RNA–Protein interactions for RNA: ENST00000496030.1

APTX-233, Transcript of aprataxin, human

TSL 3

Gene APTX, Length 633 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-233	ENST00000496030	SV2B	Q7L1I2	683 aa		13.16	□□□□□ -0.3
APTX-233	ENST00000496030	FSIP1	Q8NA03	581 aa		13.16	□□□□□ -0.3
APTX-233	ENST00000496030	RNF149	Q8NC42	400 aa		13.16	□□□□□ -0.3
APTX-233	ENST00000496030	ENGASE	Q8NFI3	743 aa		13.16	□□□□□ -0.3
APTX-233	ENST00000496030	NLRP7	Q8WX94	980 aa		13.16	□□□□□ -0.3
APTX-233	ENST00000496030	LINC01599	Q8WXQ3	324 aa		13.16	□□□□□ -0.3
APTX-233	ENST00000496030	SEPT8	Q92599	483 aa		13.16	□□□□□ -0.3
APTX-233	ENST00000496030	STAM	Q92783	540 aa		13.16	□□□□□ -0.3
APTX-233	ENST00000496030	NLRP4	Q96MN2	994 aa		13.16	□□□□□ -0.3
APTX-233	ENST00000496030	SLC9A7	Q96T83	725 aa		13.16	□□□□□ -0.3
APTX-233	ENST00000496030	NTPCR	Q9BSD7	190 aa	Known RBP	13.16	□□□□□ -0.3
APTX-233	ENST00000496030	TIPIN	Q9BVW5	301 aa		13.16	□□□□□ -0.3
APTX-233	ENST00000496030	NFKBIZ	Q9BYH8	718 aa		13.16	□□□□□ -0.3
APTX-233	ENST00000496030	IFIH1	Q9BYX4	1025 aa	Known RBP	13.16	□□□□□ -0.3
APTX-233	ENST00000496030	GCOM2	Q9BZD3	368 aa	Predicted RBP	13.16	□□□□□ -0.3
APTX-233	ENST00000496030	CUEDC2	Q9H467	287 aa		13.16	□□□□□ -0.3
APTX-233	ENST00000496030	SERTAD1	Q9UHV2	236 aa		13.16	□□□□□ -0.3
APTX-233	ENST00000496030	ST3GAL5	Q9UNP4	418 aa		13.16	□□□□□ -0.3
APTX-233	ENST00000496030	MYH11	P35749	1972 aa		13.16	□□□□□ -0.3
APTX-233	ENST00000496030	ADGRA3	Q8IWK6	1321 aa		13.15	□□□□□ -0.3
APTX-233	ENST00000496030	MICAL3	Q7RTP6	2002 aa		13.15	□□□□□ -0.3
APTX-233	ENST00000496030	ZDBF2	Q9HCK1	2354 aa		13.15	□□□□□ -0.3
APTX-233	ENST00000496030	LOC101059915	A0A1B0GWI6	518 aa	Predicted RBP	13.15	□□□□□ -0.3
APTX-233	ENST00000496030	MGEA5	O60502	916 aa		13.15	□□□□□ -0.3
APTX-233	ENST00000496030	RPS6KA5	O75582	802 aa		13.15	□□□□□ -0.3
APTX-233	ENST00000496030	SLFN14	P0C7P3	912 aa		13.15	□□□□□ -0.3
APTX-233	ENST00000496030	KCNA5	P22460	613 aa		13.15	□□□□□ -0.3
APTX-233	ENST00000496030	MBTD1	Q05BQ5	628 aa		13.15	□□□□□ -0.3
APTX-233	ENST00000496030	DSC3	Q14574	896 aa		13.15	□□□□□ -0.3
APTX-233	ENST00000496030	AMHR2	Q16671	573 aa		13.15	□□□□□ -0.3
APTX-233	ENST00000496030	LEXM	Q3ZCV2	418 aa		13.15	□□□□□ -0.3
APTX-233	ENST00000496030	TPRN	Q4KMQ1	711 aa		13.15	□□□□□ -0.3
APTX-233	ENST00000496030	CDCA2	Q69YH5	1023 aa	Predicted RBP	13.15	□□□□□ -0.3
APTX-233	ENST00000496030	CNNM4	Q6P4Q7	775 aa		13.15	□□□□□ -0.3
APTX-233	ENST00000496030	SRGAP1	Q7Z6B7	1085 aa		13.15	□□□□□ -0.3
APTX-233	ENST00000496030	TMCO2	Q7Z6W1	182 aa	Predicted RBP	13.15	□□□□□ -0.3
APTX-233	ENST00000496030	MRPS27	Q92552	414 aa	Known RBP	13.15	□□□□□ -0.3
APTX-233	ENST00000496030	FIZ1	Q96SL8	496 aa		13.15	□□□□□ -0.3
APTX-233	ENST00000496030	SPTBN4	Q9H254	2564 aa		13.14	□□□□□ -0.31
APTX-233	ENST00000496030	TTC3	P53804	2025 aa		13.14	□□□□□ -0.31
APTX-233	ENST00000496030	ABHD14A-ACY1	A0A1B0GW23	586 aa		13.14	□□□□□ -0.31
APTX-233	ENST00000496030	ENPP3	O14638	875 aa		13.14	□□□□□ -0.31
APTX-233	ENST00000496030	ALAD	P13716	330 aa		13.14	□□□□□ -0.31
APTX-233	ENST00000496030	PLS3	P13797	630 aa		13.14	□□□□□ -0.31
APTX-233	ENST00000496030	HOXA11	P31270	313 aa	Predicted RBP	13.14	□□□□□ -0.31
APTX-233	ENST00000496030	NAMPT	P43490	491 aa		13.14	□□□□□ -0.31
APTX-233	ENST00000496030	NPTX2	P47972	431 aa		13.14	□□□□□ -0.31
APTX-233	ENST00000496030	PAK2	Q13177	524 aa		13.14	□□□□□ -0.31
APTX-233	ENST00000496030	SNW1	Q13573	536 aa	Known RBP	13.14	□□□□□ -0.31
APTX-233	ENST00000496030	TFDP1	Q14186	410 aa		13.14	□□□□□ -0.31
APTX-233	ENST00000496030	LIN28B	Q6ZN17	250 aa	Known RBP eCLIP	13.14	□□□□□ -0.31
APTX-233	ENST00000496030	FMR1NB	Q8N0W7	255 aa	Predicted RBP	13.14	□□□□□ -0.31
APTX-233	ENST00000496030	CRIPAK	Q8N1N5	446 aa		13.14	□□□□□ -0.31
APTX-233	ENST00000496030	PHOSPHO2	Q8TCD6	241 aa		13.14	□□□□□ -0.31
APTX-233	ENST00000496030	SPIRE2	Q8WWL2	714 aa		13.14	□□□□□ -0.31
APTX-233	ENST00000496030	DDX12P	Q92771	950 aa		13.14	□□□□□ -0.31
APTX-233	ENST00000496030	APBB2	Q92870	758 aa		13.14	□□□□□ -0.31
APTX-233	ENST00000496030	DRC1	Q96MC2	740 aa		13.14	□□□□□ -0.31
APTX-233	ENST00000496030	KIFC3	Q9BVG8	833 aa		13.14	□□□□□ -0.31
APTX-233	ENST00000496030	CCDC113	Q9H0I3	377 aa		13.14	□□□□□ -0.31
APTX-233	ENST00000496030	TNMD	Q9H2S6	317 aa		13.14	□□□□□ -0.31
APTX-233	ENST00000496030	FZD8	Q9H461	694 aa		13.14	□□□□□ -0.31
APTX-233	ENST00000496030	ODF2L	Q9ULJ1	636 aa		13.14	□□□□□ -0.31
APTX-233	ENST00000496030	FRMD3	A2A2Y4	597 aa		13.13	□□□□□ -0.31
APTX-233	ENST00000496030	LRRIQ4	A6NIV6	560 aa		13.13	□□□□□ -0.31
APTX-233	ENST00000496030	TTLL13P	A6NNM8	815 aa		13.13	□□□□□ -0.31
APTX-233	ENST00000496030	GPR182	O15218	404 aa		13.13	□□□□□ -0.31
APTX-233	ENST00000496030	DCX	O43602	365 aa		13.13	□□□□□ -0.31
APTX-233	ENST00000496030	BAIAP3	O94812	1187 aa		13.13	□□□□□ -0.31
APTX-233	ENST00000496030	ZNF202	O95125	648 aa		13.13	□□□□□ -0.31
APTX-233	ENST00000496030	EDN1	P05305	212 aa		13.13	□□□□□ -0.31
APTX-233	ENST00000496030	LIG1	P18858	919 aa		13.13	□□□□□ -0.31
APTX-233	ENST00000496030	CASP1	P29466	404 aa		13.13	□□□□□ -0.31
APTX-233	ENST00000496030	SYK	P43405	635 aa		13.13	□□□□□ -0.31
APTX-233	ENST00000496030	PHKA2	P46019	1235 aa		13.13	□□□□□ -0.31
APTX-233	ENST00000496030	PEX3	P56589	373 aa		13.13	□□□□□ -0.31
APTX-233	ENST00000496030	WDR5	P61964	334 aa	Known RBP	13.13	□□□□□ -0.31
APTX-233	ENST00000496030	NFX1	Q12986	1120 aa	Known RBP	13.13	□□□□□ -0.31
APTX-233	ENST00000496030	IKBKE	Q14164	716 aa		13.13	□□□□□ -0.31
APTX-233	ENST00000496030	PPP2R5A	Q15172	486 aa		13.13	□□□□□ -0.31
APTX-233	ENST00000496030	PTCRA	Q6ISU1	281 aa	Predicted RBP	13.13	□□□□□ -0.31
APTX-233	ENST00000496030	HFE2	Q6ZVN8	426 aa		13.13	□□□□□ -0.31
APTX-233	ENST00000496030	DYM	Q7RTS9	669 aa		13.13	□□□□□ -0.31
APTX-233	ENST00000496030	TAS1R3	Q7RTX0	852 aa		13.13	□□□□□ -0.31
APTX-233	ENST00000496030	GRAMD1C	Q8IYS0	662 aa		13.13	□□□□□ -0.31
APTX-233	ENST00000496030	KCNN1	Q92952	543 aa		13.13	□□□□□ -0.31
APTX-233	ENST00000496030	PAGE5	Q96GU1	130 aa		13.13	□□□□□ -0.31
APTX-233	ENST00000496030	SCLT1	Q96NL6	688 aa		13.13	□□□□□ -0.31
APTX-233	ENST00000496030	C7orf25	Q9BPX7	421 aa		13.13	□□□□□ -0.31
APTX-233	ENST00000496030	TRIM9	Q9C026	710 aa		13.13	□□□□□ -0.31
APTX-233	ENST00000496030	INO80B	Q9C086	356 aa	Predicted RBP	13.13	□□□□□ -0.31
APTX-233	ENST00000496030	KCNH6	Q9H252	994 aa		13.13	□□□□□ -0.31
APTX-233	ENST00000496030	C17orf75	Q9HAS0	396 aa		13.13	□□□□□ -0.31
APTX-233	ENST00000496030	MAGEF1	Q9HAY2	307 aa		13.13	□□□□□ -0.31
APTX-233	ENST00000496030	ARHGAP28	Q9P2N2	729 aa		13.13	□□□□□ -0.31
APTX-233	ENST00000496030	USP25	Q9UHP3	1055 aa		13.13	□□□□□ -0.31
APTX-233	ENST00000496030	MTUS1	Q9ULD2	1270 aa		13.13	□□□□□ -0.31
APTX-233	ENST00000496030	GRXCR2	A6NFK2	248 aa		13.12	□□□□□ -0.31
APTX-233	ENST00000496030	B4GALT5	O43286	388 aa		13.12	□□□□□ -0.31
APTX-233	ENST00000496030	TSPAN1	O60635	241 aa		13.12	□□□□□ -0.31

Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms