RNA–Protein interactions for RNA: ENST00000496024.1

CALD1-223, Transcript of caldesmon 1, human

TSL 4

Gene CALD1, Length 557 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CALD1-223	ENST00000496024	AXDND1	Q5T1B0	1012 aa	Predicted RBP	10.84	□□□□□ -0.67
CALD1-223	ENST00000496024	SPOUT1	Q5T280	376 aa	Known RBP	10.84	□□□□□ -0.67
CALD1-223	ENST00000496024	CDCA2	Q69YH5	1023 aa	Predicted RBP	10.84	□□□□□ -0.67
CALD1-223	ENST00000496024	NOTUM	Q6P988	496 aa		10.84	□□□□□ -0.67
CALD1-223	ENST00000496024	SV2B	Q7L1I2	683 aa		10.84	□□□□□ -0.67
CALD1-223	ENST00000496024	ABI1	Q8IZP0	508 aa		10.84	□□□□□ -0.67
CALD1-223	ENST00000496024	CRIPAK	Q8N1N5	446 aa		10.84	□□□□□ -0.67
CALD1-223	ENST00000496024	SP7	Q8TDD2	431 aa	Predicted RBP	10.84	□□□□□ -0.67
CALD1-223	ENST00000496024	GDPD5	Q8WTR4	605 aa		10.84	□□□□□ -0.67
CALD1-223	ENST00000496024	STAM	Q92783	540 aa		10.84	□□□□□ -0.67
CALD1-223	ENST00000496024	DHX58	Q96C10	678 aa		10.84	□□□□□ -0.67
CALD1-223	ENST00000496024	ZNF689	Q96CS4	500 aa	Predicted RBP	10.84	□□□□□ -0.67
CALD1-223	ENST00000496024	REEP2	Q9BRK0	252 aa		10.84	□□□□□ -0.67
CALD1-223	ENST00000496024	TIPIN	Q9BVW5	301 aa		10.84	□□□□□ -0.67
CALD1-223	ENST00000496024	APOL6	Q9BWW8	343 aa		10.84	□□□□□ -0.67
CALD1-223	ENST00000496024	EIF2A	Q9BY44	585 aa	Known RBP	10.84	□□□□□ -0.67
CALD1-223	ENST00000496024	NFKBIZ	Q9BYH8	718 aa		10.84	□□□□□ -0.67
CALD1-223	ENST00000496024	KMT5A	Q9NQR1	393 aa		10.84	□□□□□ -0.67
CALD1-223	ENST00000496024	FAM105A	Q9NUU6	356 aa		10.84	□□□□□ -0.67
CALD1-223	ENST00000496024	RNF216	Q9NWF9	866 aa	Predicted RBP	10.84	□□□□□ -0.67
CALD1-223	ENST00000496024	HCST	Q9UBK5	93 aa		10.84	□□□□□ -0.67
CALD1-223	ENST00000496024	STK17A	Q9UEE5	414 aa		10.84	□□□□□ -0.67
CALD1-223	ENST00000496024	INPP5F	Q9Y2H2	1132 aa		10.84	□□□□□ -0.67
CALD1-223	ENST00000496024	PCDHB2	Q9Y5E7	798 aa		10.84	□□□□□ -0.67
CALD1-223	ENST00000496024	MRPL42	Q9Y6G3	142 aa	Known RBP	10.84	□□□□□ -0.67
CALD1-223	ENST00000496024	CDH23	Q9H251	3354 aa		10.84	□□□□□ -0.67
CALD1-223	ENST00000496024	PRRC2B	Q5JSZ5	2229 aa	Known RBP	10.84	□□□□□ -0.67
CALD1-223	ENST00000496024	TRANK1	O15050	2925 aa		10.83	□□□□□ -0.68
CALD1-223	ENST00000496024	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	10.83	□□□□□ -0.68
CALD1-223	ENST00000496024	MYMK	A6NI61	221 aa		10.83	□□□□□ -0.68
CALD1-223	ENST00000496024	MEIS3P2	A8K0S8	358 aa		10.83	□□□□□ -0.68
CALD1-223	ENST00000496024		K7ERI5	159 aa		10.83	□□□□□ -0.68
CALD1-223	ENST00000496024	TBCA	O75347	108 aa	Known RBP	10.83	□□□□□ -0.68
CALD1-223	ENST00000496024	CSPG5	O95196	566 aa		10.83	□□□□□ -0.68
CALD1-223	ENST00000496024	NPTXR	O95502	500 aa		10.83	□□□□□ -0.68
CALD1-223	ENST00000496024	EDN1	P05305	212 aa		10.83	□□□□□ -0.68
CALD1-223	ENST00000496024	SKI	P12755	728 aa		10.83	□□□□□ -0.68
CALD1-223	ENST00000496024	PLS3	P13797	630 aa		10.83	□□□□□ -0.68
CALD1-223	ENST00000496024	AXL	P30530	894 aa		10.83	□□□□□ -0.68
CALD1-223	ENST00000496024	CTNNB1	P35222	781 aa		10.83	□□□□□ -0.68
CALD1-223	ENST00000496024	ERVK-21	P61565	698 aa		10.83	□□□□□ -0.68
CALD1-223	ENST00000496024	PRPF4B	Q13523	1007 aa	Known RBP	10.83	□□□□□ -0.68
CALD1-223	ENST00000496024	GIT2	Q14161	759 aa		10.83	□□□□□ -0.68
CALD1-223	ENST00000496024	NAALADL2	Q58DX5	795 aa		10.83	□□□□□ -0.68
CALD1-223	ENST00000496024	CLLU1OS	Q5K130	101 aa		10.83	□□□□□ -0.68
CALD1-223	ENST00000496024	FAM43B	Q6ZT52	329 aa	Predicted RBP	10.83	□□□□□ -0.68
CALD1-223	ENST00000496024	ZNF598	Q86UK7	904 aa	Known RBP	10.83	□□□□□ -0.68
CALD1-223	ENST00000496024	TMEM192	Q8IY95	271 aa		10.83	□□□□□ -0.68
CALD1-223	ENST00000496024	CMTR2	Q8IYT2	770 aa	Known RBP	10.83	□□□□□ -0.68
CALD1-223	ENST00000496024	MYCT1	Q8N699	235 aa		10.83	□□□□□ -0.68
CALD1-223	ENST00000496024	FBXO22	Q8NEZ5	403 aa		10.83	□□□□□ -0.68
CALD1-223	ENST00000496024	GAS2L1	Q99501	681 aa	Predicted RBP	10.83	□□□□□ -0.68
CALD1-223	ENST00000496024	TRIM6	Q9C030	488 aa	Predicted RBP	10.83	□□□□□ -0.68
CALD1-223	ENST00000496024	CCDC113	Q9H0I3	377 aa		10.83	□□□□□ -0.68
CALD1-223	ENST00000496024	FZD8	Q9H461	694 aa		10.83	□□□□□ -0.68
CALD1-223	ENST00000496024	ELAC1	Q9H777	363 aa	Known RBP	10.83	□□□□□ -0.68
CALD1-223	ENST00000496024	RC3H2	Q9HBD1	1191 aa	Known RBP	10.83	□□□□□ -0.68
CALD1-223	ENST00000496024	RNF19A	Q9NV58	838 aa		10.83	□□□□□ -0.68
CALD1-223	ENST00000496024	FAM13B	Q9NYF5	915 aa		10.83	□□□□□ -0.68
CALD1-223	ENST00000496024	KCND2	Q9NZV8	630 aa		10.83	□□□□□ -0.68
CALD1-223	ENST00000496024	HES2	Q9Y543	173 aa		10.83	□□□□□ -0.68
CALD1-223	ENST00000496024	COL4A6	Q14031	1691 aa		10.82	□□□□□ -0.68
CALD1-223	ENST00000496024	KIAA1671	Q9BY89	1806 aa		10.82	□□□□□ -0.68
CALD1-223	ENST00000496024	ACKR2	O00590	384 aa		10.82	□□□□□ -0.68
CALD1-223	ENST00000496024	POLR2D	O15514	142 aa	Known RBP	10.82	□□□□□ -0.68
CALD1-223	ENST00000496024	EOMES	O95936	686 aa		10.82	□□□□□ -0.68
CALD1-223	ENST00000496024	ITGA4	P13612	1032 aa		10.82	□□□□□ -0.68
CALD1-223	ENST00000496024	RAB27A	P51159	221 aa		10.82	□□□□□ -0.68
CALD1-223	ENST00000496024	EFNA5	P52803	228 aa		10.82	□□□□□ -0.68
CALD1-223	ENST00000496024	SMTN	P53814	917 aa		10.82	□□□□□ -0.68
CALD1-223	ENST00000496024	ADGRE1	Q14246	886 aa		10.82	□□□□□ -0.68
CALD1-223	ENST00000496024	PCBP1	Q15365	356 aa	Known RBP eCLIP	10.82	□□□□□ -0.68
CALD1-223	ENST00000496024	EPC2	Q52LR7	807 aa		10.82	□□□□□ -0.68
CALD1-223	ENST00000496024	NT5DC1	Q5TFE4	455 aa		10.82	□□□□□ -0.68
CALD1-223	ENST00000496024	RESP18	Q5W5W9	173 aa		10.82	□□□□□ -0.68
CALD1-223	ENST00000496024	EEF1DP3	Q658K8	133 aa		10.82	□□□□□ -0.68
CALD1-223	ENST00000496024	MICALL1	Q8N3F8	863 aa		10.82	□□□□□ -0.68
CALD1-223	ENST00000496024	SMG8	Q8ND04	991 aa	Known RBP	10.82	□□□□□ -0.68
CALD1-223	ENST00000496024	PPM1E	Q8WY54	764 aa		10.82	□□□□□ -0.68
CALD1-223	ENST00000496024	DDX12P	Q92771	950 aa		10.82	□□□□□ -0.68
CALD1-223	ENST00000496024	PGBD4	Q96DM1	585 aa		10.82	□□□□□ -0.68
CALD1-223	ENST00000496024	PRIMPOL	Q96LW4	560 aa		10.82	□□□□□ -0.68
CALD1-223	ENST00000496024	CASD1	Q96PB1	797 aa		10.82	□□□□□ -0.68
CALD1-223	ENST00000496024	TMEM117	Q9H0C3	514 aa		10.82	□□□□□ -0.68
CALD1-223	ENST00000496024	C17orf75	Q9HAS0	396 aa		10.82	□□□□□ -0.68
CALD1-223	ENST00000496024	PARVG	Q9HBI0	331 aa		10.82	□□□□□ -0.68
CALD1-223	ENST00000496024	TYW1	Q9NV66	732 aa	Known RBP	10.82	□□□□□ -0.68
CALD1-223	ENST00000496024	LARS	Q9P2J5	1176 aa	Known RBP	10.82	□□□□□ -0.68
CALD1-223	ENST00000496024	ODF2L	Q9ULJ1	636 aa		10.82	□□□□□ -0.68
CALD1-223	ENST00000496024	IPP	Q9Y573	584 aa		10.82	□□□□□ -0.68
CALD1-223	ENST00000496024	CNTNAP2	Q9UHC6	1331 aa		10.82	□□□□□ -0.68
CALD1-223	ENST00000496024		A0A1B0GUA9	196 aa		10.81	□□□□□ -0.68
CALD1-223	ENST00000496024		A0A1B0GVL5	298 aa		10.81	□□□□□ -0.68
CALD1-223	ENST00000496024		K7ENM7	598 aa		10.81	□□□□□ -0.68
CALD1-223	ENST00000496024	N4BP3	O15049	544 aa		10.81	□□□□□ -0.68
CALD1-223	ENST00000496024	HOXA2	O43364	376 aa		10.81	□□□□□ -0.68
CALD1-223	ENST00000496024	HARS	P12081	509 aa	Known RBP	10.81	□□□□□ -0.68
CALD1-223	ENST00000496024	IDE	P14735	1019 aa		10.81	□□□□□ -0.68
CALD1-223	ENST00000496024	BMPR1A	P36894	532 aa		10.81	□□□□□ -0.68
CALD1-223	ENST00000496024	RNASEL	Q05823	741 aa	Known RBP	10.81	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms