Q8IYB7 885 aaKnown RBP12.86□□□□□ -0.35
HMGCS1-204ENST00000507293 ASAP3Q8TDY4 903 aa12.86□□□□□ -0.35
HMGCS1-204ENST00000507293 SLC22A17Q8WUG5 538 aa12.86□□□□□ -0.35
HMGCS1-204ENST00000507293 RIPOR3Q96MK2 946 aa12.86□□□□□ -0.35
HMGCS1-204ENST00000507293 TMEM175Q9BSA9 504 aa12.86□□□□□ -0.35
HMGCS1-204ENST00000507293 DZANK1Q9NVP4 752 aa12.86□□□□□ -0.35
HMGCS1-204ENST00000507293 PCDHA12Q9UN75 941 aa12.86□□□□□ -0.35
HMGCS1-204ENST00000507293 NR2E1Q9Y466 385 aa12.86□□□□□ -0.35
HMGCS1-204ENST00000507293 C2CD4DB7Z1M9 353 aa12.85□□□□□ -0.35
HMGCS1-204ENST00000507293 INO80B-WBP1J3KQ70 363 aa12.85□□□□□ -0.35
HMGCS1-204ENST00000507293 NEMFO60524 1076 aa12.85□□□□□ -0.35
HMGCS1-204ENST00000507293 LYPLA2O95372 231 aa12.85□□□□□ -0.35
HMGCS1-204ENST00000507293 SSBP05455 408 aaKnown RBP eCLIP12.85□□□□□ -0.35
HMGCS1-204ENST00000507293 ITGA4P13612 1032 aa12.85□□□□□ -0.35
HMGCS1-204ENST00000507293 TXKP42681 527 aa12.85□□□□□ -0.35
HMGCS1-204ENST00000507293 PTENP60484 403 aa12.85□□□□□ -0.35
HMGCS1-204ENST00000507293 CAPSQ13938 189 aa12.85□□□□□ -0.35
HMGCS1-204ENST00000507293 TRIM29Q14134 588 aa12.85□□□□□ -0.35
HMGCS1-204ENST00000507293 TFDP1Q14186 410 aa12.85□□□□□ -0.35
HMGCS1-204ENST00000507293 MXD4Q14582 209 aaPredicted RBP12.85□□□□□ -0.35
HMGCS1-204ENST00000507293 KIAA1841Q6NSI8 718 aa12.85□□□□□ -0.35
HMGCS1-204ENST00000507293 FBXL6Q8N531 539 aa12.85□□□□□ -0.35
HMGCS1-204ENST00000507293 SMG8Q8ND04 991 aaKnown RBP12.85□□□□□ -0.35
HMGCS1-204ENST00000507293 CNNM3Q8NE01 707 aa12.85□□□□□ -0.35
HMGCS1-204ENST00000507293 PRSS33Q8NF86 280 aa12.85□□□□□ -0.35
HMGCS1-204ENST00000507293 ASIC4Q96FT7 647 aa12.85□□□□□ -0.35
HMGCS1-204ENST00000507293 CPB2Q96IY4 423 aa12.85□□□□□ -0.35
HMGCS1-204ENST00000507293 CCDC43Q96MW1 224 aaKnown RBP12.85□□□□□ -0.35
HMGCS1-204ENST00000507293 HSD17B14Q9BPX1 270 aa12.85□□□□□ -0.35
HMGCS1-204ENST00000507293 EIF2AQ9BY44 585 aaKnown RBP12.85□□□□□ -0.35
HMGCS1-204ENST00000507293 TTC12Q9H892 705 aaPredicted RBP12.85□□□□□ -0.35
HMGCS1-204ENST00000507293 PPP4R2Q9NY27 417 aa12.85□□□□□ -0.35
HMGCS1-204ENST00000507293 KANSL3Q9P2N6 904 aa12.85□□□□□ -0.35
HMGCS1-204ENST00000507293 FAN1Q9Y2M0 1017 aa12.85□□□□□ -0.35
HMGCS1-204ENST00000507293 IPPQ9Y573 584 aa12.85□□□□□ -0.35
HMGCS1-204ENST00000507293 NRP1O14786 923 aa12.84□□□□□ -0.35
HMGCS1-204ENST00000507293 DGAT1O75907 488 aa12.84□□□□□ -0.35
HMGCS1-204ENST00000507293 AXLP30530 894 aa12.84□□□□□ -0.35
HMGCS1-204ENST00000507293 RARRES1P49788 294 aa12.84□□□□□ -0.35
HMGCS1-204ENST00000507293 MRE11P49959 708 aa12.84□□□□□ -0.35
HMGCS1-204ENST00000507293 NEK4P51957 841 aa12.84□□□□□ -0.35
HMGCS1-204ENST00000507293 MBTD1Q05BQ5 628 aa12.84□□□□□ -0.35
HMGCS1-204ENST00000507293 ST3GAL1Q11201 340 aa12.84□□□□□ -0.35
HMGCS1-204ENST00000507293 IER5LQ5T953 404 aa12.84□□□□□ -0.35
HMGCS1-204ENST00000507293 NOTUMQ6P988 496 aa12.84□□□□□ -0.35
HMGCS1-204ENST00000507293 PPFIBP1Q86W92 1011 aa12.84□□□□□ -0.35
HMGCS1-204ENST00000507293 IFNLR1Q8IU57 520 aaPredicted RBP12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms